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Gene: Cimap3 (ciliary microtubule associated protein 3) Mus musculus

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Symbol:

Cimap3

Name:

ciliary microtubule associated protein 3

RGD ID:

1615808

MGI Page

MGI

Description:

Enables cytoskeletal protein binding activity and enzyme binding activity. Involved in regulation of cell projection organization. Acts upstream of or within with a positive effect on cilium organization. Acts upstream of or within embryonic heart tube left/right pattern formation. Located in ciliary basal body; nucleus; and trans-Golgi network. Is expressed in several structures, including brain ventricle and choroid plexus; embryo ectoderm; nasal cavity epithelium; testis; and upper jaw. Orthologous to human CIMAP3 (ciliary microtubule associated protein 3).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

1700027A23Rik; ciliary microtubule-associated protein 3; MGC58817; Pifo; pitch; pitchfork; primary cilia formation; uncharacterized protein C1orf88 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	105,904,273 - 105,921,962 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	105,904,273 - 105,921,962 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	105,996,957 - 106,014,646 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	105,996,957 - 106,014,646 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	105,799,588 - 105,817,564 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	105,799,588 - 105,817,564 (-)	NCBI		MGSCv36	mm8
Celera	3	108,188,382 - 108,206,446 (-)	NCBI		Celera
Cytogenetic Map	3	F2.2	NCBI
cM Map	3	46.47	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cimap3	Mouse	autistic disorder		ISO	RGD:1604536	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106\|PMID:30208311

