HTRA1 (HtrA serine peptidase 1) - Rat Genome Database

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Gene: HTRA1 (HtrA serine peptidase 1) Chlorocebus sabaeus
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Symbol: HTRA1
Name: HtrA serine peptidase 1
RGD ID: 18776224
Description: ENCODES a protein that exhibits molecular function activator activity (ortholog); INVOLVED IN chorionic trophoblast cell differentiation (ortholog); dentinogenesis (ortholog); negative regulation of BMP signaling pathway (ortholog); ASSOCIATED WITH 2-Methylbutyryl-CoA Dehydrogenase Deficiency (ortholog); age related macular degeneration (ortholog); age related macular degeneration 7 (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine protease HTRA1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19115,197,543 - 115,250,092 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9115,197,566 - 115,253,919 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604876,496,054 - 76,549,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HTRA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19115,197,543 - 115,250,092 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9115,197,566 - 115,253,919 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604876,496,054 - 76,549,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
HTRA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810122,461,553 - 122,514,907 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10122,458,551 - 122,514,907 (+)EnsemblGRCh38hg38GRCh38
GRCh3710124,221,069 - 124,274,423 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610124,211,047 - 124,264,413 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410124,211,110 - 124,264,413NCBI
Celera10117,953,296 - 118,006,683 (+)NCBICelera
Cytogenetic Map10q26.13NCBI
HuRef10117,851,770 - 117,905,378 (+)NCBIHuRef
CHM1_110124,505,637 - 124,559,026 (+)NCBICHM1_1
T2T-CHM13v2.010123,357,406 - 123,410,753 (+)NCBIT2T-CHM13v2.0
Htra1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397130,537,933 - 130,587,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7130,537,841 - 130,587,390 (+)EnsemblGRCm39 Ensembl
GRCm387130,936,203 - 130,985,658 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7130,936,111 - 130,985,660 (+)EnsemblGRCm38mm10GRCm38
MGSCv377138,079,717 - 138,129,172 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367130,727,377 - 130,776,801 (+)NCBIMGSCv36mm8
Celera7130,747,058 - 130,797,116 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map773.2NCBI
Htra1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,928,069 - 194,977,619 (+)NCBIGRCr8
mRatBN7.21185,497,815 - 185,547,380 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1185,497,735 - 185,547,379 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1193,848,030 - 193,897,573 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01201,026,602 - 201,075,741 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01193,698,377 - 193,747,515 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01201,499,067 - 201,548,508 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1201,499,028 - 201,548,513 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01208,532,013 - 208,581,538 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41190,257,899 - 190,308,325 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11190,407,779 - 190,458,206 (+)NCBI
Celera1183,110,143 - 183,159,496 (+)NCBICelera
Cytogenetic Map1q41NCBI
Htra1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955477761,127 - 808,994 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955477761,127 - 808,396 (+)NCBIChiLan1.0ChiLan1.0
HTRA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28134,316,807 - 134,370,272 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110134,322,279 - 134,375,624 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010119,030,409 - 119,083,682 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110122,437,914 - 122,495,281 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10122,441,098 - 122,494,733 (+)Ensemblpanpan1.1panPan2
HTRA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12832,133,779 - 32,157,835 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2832,132,547 - 32,157,409 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2832,180,049 - 32,232,586 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02832,639,924 - 32,693,737 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2832,640,671 - 32,693,730 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12832,172,101 - 32,225,511 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02832,194,497 - 32,247,262 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02832,398,590 - 32,451,692 (+)NCBIUU_Cfam_GSD_1.0
Htra1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721314,244,028 - 14,290,168 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648611,271,130 - 11,316,739 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648611,271,130 - 11,317,271 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HTRA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14132,041,934 - 132,103,595 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114132,043,044 - 132,103,590 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214143,497,521 - 143,558,513 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Htra1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473724,216,525 - 24,267,827 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473724,217,260 - 24,267,836 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007964297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000002637   ⟹   ENSCSAP00000000937
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl9115,197,566 - 115,253,919 (+)Ensembl
RefSeq Acc Id: XM_007964297   ⟹   XP_007962488
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.19115,197,543 - 115,250,092 (+)NCBI
Vero_WHO_p1.0NW_02366604876,496,054 - 76,549,359 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007962488 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000937.1
RefSeq Acc Id: XP_007962488   ⟸   XM_007964297
- UniProtKB: A0A0D9QX48 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000000937   ⟸   ENSCSAT00000002637


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004604 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002637.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
  2.40.10.120 UniProtKB/TrEMBL
  3.30.60.30 UniProtKB/TrEMBL
  4.10.40.20 UniProtKB/TrEMBL
InterPro Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  IGFBP-like UniProtKB/TrEMBL
  Kazal_dom UniProtKB/TrEMBL
  Kazal_dom_sf UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_6 UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1C UniProtKB/TrEMBL
KEGG Report csab:103216638 UniProtKB/TrEMBL
NCBI Gene HTRA1 ENTREZGENE
PANTHER SERINE PROTEASE FAMILY S1C HTRA-RELATED UniProtKB/TrEMBL
  SERINE PROTEASE HTRA1 UniProtKB/TrEMBL
Pfam IGFBP UniProtKB/TrEMBL
  Kazal_2 UniProtKB/TrEMBL
  PDZ_6 UniProtKB/TrEMBL
  Trypsin_2 UniProtKB/TrEMBL
PRINTS PROTEASES2C UniProtKB/TrEMBL
PROSITE IGFBP_N_2 UniProtKB/TrEMBL
  KAZAL_2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
SMART KAZAL UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SM00121 UniProtKB/TrEMBL
Superfamily-SCOP SSF100895 UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
  SSF50494 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A0D9QX48 ENTREZGENE, UniProtKB/TrEMBL