IL17RA (interleukin 17 receptor A) - Rat Genome Database

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Gene: IL17RA (interleukin 17 receptor A) Canis lupus familiaris
Analyze
Symbol: IL17RA
Name: interleukin 17 receptor A
RGD ID: 12217404
Description: ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN cellular response to cytokine stimulus (ortholog); defense response to fungus (ortholog); fibroblast activation (ortholog); ASSOCIATED WITH brain ischemia (ortholog); chronic mucocutaneous candidiasis (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin-17 receptor A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12744,798,960 - 44,812,287 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2744,791,066 - 44,811,064 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha271,866,105 - 1,888,771 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02745,159,783 - 45,182,452 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12745,089,350 - 45,111,971 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02745,061,199 - 45,083,837 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0271,223,566 - 1,246,226 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
IL17RA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12744,798,960 - 44,812,287 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2744,791,066 - 44,811,064 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha271,866,105 - 1,888,771 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02745,159,783 - 45,182,452 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12745,089,350 - 45,111,971 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02745,061,199 - 45,083,837 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0271,223,566 - 1,246,226 (-)NCBIUU_Cfam_GSD_1.0
IL17RA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382217,085,000 - 17,115,693 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2217,084,954 - 17,115,693 (+)EnsemblGRCh38hg38GRCh38
GRCh372217,565,890 - 17,596,583 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362215,945,849 - 15,971,405 (+)NCBINCBI36Build 36hg18NCBI36
Build 342215,940,411 - 15,965,941NCBI
Celera221,188,127 - 1,213,694 (+)NCBICelera
Cytogenetic Map22q11.1NCBI
HuRef221,385,786 - 1,416,555 (+)NCBIHuRef
CHM1_12217,570,853 - 17,601,396 (+)NCBICHM1_1
T2T-CHM13v2.02217,761,784 - 17,792,571 (+)NCBIT2T-CHM13v2.0
Il17ra
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396120,440,143 - 120,460,692 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6120,440,208 - 120,464,520 (+)EnsemblGRCm39 Ensembl
GRCm386120,463,181 - 120,483,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6120,463,247 - 120,487,559 (+)EnsemblGRCm38mm10GRCm38
MGSCv376120,413,215 - 120,433,745 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366120,428,854 - 120,448,651 (+)NCBIMGSCv36mm8
Celera6122,300,019 - 122,320,559 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map656.95NCBI
Il17ra
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84155,339,742 - 155,362,382 (+)NCBIGRCr8
mRatBN7.24153,667,534 - 153,690,174 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4153,667,534 - 153,690,174 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4159,942,994 - 159,965,630 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04155,726,725 - 155,749,362 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04154,350,081 - 154,372,717 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04152,995,865 - 153,018,394 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4152,995,865 - 153,018,394 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04220,083,472 - 220,106,001 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44156,838,353 - 156,862,345 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14157,083,050 - 157,107,186 (+)NCBI
Celera4142,518,868 - 142,541,353 (+)NCBICelera
Cytogenetic Map4q42NCBI
Il17ra
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554545,230,522 - 5,254,394 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554545,230,384 - 5,252,769 (+)NCBIChiLan1.0ChiLan1.0
IL17RA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22327,397,454 - 27,430,661 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12229,947,499 - 29,981,308 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v022511,091 - 541,504 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12215,950,069 - 15,974,865 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2215,950,463 - 15,974,865 (+)Ensemblpanpan1.1panPan2
Il17ra
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945110,779,728 - 110,802,955 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936807143,165 - 165,820 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL17RA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl569,461,290 - 69,480,112 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1569,461,280 - 69,480,343 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Il17ra
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473510,138,418 - 10,164,198 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473510,139,787 - 10,164,074 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IL17RA
105 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 12 6 10 6
Low 6 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014108602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038514151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038642012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000025513   ⟹   ENSCAFP00000023688
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2744,799,550 - 44,811,064 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000025514   ⟹   ENSCAFP00000023689
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2744,799,550 - 44,811,064 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000061994   ⟹   ENSCAFP00000050281
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2744,799,550 - 44,811,064 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000066178   ⟹   ENSCAFP00000047008
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2744,799,550 - 44,811,064 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000067150   ⟹   ENSCAFP00000058988
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2744,799,550 - 44,811,064 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000086042   ⟹   ENSCAFP00000045604