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cimap3	Mouse	4,4'-sulfonyldiphenol	increases expression	EXP		6480464	bisphenol S results in increased expression of CIMAP3 mRNA	CTD	PMID:30951980
Cimap3	Mouse	4-hydroxyphenyl retinamide	increases expression	EXP		6480464	Fenretinide results in increased expression of CIMAP3 mRNA	CTD	PMID:28973697
Cimap3	Mouse	all-trans-retinoic acid	multiple interactions	EXP		6480464	[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of PIFO mRNA	CTD	PMID:36189433
Cimap3	Mouse	amiodarone	increases expression	ISO	RGD:1604536	6480464	Amiodarone results in increased expression of CIMAP3 mRNA	CTD	PMID:19774075
Cimap3	Mouse	belinostat	increases expression	ISO	RGD:1604536	6480464	belinostat results in increased expression of CIMAP3 mRNA	CTD	PMID:26272509
Cimap3	Mouse	belinostat	multiple interactions	ISO	RGD:1604536	6480464	[NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression more ...	CTD	PMID:27188386
Cimap3	Mouse	benzo[a]pyrene	decreases methylation	ISO	RGD:1604536	6480464	Benzo(a)pyrene results in decreased methylation of CIMAP3 promoter	CTD	PMID:27901495
Cimap3	Mouse	benzo[a]pyrene	increases expression	ISO	RGD:1604536	6480464	Benzo(a)pyrene results in increased expression of CIMAP3 mRNA	CTD	PMID:32234424
Cimap3	Mouse	bis(2-ethylhexyl) phthalate	increases expression	ISO	RGD:1604536	6480464	Diethylhexyl Phthalate results in increased expression of CIMAP3 mRNA	CTD	PMID:31163220
Cimap3	Mouse	bisphenol A	increases expression	ISO	RGD:1604536	6480464	bisphenol A results in increased expression of CIMAP3 mRNA	CTD	PMID:31715268
Cimap3	Mouse	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of CIMAP3 mRNA	CTD	PMID:30951980\|PMID:32156529
Cimap3	Mouse	bisphenol A	decreases expression	ISO	RGD:1586282	6480464	bisphenol A results in decreased expression of CIMAP3 mRNA	CTD	PMID:25181051\|PMID:29097150
Cimap3	Mouse	bisphenol F	increases expression	EXP		6480464	bisphenol F results in increased expression of CIMAP3 mRNA	CTD	PMID:30951980
Cimap3	Mouse	carbon nanotube	decreases expression	EXP		6480464	Nanotubes, Carbon results in decreased expression of CIMAP3 mRNA	CTD	PMID:25554681
Cimap3	Mouse	Cuprizon	increases expression	ISO	RGD:1586282	6480464	Cuprizone results in increased expression of CIMAP3 mRNA	CTD	PMID:26577399
Cimap3	Mouse	cyclosporin A	decreases expression	ISO	RGD:1604536	6480464	Cyclosporine results in decreased expression of CIMAP3 mRNA	CTD	PMID:27989131
Cimap3	Mouse	DDE	decreases expression	ISO	RGD:1604536	6480464	Dichlorodiphenyl Dichloroethylene results in decreased expression of PIFO mRNA	CTD	PMID:38568856
Cimap3	Mouse	dorsomorphin	multiple interactions	ISO	RGD:1604536	6480464	[NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression more ...	CTD	PMID:27188386
Cimap3	Mouse	doxorubicin	decreases expression	ISO	RGD:1604536	6480464	Doxorubicin results in decreased expression of CIMAP3 mRNA	CTD	PMID:29803840
Cimap3	Mouse	entinostat	increases expression	ISO	RGD:1604536	6480464	entinostat results in increased expression of CIMAP3 mRNA	CTD	PMID:26272509
Cimap3	Mouse	entinostat	multiple interactions	ISO	RGD:1604536	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression more ...	CTD	PMID:27188386
Cimap3	Mouse	ethylparaben	increases expression	ISO	RGD:1604536	6480464	ethyl-p-hydroxybenzoate results in increased expression of CIMAP3 mRNA	CTD	PMID:37690743
Cimap3	Mouse	fenvalerate	increases expression	ISO	RGD:1586282	6480464	fenvalerate results in increased expression of CIMAP3 mRNA	CTD	PMID:30307764
Cimap3	Mouse	mercury dibromide	increases expression	ISO	RGD:1604536	6480464	mercuric bromide results in increased expression of CIMAP3 mRNA	CTD	PMID:26272509
Cimap3	Mouse	mercury dibromide	multiple interactions	ISO	RGD:1604536	6480464	[NOG protein co-treated with mercuric bromide co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ...	CTD	PMID:27188386
Cimap3	Mouse	methyl methanesulfonate	increases expression	ISO	RGD:1604536	6480464	Methyl Methanesulfonate results in increased expression of CIMAP3 mRNA	CTD	PMID:23649840
Cimap3	Mouse	mono(2-ethylhexyl) phthalate	decreases expression	EXP		6480464	mono-(2-ethylhexyl)phthalate results in decreased expression of PIFO mRNA	CTD	PMID:36189433
Cimap3	Mouse	mono(2-ethylhexyl) phthalate	multiple interactions	EXP		6480464	[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of PIFO mRNA	CTD	PMID:36189433
Cimap3	Mouse	okadaic acid	increases expression	ISO	RGD:1604536	6480464	Okadaic Acid results in increased expression of CIMAP3 mRNA	CTD	PMID:38832940
Cimap3	Mouse	panobinostat	multiple interactions	ISO	RGD:1604536	6480464	[NOG protein co-treated with Panobinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression more ...	CTD	PMID:27188386
Cimap3	Mouse	phenylmercury acetate	increases expression	ISO	RGD:1604536	6480464	Phenylmercuric Acetate results in increased expression of CIMAP3 mRNA	CTD	PMID:26272509
Cimap3	Mouse	phenylmercury acetate	multiple interactions	ISO	RGD:1604536	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ...	CTD	PMID:27188386
Cimap3	Mouse	SB 431542	multiple interactions	ISO	RGD:1604536	6480464	[NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression more ...	CTD	PMID:27188386
Cimap3	Mouse	sunitinib	decreases expression	ISO	RGD:1604536	6480464	Sunitinib results in decreased expression of CIMAP3 mRNA	CTD	PMID:31533062
Cimap3	Mouse	titanium dioxide	decreases expression	EXP		6480464	titanium dioxide results in decreased expression of CIMAP3 mRNA	CTD	PMID:35295148
Cimap3	Mouse	urethane	increases expression	ISO	RGD:1604536	6480464	Urethane results in increased expression of CIMAP3 mRNA	CTD	PMID:28818685
Cimap3	Mouse	valproic acid	decreases methylation	ISO	RGD:1604536	6480464	Valproic Acid results in decreased methylation of CIMAP3 gene	CTD	PMID:29154799
Cimap3	Mouse	valproic acid	affects expression	ISO	RGD:1604536	6480464	Valproic Acid affects the expression of CIMAP3 mRNA	CTD	PMID:25979313
Cimap3	Mouse	valproic acid	increases expression	ISO	RGD:1604536	6480464	Valproic Acid results in increased expression of CIMAP3 mRNA	CTD	PMID:19101580\|PMID:23179753\|PMID:24383497\|PMID:26272509\|PMID:27188386\|PMID:28001369
Cimap3	Mouse	valproic acid	multiple interactions	ISO	RGD:1604536	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ...	CTD	PMID:27188386
Cimap3	Mouse	vorinostat	multiple interactions	ISO	RGD:1604536	6480464	[NOG protein co-treated with Vorinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression more ...	CTD	PMID:27188386

