Il17ra (interleukin 17 receptor A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Il17ra (interleukin 17 receptor A) Heterocephalus glaber
Analyze
Symbol: Il17ra
Name: interleukin 17 receptor A
RGD ID: 18903284
Description: ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN cellular response to cytokine stimulus (ortholog); defense response to fungus (ortholog); fibroblast activation (ortholog); ASSOCIATED WITH brain ischemia (ortholog); chronic mucocutaneous candidiasis (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin-17 receptor A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473510,138,418 - 10,164,198 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473510,139,787 - 10,164,074 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Il17ra
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473510,138,418 - 10,164,198 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473510,139,787 - 10,164,074 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IL17RA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382217,085,000 - 17,115,693 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2217,084,954 - 17,115,693 (+)EnsemblGRCh38hg38GRCh38
GRCh372217,565,890 - 17,596,583 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362215,945,849 - 15,971,405 (+)NCBINCBI36Build 36hg18NCBI36
Build 342215,940,411 - 15,965,941NCBI
Celera221,188,127 - 1,213,694 (+)NCBICelera
Cytogenetic Map22q11.1NCBI
HuRef221,385,786 - 1,416,555 (+)NCBIHuRef
CHM1_12217,570,853 - 17,601,396 (+)NCBICHM1_1
T2T-CHM13v2.02217,761,784 - 17,792,571 (+)NCBIT2T-CHM13v2.0
Il17ra
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396120,440,143 - 120,460,692 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6120,440,208 - 120,464,520 (+)EnsemblGRCm39 Ensembl
GRCm386120,463,181 - 120,483,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6120,463,247 - 120,487,559 (+)EnsemblGRCm38mm10GRCm38
MGSCv376120,413,215 - 120,433,745 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366120,428,854 - 120,448,651 (+)NCBIMGSCv36mm8
Celera6122,300,019 - 122,320,559 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map656.95NCBI
Il17ra
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84155,339,742 - 155,362,382 (+)NCBIGRCr8
mRatBN7.24153,667,534 - 153,690,174 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4153,667,534 - 153,690,174 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4159,942,994 - 159,965,630 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04155,726,725 - 155,749,362 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04154,350,081 - 154,372,717 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04152,995,865 - 153,018,394 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4152,995,865 - 153,018,394 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04220,083,472 - 220,106,001 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44156,838,353 - 156,862,345 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14157,083,050 - 157,107,186 (+)NCBI
Celera4142,518,868 - 142,541,353 (+)NCBICelera
Cytogenetic Map4q42NCBI
Il17ra
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554545,230,522 - 5,254,394 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554545,230,384 - 5,252,769 (+)NCBIChiLan1.0ChiLan1.0
IL17RA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22327,397,454 - 27,430,661 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12229,947,499 - 29,981,308 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v022511,091 - 541,504 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12215,950,069 - 15,974,865 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2215,950,463 - 15,974,865 (+)Ensemblpanpan1.1panPan2
IL17RA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12744,798,960 - 44,812,287 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2744,791,066 - 44,811,064 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha271,866,105 - 1,888,771 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02745,159,783 - 45,182,452 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12745,089,350 - 45,111,971 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02745,061,199 - 45,083,837 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0271,223,566 - 1,246,226 (-)NCBIUU_Cfam_GSD_1.0
Il17ra
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945110,779,728 - 110,802,955 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936807143,165 - 165,820 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL17RA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl569,461,290 - 69,480,112 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1569,461,280 - 69,480,343 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000022886   ⟹   ENSHGLP00000022672
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473510,138,418 - 10,164,198 (-)Ensembl
RefSeq Acc Id: XM_004837609   ⟹   XP_004837666
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473510,139,787 - 10,164,074 (-)NCBI
RefSeq Acc Id: XM_004837610   ⟹   XP_004837667
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473510,139,787 - 10,164,074 (-)NCBI
RefSeq Acc Id: XM_021249646   ⟹   XP_021105305
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473510,139,787 - 10,164,074 (-)NCBI
RefSeq Acc Id: XM_021249651   ⟹   XP_021105310
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473510,139,787 - 10,164,074 (-)NCBI
RefSeq Acc Id: XM_021249655   ⟹   XP_021105314
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473510,139,787 - 10,154,677 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004837666 (Get FASTA)   NCBI Sequence Viewer  
  XP_004837667 (Get FASTA)   NCBI Sequence Viewer  
  XP_021105305 (Get FASTA)   NCBI Sequence Viewer  
  XP_021105310 (Get FASTA)   NCBI Sequence Viewer  
  XP_021105314 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022672
RefSeq Acc Id: XP_021105310   ⟸   XM_021249651
- Peptide Label: isoform X4
- UniProtKB: G5AQP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105305   ⟸   XM_021249646
- Peptide Label: isoform X3
- UniProtKB: G5AQP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004837667   ⟸   XM_004837610
- Peptide Label: isoform X2
- UniProtKB: G5AQP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004837666   ⟸   XM_004837609
- Peptide Label: isoform X1
- UniProtKB: G5AQP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105314   ⟸   XM_021249655
- Peptide Label: isoform X5
- UniProtKB: G5AQP3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000022672   ⟸   ENSHGLT00000022886


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016169 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000022886 ENTREZGENE
Gene3D-CATH 3.40.50.11530 UniProtKB/TrEMBL
  Interleukin-17 receptor A/B, fibronectin-III-like domain 1 UniProtKB/TrEMBL
  Interleukin-17 receptor A/B, fibronectin-III-like domain 2 UniProtKB/TrEMBL
InterPro IL-17_rcpt-like UniProtKB/TrEMBL
  IL17R_fnIII_D1 UniProtKB/TrEMBL
  IL17RA/B_FnIII-like_1_sf UniProtKB/TrEMBL
  IL17RA/B_FnIII-like_2_sf UniProtKB/TrEMBL
  SEFIR_dom UniProtKB/TrEMBL
NCBI Gene Il17ra ENTREZGENE
PANTHER INTERLEUKIN-17 RECEPTOR UniProtKB/TrEMBL
  INTERLEUKIN-17 RECEPTOR A UniProtKB/TrEMBL
Pfam IL17R_fnIII_D1 UniProtKB/TrEMBL
  IL17R_fnIII_D2 UniProtKB/TrEMBL
  SEFIR UniProtKB/TrEMBL
PROSITE SEFIR UniProtKB/TrEMBL
UniProt G5AQP3 ENTREZGENE, UniProtKB/TrEMBL