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2744,791,066 - 44,811,064 (+)Ensembl
RefSeq Acc Id: XM_038439505   ⟹   XP_038295433
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02745,159,783 - 45,182,452 (+)NCBI
RefSeq Acc Id: XM_038439506   ⟹   XP_038295434
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02745,159,783 - 45,182,452 (+)NCBI
RefSeq Acc Id: XM_038439507   ⟹   XP_038295435
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02745,159,783 - 45,182,452 (+)NCBI
RefSeq Acc Id: XM_038459578   ⟹   XP_038315506
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha271,866,105 - 1,888,771 (-)NCBI
RefSeq Acc Id: XM_038459579   ⟹   XP_038315507
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha271,866,105 - 1,888,771 (-)NCBI
RefSeq Acc Id: XM_038459580   ⟹   XP_038315508
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha271,866,105 - 1,888,771 (-)NCBI
RefSeq Acc Id: XM_038514149   ⟹   XP_038370077
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12745,089,350 - 45,111,971 (+)NCBI
RefSeq Acc Id: XM_038514150   ⟹   XP_038370078
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12745,089,350 - 45,111,971 (+)NCBI
RefSeq Acc Id: XM_038514151   ⟹   XP_038370079
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12745,089,350 - 45,111,971 (+)NCBI
RefSeq Acc Id: XM_038576267   ⟹   XP_038432195
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0271,223,566 - 1,246,226 (-)NCBI
RefSeq Acc Id: XM_038576268   ⟹   XP_038432196
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0271,223,566 - 1,246,226 (-)NCBI
RefSeq Acc Id: XM_038576269   ⟹   XP_038432197
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0271,223,566 - 1,246,226 (-)NCBI
RefSeq Acc Id: XM_038642010   ⟹   XP_038497938
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02745,061,199 - 45,083,837 (+)NCBI
RefSeq Acc Id: XM_038642011   ⟹   XP_038497939
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02745,061,199 - 45,083,837 (+)NCBI
RefSeq Acc Id: XM_038642012   ⟹   XP_038497940
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02745,061,199 - 45,083,837 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000023688   ⟸   ENSCAFT00000025513
RefSeq Acc Id: ENSCAFP00000023689   ⟸   ENSCAFT00000025514
RefSeq Acc Id: ENSCAFP00000045604   ⟸   ENSCAFT00000086042
RefSeq Acc Id: ENSCAFP00000058988   ⟸   ENSCAFT00000067150
RefSeq Acc Id: ENSCAFP00000050281   ⟸   ENSCAFT00000061994
RefSeq Acc Id: ENSCAFP00000047008   ⟸   ENSCAFT00000066178
RefSeq Acc Id: XP_038370077   ⟸   XM_038514149
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038370079   ⟸   XM_038514151
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038370078   ⟸   XM_038514150
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038497938   ⟸   XM_038642010
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038497940   ⟸   XM_038642012
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038497939   ⟸   XM_038642011
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038295433   ⟸   XM_038439505
- Peptide Label: isoform X1
- UniProtKB: A0A8I3Q725 (UniProtKB/TrEMBL),   A0A8C0PSE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295435   ⟸   XM_038439507
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PSE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295434   ⟸   XM_038439506
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PSE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315507   ⟸   XM_038459579
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PSE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315508   ⟸   XM_038459580
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PSE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315506   ⟸   XM_038459578
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PZW5 (UniProtKB/TrEMBL),   A0A8C0PSE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432196   ⟸   XM_038576268
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PSE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432197   ⟸   XM_038576269
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PSE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432195   ⟸   XM_038576267
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PSE9 (UniProtKB/TrEMBL)
Protein Domains
SEFIR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016076 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030026192 UniProtKB/TrEMBL
  ENSCAFG00040018093 UniProtKB/TrEMBL
  ENSCAFG00845030604 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025513.5 UniProtKB/TrEMBL
  ENSCAFT00000025514.6 UniProtKB/TrEMBL
  ENSCAFT00000061994.2 UniProtKB/TrEMBL
  ENSCAFT00000086042.2 UniProtKB/TrEMBL
  ENSCAFT00030048476.1 UniProtKB/TrEMBL
  ENSCAFT00030048480.1 UniProtKB/TrEMBL
  ENSCAFT00030048483.1 UniProtKB/TrEMBL
  ENSCAFT00030048485.1 UniProtKB/TrEMBL
  ENSCAFT00030048488.1 UniProtKB/TrEMBL
  ENSCAFT00030048491.1 UniProtKB/TrEMBL
  ENSCAFT00030048494.1 UniProtKB/TrEMBL
  ENSCAFT00040033697.1 UniProtKB/TrEMBL
  ENSCAFT00845054292.1 UniProtKB/TrEMBL
  ENSCAFT00845054309 ENTREZGENE
  ENSCAFT00845054309.1 UniProtKB/TrEMBL
  ENSCAFT00845054316 ENTREZGENE
  ENSCAFT00845054316.1 UniProtKB/TrEMBL
  ENSCAFT00845054327 ENTREZGENE
  ENSCAFT00845054327.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.2150 UniProtKB/TrEMBL
  2.60.40.2160 UniProtKB/TrEMBL
  3.40.50.11530 UniProtKB/TrEMBL
InterPro IL-17_rcpt-like UniProtKB/TrEMBL
  IL17R_fnIII_D1 UniProtKB/TrEMBL
  IL17RA/B_FnIII-like_1_sf UniProtKB/TrEMBL
  IL17RA/B_FnIII-like_2_sf UniProtKB/TrEMBL
  SEFIR_dom UniProtKB/TrEMBL
NCBI Gene IL17RA ENTREZGENE
PANTHER INTERLEUKIN-17 RECEPTOR A UniProtKB/TrEMBL
  PTHR15583 UniProtKB/TrEMBL
Pfam IL17R_fnIII_D1 UniProtKB/TrEMBL
  IL17R_fnIII_D2 UniProtKB/TrEMBL
  SEFIR UniProtKB/TrEMBL
PROSITE SEFIR UniProtKB/TrEMBL
UniProt A0A8C0PJ12_CANLF UniProtKB/TrEMBL
  A0A8C0PKL0_CANLF UniProtKB/TrEMBL
  A0A8C0PN97_CANLF UniProtKB/TrEMBL
  A0A8C0PSE9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PVJ1_CANLF UniProtKB/TrEMBL
  A0A8C0PZW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RU50_CANLF UniProtKB/TrEMBL
  A0A8I3Q3Z9_CANLF UniProtKB/TrEMBL
  A0A8I3Q725 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QSY6_CANLF UniProtKB/TrEMBL
  A0A8I3SCR1_CANLF UniProtKB/TrEMBL
  A0A8P0NHH5_CANLF UniProtKB/TrEMBL
  A0A8P0NHP7_CANLF UniProtKB/TrEMBL
  A0A8P0P033_CANLF UniProtKB/TrEMBL
  A0A8P0SYX1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:41946 ENTREZGENE