MAP1LC3B (microtubule associated protein 1 light chain 3 beta) - Rat Genome Database

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Gene: MAP1LC3B (microtubule associated protein 1 light chain 3 beta) Chlorocebus sabaeus
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Symbol: MAP1LC3B
Name: microtubule associated protein 1 light chain 3 beta
RGD ID: 18754318
Description: ENCODES a protein that exhibits ceramide binding (ortholog); microtubule binding (ortholog); phosphatidylethanolamine binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagosome maturation (ortholog); cellular response to starvation (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); Chemical and Drug Induced Liver Injury (ortholog); KBG syndrome (ortholog); FOUND IN autolysosome (ortholog); autophagosome (ortholog); autophagosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: microtubule-associated proteins 1A/1B light chain 3B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1572,762,428 - 72,774,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl572,763,050 - 72,772,770 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660472,921,927 - 2,933,888 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MAP1LC3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1572,762,428 - 72,774,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl572,763,050 - 72,772,770 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660472,921,927 - 2,933,888 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MAP1LC3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381687,392,336 - 87,404,774 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1687,383,953 - 87,404,779 (+)EnsemblGRCh38hg38GRCh38
GRCh371687,425,942 - 87,438,380 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361685,983,320 - 85,995,881 (+)NCBINCBI36Build 36hg18NCBI36
Build 341685,983,450 - 85,995,880NCBI
Celera1671,722,569 - 71,735,146 (+)NCBICelera
Cytogenetic Map16q24.2NCBI
HuRef1673,168,889 - 73,180,793 (+)NCBIHuRef
CHM1_11688,837,611 - 88,850,167 (+)NCBICHM1_1
T2T-CHM13v2.01693,463,228 - 93,475,656 (+)NCBIT2T-CHM13v2.0
Map1lc3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,317,177 - 122,325,499 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8122,317,100 - 122,325,499 (+)EnsemblGRCm39 Ensembl
GRCm388121,590,438 - 121,598,760 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,590,361 - 121,598,760 (+)EnsemblGRCm38mm10GRCm38
MGSCv378124,114,368 - 124,121,947 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368124,476,528 - 124,484,107 (+)NCBIMGSCv36mm8
Celera8125,811,811 - 125,819,390 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.67NCBI
Map1lc3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,571,631 - 66,582,270 (+)NCBIGRCr8
mRatBN7.21949,665,795 - 49,673,655 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,665,791 - 49,677,690 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1956,456,727 - 56,464,411 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01957,140,942 - 57,148,612 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01959,355,262 - 59,362,946 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01953,635,449 - 53,643,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1953,629,779 - 53,646,058 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,373,068 - 64,381,400 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41951,847,187 - 51,854,858 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11951,852,067 - 51,859,738 (+)NCBI
Celera1948,912,797 - 48,920,467 (+)NCBICelera
Cytogenetic Map19q12NCBI
Map1lc3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555411,852,388 - 1,868,194 (+)NCBIChiLan1.0ChiLan1.0
MAP1LC3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21897,140,144 - 97,163,688 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116103,065,985 - 103,080,043 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01668,063,869 - 68,076,772 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11687,393,976 - 87,399,736 (+)NCBIpanpan1.1PanPan1.1panPan2
MAP1LC3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1565,669,553 - 65,683,445 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha565,681,248 - 65,695,108 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0565,891,103 - 65,905,466 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1565,915,961 - 65,929,771 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0565,747,849 - 65,761,805 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0566,161,995 - 66,175,961 (-)NCBIUU_Cfam_GSD_1.0
MAP1LC3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,915,387 - 1,941,069 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.161,919,879 - 1,941,069 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.262,007,809 - 2,029,003 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Map1lc3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247463,084,392 - 3,094,250 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247463,084,418 - 3,094,250 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007994295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000001163   ⟹   ENSCSAP00000014908
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl572,763,050 - 72,772,770 (+)Ensembl
RefSeq Acc Id: XM_007994295   ⟹   XP_007992486
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1572,762,428 - 72,774,204 (+)NCBI
Vero_WHO_p1.0NW_0236660472,921,927 - 2,933,888 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007992486 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014908
  ENSCSAP00000014908.1
RefSeq Acc Id: XP_007992486   ⟸   XM_007994295
- UniProtKB: A0A0D9S219 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000014908   ⟸   ENSCSAT00000001163


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003134 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001163.1 UniProtKB/TrEMBL
InterPro Atg8-like UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
KEGG Report csab:103233426 UniProtKB/TrEMBL
NCBI Gene MAP1LC3B ENTREZGENE
PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3 BETA 2-RELATED UniProtKB/TrEMBL
  PTHR10969 UniProtKB/TrEMBL
Pfam Atg8 UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A0D9S219 ENTREZGENE, UniProtKB/TrEMBL