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cimap3	Mouse	cilium organization	acts_upstream_of_or_within_positive_effect	IMP	MGI:4819764	2290270	PMID:20643351	MGI	PMID:20643351
Cimap3	Mouse	embryonic heart tube left/right pattern formation	acts_upstream_of_or_within	IMP	MGI:4819764	2290270	PMID:20643351	MGI	PMID:20643351
Cimap3	Mouse	positive regulation of kinase activity	involved_in	ISS	UniProtKB:Q8TCI5	2290270		UniProt	GO_REF:0000024
Cimap3	Mouse	positive regulation of kinase activity	involved_in	ISO	UniProtKB:Q8TCI5	2290270		GO_Central	GO_REF:0000119
Cimap3	Mouse	regulation of cell projection organization	involved_in	IMP		2290270	PMID:20643351	UniProt	PMID:20643351
Cimap3	Mouse	regulation of cell projection organization	involved_in	IBA	PANTHER:PTN002051976\|MGI:1923670	2290270		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cimap3	Mouse	ciliary basal body	located_in	IDA		2290270	PMID:20643351	UniProt	PMID:20643351
Cimap3	Mouse	cytoplasmic vesicle	located_in	IEA	UniProtKB-KW:KW-0968	2290270		UniProt	GO_REF:0000043
Cimap3	Mouse	Golgi stack	located_in	IEA	UniProtKB-SubCell:SL-0135	2290270		UniProt	GO_REF:0000044
Cimap3	Mouse	nucleus	located_in	IDA		2290270	PMID:20643351	UniProt	PMID:20643351
Cimap3	Mouse	trans-Golgi network	located_in	IDA		2290270	PMID:20643351	UniProt	PMID:20643351

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cimap3	Mouse	beta-tubulin binding	enables	IDA		2290270	PMID:20643351	UniProt	PMID:20643351
Cimap3	Mouse	beta-tubulin binding	enables	ISO	UniProtKB:Q8TCI5	2290270		GO_Central	GO_REF:0000119
Cimap3	Mouse	cytoskeletal protein binding	enables	IBA	PANTHER:PTN002051976\|MGI:1923670\|UniProtKB:Q8TCI5	2290270		GO_Central	GO_REF:0000033
Cimap3	Mouse	gamma-tubulin binding	enables	IDA		2290270	PMID:20643351	UniProt	PMID:20643351
Cimap3	Mouse	gamma-tubulin binding	enables	ISO	UniProtKB:Q8TCI5	2290270		GO_Central	GO_REF:0000119
Cimap3	Mouse	kinesin binding	enables	ISO	UniProtKB:Q8TCI5	2290270		GO_Central	GO_REF:0000119
Cimap3	Mouse	kinesin binding	enables	IPI	UniProtKB:Q9Y496	2290270	PMID:20643351	UniProt	PMID:20643351
Cimap3	Mouse	protein binding	enables	IPI	UniProtKB:Q12798\|UniProtKB:Q3SXY8	2290270	PMID:20643351	UniProt	PMID:20643351
Cimap3	Mouse	protein kinase binding	enables	ISO	UniProtKB:Q8TCI5	2290270		GO_Central	GO_REF:0000119
Cimap3	Mouse	protein kinase binding	enables	IPI	UniProtKB:O14965	2290270	PMID:20643351	UniProt	PMID:20643351
Cimap3	Mouse	small GTPase binding	enables	IPI	UniProtKB:P20340\|UniProtKB:P61006	2290270	PMID:20643351	UniProt	PMID:20643351
Cimap3	Mouse	small GTPase binding	enables	ISO	UniProtKB:Q8TCI5	2290270		GO_Central	GO_REF:0000119

