CIMAP3 (ciliary microtubule associated protein 3)

Advanced Search (OLGA)

Gene: CIMAP3 (ciliary microtubule associated protein 3) Chlorocebus sabaeus

Analyze

Symbol:

CIMAP3

Name:

ciliary microtubule associated protein 3

RGD ID:

18783597

Description:

ENCODES a protein that exhibits beta-tubulin binding (inferred); cytoskeletal protein binding (inferred); gamma-tubulin binding (inferred); INVOLVED IN cilium organization (ortholog); embryonic heart tube left/right pattern formation (ortholog); positive regulation of kinase activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN ciliary basal body (inferred); nucleus (inferred); trans-Golgi network (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

PIFO; primary cilia formation; protein pitchfork

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	22,250,933 - 22,269,420 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	22,249,682 - 22,256,695 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	36,222,418 - 36,229,451 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium organization (IEA,ISO)

embryonic heart tube left/right pattern formation (IEA,ISO)

positive regulation of kinase activity (ISO)

regulation of cell projection organization (IEA)

Cellular Component

ciliary basal body (IEA)

nucleus (IEA)

trans-Golgi network (IEA)

Molecular Function

beta-tubulin binding (IEA)

cytoskeletal protein binding (IEA)

gamma-tubulin binding (IEA)

kinesin binding (IEA)

protein binding (ISO)

protein kinase binding (IEA)

small GTPase binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CIMAP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	22,250,933 - 22,269,420 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	22,249,682 - 22,256,695 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	36,222,418 - 36,229,451 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CIMAP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	111,324,663 - 111,353,017 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	111,346,600 - 111,353,013 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	111,889,182 - 111,895,639 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	111,690,771 - 111,697,158 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	110,136,149 - 110,142,593 (+)	NCBI		Celera
Cytogenetic Map	1	p13.2	NCBI
HuRef	1	109,760,637 - 109,767,081 (+)	NCBI		HuRef
CHM1_1	1	112,004,230 - 112,010,674 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	111,339,352 - 111,367,700 (+)	NCBI		T2T-CHM13v2.0

Cimap3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	105,904,273 - 105,921,962 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	105,904,273 - 105,921,962 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	105,996,957 - 106,014,646 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	105,996,957 - 106,014,646 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	105,799,588 - 105,817,564 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	105,799,588 - 105,817,564 (-)	NCBI		MGSCv36	mm8
Celera	3	108,188,382 - 108,206,446 (-)	NCBI		Celera
Cytogenetic Map	3	F2.2	NCBI
cM Map	3	46.47	NCBI

Cimap3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	196,164,103 - 196,181,466 (-)	NCBI		GRCr8
mRatBN7.2	2	193,475,785 - 193,493,092 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	193,475,782 - 193,493,139 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	208,616,592 - 208,633,961 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	208,616,589 - 208,633,945 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	228,037,805 - 228,055,061 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	201,247,609 - 201,254,234 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	186,178,234 - 186,184,986 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Cimap3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	14,892,459 - 14,898,092 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	14,888,554 - 14,898,274 (+)	NCBI	ChiLan1.0	ChiLan1.0

CIMAP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	115,691,179 - 115,719,510 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	114,841,515 - 114,868,346 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	113,991,254 - 113,997,982 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	126,349,244 - 126,355,968 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	126,349,244 - 126,355,968 (-)	Ensembl	panpan1.1		panPan2

LOC611691
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	40,730,086 - 40,750,906 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	43,508,218 - 43,528,999 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	41,062,527 - 41,082,948 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	6	40,744,944 - 40,804,021 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	40,753,322 - 40,774,135 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	41,188,633 - 41,209,440 (-)	NCBI		UU_Cfam_GSD_1.0

CIMAP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	4	109,021,109 - 109,033,715 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	119,397,201 - 119,407,103 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Cimap3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	7,091,047 - 7,097,970 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	7,080,535 - 7,096,603 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007977590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007977591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000016957 ⟹ ENSCSAP00000016452

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	22,249,682 - 22,256,695 (-)	Ensembl

RefSeq Acc Id:

XM_007977591 ⟹ XP_007975782

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	22,250,933 - 22,256,811 (-)	NCBI
Vero_WHO_p1.0	NW_023666038	36,222,418 - 36,229,451 (+)	NCBI

