Gpr180 (G protein-coupled receptor 180) - Rat Genome Database

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Gene: Gpr180 (G protein-coupled receptor 180) Chinchilla lanigera
Analyze
Symbol: Gpr180
Name: G protein-coupled receptor 180
RGD ID: 9060433
Description: ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Congenital Microcoria (ortholog); holoprosencephaly 5 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: integral membrane protein GPR180
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540415,250,532 - 15,275,392 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540415,250,532 - 15,275,381 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Gpr180
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540415,250,532 - 15,275,392 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540415,250,532 - 15,275,381 (-)NCBIChiLan1.0ChiLan1.0
GPR180
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381394,601,857 - 94,634,661 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1394,601,857 - 94,634,661 (+)EnsemblGRCh38hg38GRCh38
GRCh371395,254,111 - 95,286,915 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361394,052,105 - 94,079,947 (+)NCBINCBI36hg18NCBI36
Celera1376,102,074 - 76,129,910 (+)NCBI
Cytogenetic Map13q32.1NCBI
HuRef1375,851,373 - 75,884,161 (+)NCBIHuRef
CHM1_11395,223,550 - 95,256,344 (+)NCBICHM1_1
T2T-CHM13v2.01393,805,369 - 93,838,171 (+)NCBI
Gpr180
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914118,374,513 - 118,401,644 (+)NCBIGRCm39mm39
GRCm39 Ensembl14118,374,570 - 118,400,673 (+)Ensembl
GRCm3814118,137,105 - 118,164,232 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,137,158 - 118,163,261 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714118,536,349 - 118,563,454 (+)NCBIGRCm37mm9NCBIm37
MGSCv3614117,019,505 - 117,047,938 (+)NCBImm8
Celera14116,691,545 - 116,719,686 (+)NCBICelera
Cytogenetic Map14E4NCBI
Gpr180
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21595,195,782 - 95,224,955 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1595,199,777 - 95,228,373 (+)Ensembl
Rnor_6.015103,340,387 - 103,369,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15103,344,476 - 103,369,630 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015106,779,454 - 106,808,159 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415102,931,713 - 102,955,239 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115102,947,492 - 102,971,018 (+)NCBI
Celera1594,051,859 - 94,075,480 (+)NCBICelera
Cytogenetic Map15q24NCBI
GPR180
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11394,930,657 - 94,964,493 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1394,930,349 - 94,957,032 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01375,774,879 - 75,808,210 (+)NCBIMhudiblu_PPA_v0panPan3
GPR180
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12245,402,127 - 45,434,693 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2245,401,443 - 45,431,483 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2245,188,938 - 45,221,073 (+)NCBI
ROS_Cfam_1.02245,833,299 - 45,865,441 (+)NCBI
ROS_Cfam_1.0 Ensembl2245,831,339 - 45,865,430 (+)Ensembl
UMICH_Zoey_3.12245,486,445 - 45,518,575 (+)NCBI
UNSW_CanFamBas_1.02245,527,326 - 45,559,461 (+)NCBI
UU_Cfam_GSD_1.02245,536,897 - 45,569,057 (+)NCBI
Gpr180
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945180,962,446 - 180,990,884 (+)NCBI
SpeTri2.0NW_00493647214,963,022 - 14,989,709 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPR180
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1163,720,095 - 63,751,684 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11163,720,048 - 63,764,720 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21169,826,935 - 69,859,762 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPR180
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1373,429,949 - 73,460,134 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl373,430,165 - 73,458,011 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604629,819,561 - 29,854,657 (+)NCBIVero_WHO_p1.0
Gpr180
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248791,387,867 - 1,410,767 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248791,388,033 - 1,412,727 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004254   ⟹   ENSCLAP00000004172
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540415,250,532 - 15,275,392 (-)Ensembl
RefSeq Acc Id: XM_005374110   ⟹   XP_005374167
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540415,250,532 - 15,275,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516272   ⟹   XP_013371726
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540415,250,532 - 15,275,381 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374167 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371726 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374167   ⟸   XM_005374110
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013371726   ⟸   XM_013516272
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000004172   ⟸   ENSCLAT00000004254
Protein Domains
GpcrRhopsn4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002976 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000004172 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004254 ENTREZGENE, UniProtKB/TrEMBL
InterPro Intimal_thickness-rel_rcpt UniProtKB/TrEMBL
NCBI Gene Gpr180 ENTREZGENE
Pfam GpcrRhopsn4 UniProtKB/TrEMBL
UniProt A0A8C2UQ18_CHILA UniProtKB/TrEMBL