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cimap3	Mouse	abnormal cell physiology		IAGP		5509061		MGI	PMID:20643351
Cimap3	Mouse	abnormal cilium morphology		IAGP		5509061		MGI	PMID:20643351
Cimap3	Mouse	abnormal left-right axis patterning		IAGP		5509061		MGI	PMID:20643351
Cimap3	Mouse	abnormal mitosis		IAGP		5509061		MGI	PMID:20643351
Cimap3	Mouse	abnormal motile primary cilium morphology		IAGP		5509061		MGI	PMID:20643351
Cimap3	Mouse	abnormal motile primary cilium physiology		IAGP		5509061		MGI	PMID:20643351
Cimap3	Mouse	abnormal primitive node morphology		IAGP		5509061		MGI	PMID:20643351
Cimap3	Mouse	double outlet right ventricle		IAGP		5509061		MGI	PMID:20643351
Cimap3	Mouse	embryonic lethality during organogenesis, complete penetrance		IAGP		5509061		MGI	PMID:20643351
Cimap3	Mouse	male infertility		IAGP		5509061		MGI	PMID:20643351

#	Reference Title	Reference Citation
1.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11125038	PMID:11217851	PMID:12040188	PMID:12466851	PMID:12477932	PMID:15489334	PMID:16141072	PMID:16141073
PMID:17971504	PMID:18973680	PMID:20643351	PMID:21267068	PMID:21677750	PMID:21873635	PMID:22008794	PMID:25080064	PMID:26901434	PMID:31010494	PMID:33200981	PMID:37142655

Cimap3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	105,904,273 - 105,921,962 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	105,904,273 - 105,921,962 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	105,996,957 - 106,014,646 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	105,996,957 - 106,014,646 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	105,799,588 - 105,817,564 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	105,799,588 - 105,817,564 (-)	NCBI		MGSCv36	mm8
Celera	3	108,188,382 - 108,206,446 (-)	NCBI		Celera
Cytogenetic Map	3	F2.2	NCBI
cM Map	3	46.47	NCBI

CIMAP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	111,324,663 - 111,353,017 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	111,346,600 - 111,353,013 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	111,889,182 - 111,895,639 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	111,690,771 - 111,697,158 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	110,136,149 - 110,142,593 (+)	NCBI		Celera
Cytogenetic Map	1	p13.2	NCBI
HuRef	1	109,760,637 - 109,767,081 (+)	NCBI		HuRef
CHM1_1	1	112,004,230 - 112,010,674 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	111,339,352 - 111,367,700 (+)	NCBI		T2T-CHM13v2.0

Cimap3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	196,164,103 - 196,181,466 (-)	NCBI		GRCr8
mRatBN7.2	2	193,475,785 - 193,493,092 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	193,475,782 - 193,493,139 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	208,616,592 - 208,633,961 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	208,616,589 - 208,633,945 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	228,037,805 - 228,055,061 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	201,247,609 - 201,254,234 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	186,178,234 - 186,184,986 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Cimap3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	14,892,459 - 14,898,092 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	14,888,554 - 14,898,274 (+)	NCBI	ChiLan1.0	ChiLan1.0

