Gpr180 (G protein-coupled receptor 180) - Rat Genome Database

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Gene: Gpr180 (G protein-coupled receptor 180) Heterocephalus glaber
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Symbol: Gpr180
Name: G protein-coupled receptor 180
RGD ID: 18904267
Description: INVOLVED IN G protein-coupled receptor signaling pathway (inferred); response to pheromone (inferred); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Congenital Microcoria (ortholog); holoprosencephaly 5 (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: integral membrane protein GPR180
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248791,387,867 - 1,410,767 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248791,388,033 - 1,412,727 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Gpr180
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248791,387,867 - 1,410,767 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248791,388,033 - 1,412,727 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GPR180
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381394,601,857 - 94,634,661 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1394,601,857 - 94,634,661 (+)EnsemblGRCh38hg38GRCh38
GRCh371395,254,111 - 95,286,915 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361394,052,105 - 94,079,947 (+)NCBINCBI36Build 36hg18NCBI36
Celera1376,102,074 - 76,129,910 (+)NCBICelera
Cytogenetic Map13q32.1NCBI
HuRef1375,851,373 - 75,884,161 (+)NCBIHuRef
CHM1_11395,223,550 - 95,256,344 (+)NCBICHM1_1
T2T-CHM13v2.01393,805,369 - 93,838,171 (+)NCBIT2T-CHM13v2.0
Gpr180
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914118,374,513 - 118,401,644 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14118,374,570 - 118,400,673 (+)EnsemblGRCm39 Ensembl
GRCm3814118,137,105 - 118,164,232 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,137,158 - 118,163,261 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714118,536,349 - 118,563,454 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614117,019,505 - 117,047,938 (+)NCBIMGSCv36mm8
Celera14116,691,545 - 116,719,686 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1461.78NCBI
Gpr180
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815101,602,870 - 101,635,556 (+)NCBIGRCr8
mRatBN7.21595,195,782 - 95,224,955 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1595,199,777 - 95,228,373 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1599,104,681 - 99,128,263 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.015100,236,642 - 100,260,224 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01597,165,331 - 97,188,913 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.015103,340,387 - 103,369,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15103,344,476 - 103,369,630 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015106,779,454 - 106,808,159 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415102,931,713 - 102,955,239 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.115102,947,492 - 102,971,018 (+)NCBI
Celera1594,051,859 - 94,075,480 (+)NCBICelera
Cytogenetic Map15q24NCBI
Gpr180
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540415,250,532 - 15,275,392 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540415,250,532 - 15,275,381 (-)NCBIChiLan1.0ChiLan1.0
GPR180
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21496,130,516 - 96,193,324 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11394,799,189 - 94,832,461 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01375,774,879 - 75,808,210 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11394,930,657 - 94,964,493 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1394,930,349 - 94,957,032 (+)Ensemblpanpan1.1panPan2
GPR180
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12245,402,127 - 45,434,693 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2245,401,443 - 45,431,483 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2245,188,938 - 45,221,073 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02245,833,299 - 45,865,441 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2245,831,339 - 45,865,430 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12245,486,445 - 45,518,575 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02245,527,326 - 45,559,461 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02245,536,897 - 45,569,057 (+)NCBIUU_Cfam_GSD_1.0
Gpr180
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945180,962,446 - 180,990,884 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647214,959,862 - 14,989,709 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647214,963,022 - 14,989,709 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPR180
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1163,720,095 - 63,751,684 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11163,720,048 - 63,764,720 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21169,826,935 - 69,859,762 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPR180
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1373,429,949 - 73,460,134 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl373,430,165 - 73,458,011 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604629,819,561 - 29,854,657 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002929   ⟹   ENSHGLP00000002875
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248791,387,867 - 1,410,767 (+)Ensembl
RefSeq Acc Id: XM_004870817   ⟹   XP_004870874
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248791,388,033 - 1,412,727 (+)NCBI
RefSeq Acc Id: XM_021249031   ⟹   XP_021104690
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248791,388,353 - 1,412,727 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004870874 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104690 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002875
RefSeq Acc Id: XP_004870874   ⟸   XM_004870817
- Peptide Label: isoform X1
- UniProtKB: G5B167 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104690   ⟸   XM_021249031
- Peptide Label: isoform X2
- UniProtKB: G5B167 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000002875   ⟸   ENSHGLT00000002929


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002152 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002929 ENTREZGENE
InterPro GPR180-like_N UniProtKB/TrEMBL
  GPR180/TMEM145 UniProtKB/TrEMBL
  Intimal_thickness-rel_rcpt UniProtKB/TrEMBL
NCBI Gene Gpr180 ENTREZGENE
PANTHER INTEGRAL MEMBRANE PROTEIN GPR180 UniProtKB/TrEMBL
  INTIMAL THICKNESS RECEPTOR-RELATED UniProtKB/TrEMBL
Pfam GP180_GOLD UniProtKB/TrEMBL
  GpcrRhopsn4 UniProtKB/TrEMBL
UniProt A0AAX6Q9H9_HETGA UniProtKB/TrEMBL
  A0AAX6S8D8_HETGA UniProtKB/TrEMBL
  G5B167 ENTREZGENE, UniProtKB/TrEMBL