Symbol:
Gast
Name:
gastrin
RGD ID:
18905495
Description:
ENCODES a protein that exhibits hormone activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN cimetidine pharmacodynamics pathway; esomeprazole pharmacodynamics pathway; famotidine pharmacodynamics pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Barrett's esophagus (ortholog); Colonic Neoplasms (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
GAST (gastrin) NCBI
Ortholog
Mus musculus (house mouse):
Gast (gastrin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):
Gast (gastrin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Gast (gastrin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
GAST (gastrin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
GAST (gastrin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Gast (gastrin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
GAST (gastrin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
GAST (gastrin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Latest Assembly:
HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Annotations - SMPDB
Gast
GAST Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 17 41,712,331 - 41,715,969 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 17 41,712,331 - 41,715,969 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 17 39,868,583 - 39,872,221 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 17 37,122,139 - 37,125,747 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 17 37,122,105 - 37,125,749 NCBI Celera 17 36,519,728 - 36,523,335 (+) NCBI Celera Cytogenetic Map 17 q21.2 NCBI HuRef 17 35,630,734 - 35,634,345 (+) NCBI HuRef CHM1_1 17 40,104,051 - 40,107,693 (+) NCBI CHM1_1 T2T-CHM13v2.0 17 42,568,780 - 42,572,417 (+) NCBI T2T-CHM13v2.0
Gast Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 11 100,225,233 - 100,227,823 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 11 100,225,233 - 100,227,822 (+) Ensembl GRCm39 Ensembl GRCm38 11 100,334,407 - 100,336,997 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 11 100,334,407 - 100,336,996 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 11 100,195,726 - 100,198,310 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 11 100,150,497 - 100,153,086 (+) NCBI MGSCv36 mm8 Celera 11 110,951,803 - 110,954,387 (+) NCBI Celera Cytogenetic Map 11 D NCBI cM Map 11 63.46 NCBI
Gast Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 10 85,765,216 - 85,767,881 (+) NCBI GRCr8 mRatBN7.2 10 85,264,832 - 85,269,393 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 10 85,264,832 - 85,267,496 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 10 90,304,617 - 90,307,386 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 10 89,782,921 - 89,785,593 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 10 85,173,120 - 85,175,782 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 10 88,245,532 - 88,248,485 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 10 88,245,532 - 88,248,484 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 10 88,038,779 - 88,041,731 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 10 89,273,628 - 89,276,192 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 10 89,287,997 - 89,290,562 (+) NCBI Celera 10 83,982,177 - 83,985,941 (+) NCBI Celera Cytogenetic Map 10 q31 NCBI
Gast Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955451 15,987,597 - 15,988,131 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955451 15,987,160 - 15,988,067 (+) NCBI ChiLan1.0 ChiLan1.0
GAST Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 19 23,265,782 - 23,270,765 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 17 25,155,901 - 25,160,884 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 17 15,597,741 - 15,602,724 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 17 15,816,656 - 15,820,296 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 17 15,816,656 - 15,820,296 (-) Ensembl panpan1.1 panPan2
GAST Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 9 21,081,638 - 21,084,122 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 9 21,081,639 - 21,083,932 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 9 20,543,614 - 20,545,919 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 9 21,802,583 - 21,804,888 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 9 21,802,584 - 21,804,877 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 9 20,588,491 - 20,590,796 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 9 20,854,461 - 20,856,766 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 9 20,958,434 - 20,960,739 (-) NCBI UU_Cfam_GSD_1.0
Gast Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405602 20,438,522 - 20,441,534 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936490 16,636,146 - 16,636,548 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936490 16,636,146 - 16,636,548 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
GAST Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 12 20,953,202 - 20,955,434 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 12 20,953,202 - 20,955,434 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 12 21,119,838 - 21,123,391 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
GAST Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 16 64,526,548 - 64,532,145 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 16 64,526,636 - 64,527,080 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666077 35,361,331 - 35,361,996 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSHGLT00000018700 ⟹ ENSHGLP00000018516
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624795 1,976,380 - 1,976,819 (-) Ensembl
RefSeq Acc Id:
XM_004859840 ⟹ XP_004859897
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624795 1,976,170 - 1,976,819 (-) NCBI
RefSeq Acc Id:
XP_004859897 ⟸ XM_004859840
- UniProtKB:
G5B0M1 (UniProtKB/TrEMBL), A0AAX6PTZ8 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSHGLP00000018516 ⟸ ENSHGLT00000018700