CIMAP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	115,691,179 - 115,719,510 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	114,841,515 - 114,868,346 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	113,991,254 - 113,997,982 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	126,349,244 - 126,355,968 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	126,349,244 - 126,355,968 (-)	Ensembl	panpan1.1		panPan2

LOC611691
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	40,730,086 - 40,750,906 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	43,508,218 - 43,528,999 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	41,062,527 - 41,082,948 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	6	40,744,944 - 40,804,021 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	40,753,322 - 40,774,135 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	41,188,633 - 41,209,440 (-)	NCBI		UU_Cfam_GSD_1.0

CIMAP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	4	109,021,109 - 109,033,715 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	119,397,201 - 119,407,103 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CIMAP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	22,250,933 - 22,269,420 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	22,249,682 - 22,256,695 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	36,222,418 - 36,229,451 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cimap3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	7,091,047 - 7,097,970 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	7,080,535 - 7,096,603 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Cimap3
501 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	286
Count of miRNA genes:	138
Interacting mature miRNAs:	142
Transcripts:	ENSMUST00000010280, ENSMUST00000066319
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301392	Eae3_m	susceptibility to experimental allergic encephalomyelitis 3 (mouse)			Not determined		3	79548730	113548837	Mouse
1301904	Iba2_m	induction of brown adipocytes 2 (mouse)			Not determined		3	82147043	116147184	Mouse
1300752	Ap6q_m	alcohol preference 6 QTL (mouse)			Not determined		3	100372912	147045722	Mouse
26884382	Bzwq1_m	bi-zygomatic width QTL 1, 5 week (mouse)					3	52207421	137205761	Mouse
11041900	Lmr11a_m	leishmaniasis resistance 11a (mouse)					3	83463991	117464137	Mouse
14746984	Manh54_m	mandible shape 54 (mouse)					3	85289152	119289152	Mouse
12738440	Twq3_m	testis weight QTL 3 (mouse)					3	87228015	121228015	Mouse
25314313	Syncl1_m	synaptonemal complex length 1 (mouse)					3	67907333	128393649	Mouse
1301272	Cfsw1_m	cystic fibrosis survival to weaning 1 (mouse)			Not determined		3	83882912	117883044	Mouse
11049572	Lmr11c_m	leishmaniasis resistance 11c (mouse)					3	72139967	106140094	Mouse
26884436	Zlq3_m	zygomatic length QTL 3, 10 week (mouse)					3	3265060	142405761	Mouse
11533920	Mvb3_m	modifier of vibrator 3 (mouse)					3	98635284	132635383	Mouse
26884427	Cvht4_m	cranial vault height 4, 10 week (mouse)					3	16054164	109707316	Mouse
10766455	Sle22_m	systematic lupus erythematosus susceptibility 22 (mouse)					3	90376936	124377072	Mouse
14747001	Mancz4_m	mandible centroid size 4 (mouse)					3	90378017	124378017	Mouse
26884419	Bzwq6_m	bi-zygomatic width QTL 6, 10 week (mouse)					3	100607316	137205761	Mouse
1301705	Sles3_m	systemic lupus erythmatosus suppressor 3 (mouse)			Not determined		3	37174862	143353183	Mouse
13207570	Tcq12_m	total cholesterol QTL 12 (mouse)					3	16504164	130163649	Mouse
1357583	Sle18_m	systematic lupus erythematosus susceptibility 18 (mouse)			Not determined		3	87208904	125316236	Mouse
12792984	Modn1_m	modifier of Dstn neovascularization 1 (mouse)					3	98635284	132635383	Mouse
26884422	Cvht7_m	cranial vault height 7, 16 week (mouse)					3	28954149	118893649	Mouse
4142178	Ctrq2_m	C. trachomatis resistance QTL 2 (mouse)			Not determined		3	89139967	137453008	Mouse
1300595	Tmevd2_m	Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)			Not determined		3	75463302	109463549	Mouse
1300982	Lmr11_m	leishmaniasis resistance 11 (mouse)			Not determined		3	72139967	106140094	Mouse
1301947	Pcfm3_m	periosteal circumference and femur length 3 (mouse)			Not determined		3	81084652	115084797	Mouse
10043955	Wt10q4_m	body weight, 10 weeks, QTL 4 (mouse)			Not determined		3	98624041	132624197	Mouse
4142099	Cq3_m	cholesterol QTL 3 (mouse)			Not determined		3	84888918	118889067	Mouse
11039512	Ltpr3b_m	Leishmania tropica response 3b (mouse)					3	83463991	117464137	Mouse
1302114	Tbs1_m	tuberculosis severity 1 (mouse)			Not determined		3	98924105	132924250	Mouse
27226733	Tibmd6_m	tibia midshaft diameter 6, 16 week (mouse)					3	101307316	149805637	Mouse
27226732	Tibmd3_m	tibia midshaft diameter 3, 10 week (mouse)					3	96607316	147805636	Mouse
1301349	Pgia26_m	proteoglycan induced arthritis 26 (mouse)			Not determined		3	92251533	126251650	Mouse
1302052	Etohcta4_m	ethanol conditioned taste aversion 4 (mouse)			Not determined		3	91000105	125008748	Mouse
1302056	Orgwq4_m	organ weight QTL 4 (mouse)			Not determined		3	30067588	147304689	Mouse
11039507	Ltpr3g_m	Leishmania tropica response 3g (mouse)					3	83463991	117464137	Mouse
11039508	Ltpr3f_m	Leishmania tropica response 3f (mouse)					3	83463991	117464137	Mouse
11039509	Ltpr3e_m	Leishmania tropica response 3e (mouse)					3	83463991	117464137	Mouse
11039510	Ltpr3d_m	Leishmania tropica response 3d (mouse)					3	83463991	117464137	Mouse
1301805	Mors2_m	modifier of obesity related sterility 2 (mouse)			Not determined		3	103482659	137482783	Mouse
13208566	Bmiq5_m	body mass index QTL 5 (mouse)					3	40954435	115793649	Mouse
11039511	Ltpr3c_m	Leishmania tropica response 3c (mouse)					3	83463991	117464137	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001200028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_029604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC025786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK006407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW492850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW519725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC049757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM237137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM237138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000010280 ⟹ ENSMUSP00000010280