Sequence:

show sequence

CTGTCAGCACAACTCCGCCCCCTACTCTTCTGCTGCGGCGTTGCCCAGGGAGTCCACCCCCGTA
CGCAGCAGCGGCTGCGTCTTTTTACTTTCACTTTACTTGCTGCTGGCCCGGACTTTGGGACGTT
CAGAACCCAATTGTCCTTCCCTGTACAACAGCGCATTCCTCTTGACTCAGCTTCCAAAGCTATT
TGCCACCCCGTCAACCCTGCAGCCCCTACAGCCGCGAATCCAGGAAACCCTCTACCCGCAGCCC
AGCTACTGAGTTTACAATCCCCTGGGCTTTGGGCTCCAAGGTGCGGGTTCCTGCCCCAGTAGTG
GCTCAGTGGACGCCGCAGCTTGTCGCGCAGACGCGCTCGGGCCCTCTCCCCCTCCCGGCGCTCC
GCAACTGGGAATCACGGGACTAGCCTCCGTTTCCTTGGCAACGCAGTACACAAGTGCTAGCCCT
AGCAGCTCGCGATGTGCTTCAGCAAAGCAGACGCCGAGGATAACTACCCTTTTGGAACATGTCA
ACAGAGGAAACTTTTTCCTCACTTCCATCCCCCAAATTTGATTGGGAACAAGTTTGTCCCTCTT
AGGGGATCACCCCACAGAGGGCCTGGGTGTTACTTATCAGATGGATACGGCTTGGCATACGACT
TATCTAAGATCCCAACCAGTATAAAAGGATATACTTTGGGAGCCAGAACAGCTGTGAGGTTTAA
GCCAATACAGAAGGAAGTGACACCTGCTGCAGGCATGTACCAGAAAGTAAGTCCTCAGCAGGAG
AAACACAAACAAAATTTTGCTCCATTTAATGTCTTGGTGCCTCGATTTAAGAACTACCCAAAGG
ACACTTACTATCCCAGCCCTGGCGCATACAACCCAGAGAAGAAGCCACCTCCAAAAATTGCCTG
GCCAATGAAATTTGGATCTCCAGACTGGGCTCAGGTTCCATGTCTACAGAAAAGGACCCTAAAA
GCTGAGCTGTCCACAGACAAAGACTTTAGAAAGCATCGGAACCGTGTGGCCTACCTAAGCCTGT
ATTATAATTGAGCAGCTGTGACTACCTTCACATGCTCCTATTATACACAGACTCTCCAGGACTG
AGGACAGAACTGCTCTTCTTCTTCTGCATTACTGTGCCCCCTTGTCTGGCAGCCTGGAGCCCAG
GGAGGGACAAGGGGCTTATAGCTGCTGTATGAGAACATAAAGACTAGTGCACAGTGCTATCTCC
ATCTACTGGCTTGTGGCATACATGGGCGCGTCTGGGTCTGTGGGTTCCTGTTGGGTGCTGAGTT
GGGTGATTTCATTTTAATGAAATATTTGTGGGCCCCTGCTCTCTAGTTCTAATTGCCAGGTGAC
AATTTTATATATTCTACCACTAGCTCTGGTCATAGGAGACTGTTAGCCTGTGCATATCAAGGGT
TTGGATGGGATTTGGGCTTACGAGATACAGAAAACACTTAAGGCAGATTAAAACATGTATTGGA
GCTCTTCTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007975782	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000016452
	ENSCSAP00000016452.1

RefSeq Acc Id:	XP_007975782 ⟸ XM_007977591
- UniProtKB:	A0A0D9S6G3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000016452 ⟸ ENSCSAT00000016957

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000001574	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000016957.1	UniProtKB/TrEMBL
InterPro	Pitchfork	UniProtKB/TrEMBL
NCBI Gene	PIFO	ENTREZGENE
PANTHER	PROTEIN PITCHFORK	UniProtKB/TrEMBL
	PTHR31508	UniProtKB/TrEMBL
UniProt	A0A0D9S6G3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-05-09	CIMAP3	ciliary microtubule associated protein 3	PIFO	primary cilia formation	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar