LOC611691 (protein pitchfork-like) - Rat Genome Database

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Gene: LOC611691 (protein pitchfork-like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC611691
Name: protein pitchfork-like
RGD ID: 12261565
Description: ENCODES a protein that exhibits beta-tubulin binding (ortholog); gamma-tubulin binding (ortholog); kinesin binding (ortholog); INVOLVED IN cilium organization (ortholog); embryonic heart tube left/right pattern formation (ortholog); FOUND IN trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,730,086 - 40,750,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha643,508,218 - 43,528,999 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0641,062,527 - 41,082,948 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1640,744,944 - 40,804,021 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,753,322 - 40,774,135 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0641,188,633 - 41,209,440 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Variants

.
Variants in LOC611691
149 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system integumental system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 8
Below cutoff 6 1 2 2 5 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005621785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022420707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022420708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038479724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038479725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038479726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038538896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038538897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038538898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038667731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005621785   ⟹   XP_005621842
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1640,730,086 - 40,750,906 (-)NCBI
Dog10K_Boxer_Tasha643,508,218 - 43,528,999 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022420707   ⟹   XP_022276415
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1640,730,086 - 40,750,906 (-)NCBI
Dog10K_Boxer_Tasha643,508,218 - 43,528,999 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038479724   ⟹   XP_038335652
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1640,744,945 - 40,804,021 (-)NCBI
RefSeq Acc Id: XM_038479725   ⟹   XP_038335653
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1640,744,944 - 40,804,021 (-)NCBI
RefSeq Acc Id: XM_038479726   ⟹   XP_038335654
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1640,744,944 - 40,804,021 (-)NCBI
RefSeq Acc Id: XM_038538896   ⟹   XP_038394824
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0641,188,633 - 41,209,440 (-)NCBI
RefSeq Acc Id: XM_038538897   ⟹   XP_038394825
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0641,188,633 - 41,209,440 (-)NCBI
RefSeq Acc Id: XM_038538898   ⟹   XP_038394826
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0641,188,633 - 41,209,440 (-)NCBI
RefSeq Acc Id: XM_038603025   ⟹   XP_038458953
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0640,753,322 - 40,774,135 (-)NCBI
RefSeq Acc Id: XM_038603026   ⟹   XP_038458954
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0640,753,322 - 40,774,135 (-)NCBI
RefSeq Acc Id: XM_038603027   ⟹   XP_038458955
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0640,753,322 - 40,774,135 (-)NCBI
RefSeq Acc Id: XM_038667729   ⟹   XP_038523657
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0641,062,527 - 41,082,948 (-)NCBI
RefSeq Acc Id: XM_038667730   ⟹   XP_038523658
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0641,062,527 - 41,082,948 (-)NCBI
RefSeq Acc Id: XM_038667731   ⟹   XP_038523659
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0641,062,527 - 41,082,948 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005621842   ⟸   XM_005621785
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RLJ6 (UniProtKB/TrEMBL),   A0A8I3MPS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022276415   ⟸   XM_022420707
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_038335653   ⟸   XM_038479725
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038335654   ⟸   XM_038479726
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038335652   ⟸   XM_038479724
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038458954   ⟸   XM_038603026
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038458955   ⟸   XM_038603027
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038458953   ⟸   XM_038603025
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038523658   ⟸   XM_038667730
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038523659   ⟸   XM_038667731
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038523657   ⟸   XM_038667729
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RLJ6 (UniProtKB/TrEMBL),   A0A8I3MPS9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394825   ⟸   XM_038538897
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038394826   ⟸   XM_038538898
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038394824   ⟸   XM_038538896
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RLJ6 (UniProtKB/TrEMBL),   A0A8I3MPS9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019743 UniProtKB/TrEMBL
  ENSCAFG00030016290 UniProtKB/TrEMBL
  ENSCAFG00845001520 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031397.5 UniProtKB/TrEMBL
  ENSCAFT00000080433.2 UniProtKB/TrEMBL
  ENSCAFT00030030073.1 UniProtKB/TrEMBL
  ENSCAFT00030030121.1 UniProtKB/TrEMBL
  ENSCAFT00845002631 ENTREZGENE
  ENSCAFT00845002631.1 UniProtKB/TrEMBL
  ENSCAFT00845002649.1 UniProtKB/TrEMBL
InterPro Pitchfork UniProtKB/TrEMBL
  SHIPPO-rpt UniProtKB/TrEMBL
KEGG Report cfa:611691 UniProtKB/TrEMBL
NCBI Gene LOC611691 ENTREZGENE
PANTHER PROTEIN PITCHFORK UniProtKB/TrEMBL
  PTHR31508 UniProtKB/TrEMBL
Pfam SHIPPO-rpt UniProtKB/TrEMBL
UniProt A0A8C0NNE5_CANLF UniProtKB/TrEMBL
  A0A8C0RLJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MPS9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MPT6_CANLF UniProtKB/TrEMBL