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	105,904,273 - 105,921,962 (-)	Ensembl
GRCm38.p6 Ensembl	3	105,996,957 - 106,014,646 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000066319 ⟹ ENSMUSP00000069454

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	105,904,282 - 105,908,813 (-)	Ensembl
GRCm38.p6 Ensembl	3	105,996,966 - 106,001,497 (-)	Ensembl

RefSeq Acc Id:

NM_001200028 ⟹ NP_001186957

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	105,904,273 - 105,921,962 (-)	NCBI

Sequence:

show sequence

TTCATTTTCTTGTTTAAAGCCTATGAAGGAAGTAGTGGCTCATGAAGACAGAAAATGAGGAGGACGTCAAGCCCCCTGAAAGTTGTCATGCAATGCAGTTACTATTCAAATCTCTTGAGGCATCTGAA
AGGGCTAAGGTAGAAGAAGAACTGAAAAAGACCAAAGAGAATGAATTCACACAACGGAATGAACATCATGCTCTTCGGGACATCACTCATGGGAAGGTGAATAATTACTCCTTTGGAACACGTCAAGC
GAGGAAACTCTTTCCTCACTACCATCCCCCAACCTGGCTGGGGAACCTGTATCTCCCTCTTAGGGGAATGCCCCACACAGGCCCTGGGTGTTATGCAGCAGCAACAGATTGGAATGGTTTGGCATATA
ATCTATCGAAAGTCCCAACCAGTACGAAAGGCTATGCTATTGGAGCCAGGACAGCTGTGAGGTTTAAGCCAATCAGCAAGGATGTGACACCATACCCAGGGATGTATCAGAAAGTTGATACTTTGAGT
GAAAAACACAAAAAAAGCTTTGCTCCATTTAATATCTTGATGCCTCGATTTAGGAGTGCAGCAAAGGGTGATTCTTACCCCGGCCCTGGCACATACAATCCAGAGATGAAGTCAGTCCCAAAAGTTAC
TTGGCCAATGAAATTTGGATCTCCAGACTGGTCTCAGGTTCCATGTCTAGAGAAAAGGACTCTAAAGGCTGAGCTGTCCGCAGACAAGGACTTTAGAAAGCATCGTAGCCGTGTGGCCTACTTTAGCC
TATATTACCAGTGAAATGTAGGCACTGTCTTCACGTGCTGTCCTGACCACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTTCTGTGTTCCTCGGCCCTCTTGTCTGCCCATTTCGTGTCC
AGAGAGGGACAGGGTCTCATTGTCACCCTCCAAATACATAAAGGCTGGTTCAGAATGTTCAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_029604 ⟹ NP_083880

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	105,904,273 - 105,908,813 (-)	NCBI
GRCm38	3	105,996,957 - 106,001,497 (-)	NCBI
MGSCv37	3	105,799,588 - 105,817,564 (-)	NCBI
Celera	3	108,188,382 - 108,206,446 (-)	NCBI
cM Map	3		ENTREZGENE

Sequence:

show sequence

CACAGAGCTAATCCTAGCACCCTGCAGGATGTGCTTCAGCAGAATAGGTAAGGAGAGTAGCAGAGATTTACAGAGCAGACAGCAGAAGAAGGGTAAGAAGAGCAGGAGAGATGAACACGGAGGAAATA
CCGGTTGCTCCTCCGCTCCGTGGAGTTACACCTGCTTTACAATGGAAGGTGAATAATTACTCCTTTGGAACACGTCAAGCGAGGAAACTCTTTCCTCACTACCATCCCCCAACCTGGCTGGGGAACCT
GTATCTCCCTCTTAGGGGAATGCCCCACACAGGCCCTGGGTGTTATGCAGCAGCAACAGATTGGAATGGTTTGGCATATAATCTATCGAAAGTCCCAACCAGTACGAAAGGCTATGCTATTGGAGCCA
GGACAGCTGTGAGGTTTAAGCCAATCAGCAAGGATGTGACACCATACCCAGGGATGTATCAGAAAGTTGATACTTTGAGTGAAAAACACAAAAAAAGCTTTGCTCCATTTAATATCTTGATGCCTCGA
TTTAGGAGTGCAGCAAAGGGTGATTCTTACCCCGGCCCTGGCACATACAATCCAGAGATGAAGTCAGTCCCAAAAGTTACTTGGCCAATGAAATTTGGATCTCCAGACTGGTCTCAGGTTCCATGTCT
AGAGAAAAGGACTCTAAAGGCTGAGCTGTCCGCAGACAAGGACTTTAGAAAGCATCGTAGCCGTGTGGCCTACTTTAGCCTATATTACCAGTGAAATGTAGGCACTGTCTTCACGTGCTGTCCTGACC
ACAGAGTCTCCAGAACTGAGGACATAATTGCTCCTGTATTTCTGTGTTCCTCGGCCCTCTTGTCTGCCCATTTCGTGTCCAGAGAGGGACAGGGTCTCATTGTCACCCTCCAAATACATAAAGGCTGG
TTCAGAATGTTCAAAAAAAAAAAAAAAAA

hide sequence


Protein RefSeqs	NP_001186957	(Get FASTA)	NCBI Sequence Viewer
	NP_083880	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH49757	(Get FASTA)	NCBI Sequence Viewer
	ADI86274	(Get FASTA)	NCBI Sequence Viewer
	ADI86275	(Get FASTA)	NCBI Sequence Viewer
	BAB24572	(Get FASTA)	NCBI Sequence Viewer
	EDL07534	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000010280
	ENSMUSP00000010280.5
	ENSMUSP00000069454
	ENSMUSP00000069454.7
GenBank Protein	Q9D9W1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_083880 ⟸ NM_029604
- Peptide Label:	isoform b
- UniProtKB:	Q9D9W1 (UniProtKB/Swiss-Prot), Q810M7 (UniProtKB/Swiss-Prot), D9J0A1 (UniProtKB/Swiss-Prot), D9J0A0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MNTEEIPVAPPLRGVTPALQWKVNNYSFGTRQARKLFPHYHPPTWLGNLYLPLRGMPHTGPGCYAAATDWNGLAYNLSKVPTSTKGYAIGARTAVRFKPISKDVTPYPGMYQKVDTLSEKHKKSFAPF NILMPRFRSAAKGDSYPGPGTYNPEMKSVPKVTWPMKFGSPDWSQVPCLEKRTLKAELSADKDFRKHRSRVAYFSLYYQ hide sequence

Ensembl Acc Id:

ENSMUSP00000069454 ⟸ ENSMUST00000066319

Ensembl Acc Id:

ENSMUSP00000010280 ⟸ ENSMUST00000010280

RefSeq Acc Id:	NP_001186957 ⟸ NM_001200028
- Peptide Label:	isoform a
- UniProtKB:	Q9D9W1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MKTENEEDVKPPESCHAMQLLFKSLEASERAKVEEELKKTKENEFTQRNEHHALRDITHGKVNNYSFGTRQARKLFPHYHPPTWLGNLYLPLRGMPHTGPGCYAAATDWNGLAYNLSKVPTSTKGYAI GARTAVRFKPISKDVTPYPGMYQKVDTLSEKHKKSFAPFNILMPRFRSAAKGDSYPGPGTYNPEMKSVPKVTWPMKFGSPDWSQVPCLEKRTLKAELSADKDFRKHRSRVAYFSLYYQ hide sequence

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9D9W1-F1-model_v2	AlphaFold	Q9D9W1	1-207	view protein structure

RGD ID:

6833160

Promoter ID:

MM_KWN:35668

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Lung

Transcripts:

NM_029604, XM_001480809_GM4537

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	3	105,804,031 - 105,804,531 (-)	MPROMDB

RGD ID:

6881958

Promoter ID:

EPDNEW_M4430

Type:

initiation region

Name:

Pifo_1

Description:

Mus musculus primary cilia formation , transcript variant 1,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M4431

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	3	106,001,488 - 106,001,548	EPDNEW

RGD ID:

6881960

Promoter ID:

EPDNEW_M4431

Type:

initiation region

Name:

Pifo_2

Description:

Mus musculus primary cilia formation , transcript variant 1,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M4430

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	3	106,014,635 - 106,014,695	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000010136	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000010280	ENTREZGENE
	ENSMUST00000010280.11	UniProtKB/Swiss-Prot
	ENSMUST00000066319	ENTREZGENE
	ENSMUST00000066319.8	UniProtKB/Swiss-Prot
InterPro	Pitchfork	UniProtKB/Swiss-Prot
	SHIPPO-rpt	UniProtKB/Swiss-Prot
KEGG Report	mmu:100503311	UniProtKB/Swiss-Prot
MGD	MGI:1923670	ENTREZGENE
NCBI Gene	Cimap3	ENTREZGENE
PANTHER	PROTEIN PITCHFORK	UniProtKB/Swiss-Prot
	PTHR31508	UniProtKB/Swiss-Prot
Pfam	SHIPPO-rpt	UniProtKB/Swiss-Prot
PhenoGen	Cimap3	PhenoGen
UniProt	D9J0A0	ENTREZGENE
	D9J0A1	ENTREZGENE
	PIFO_MOUSE	UniProtKB/Swiss-Prot
	Q810M7	ENTREZGENE
	Q9D9W1	ENTREZGENE
UniProt Secondary	D9J0A0	UniProtKB/Swiss-Prot
	D9J0A1	UniProtKB/Swiss-Prot
	Q810M7	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-06-05	Cimap3	ciliary microtubule associated protein 3	Pifo	primary cilia formation	Symbol and/or name updated	27372883	PROVISIONAL
2012-11-27	Pifo	primary cilia formation	1700027A23Rik	RIKEN cDNA 1700027A23 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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