Map1lc3b (microtubule-associated protein 1 light chain 3 beta) - Rat Genome Database

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Gene: Map1lc3b (microtubule-associated protein 1 light chain 3 beta) Mus musculus
Analyze
Symbol: Map1lc3b
Name: microtubule-associated protein 1 light chain 3 beta
RGD ID: 1551009
MGI Page MGI
Description: Predicted to enable several functions, including ceramide binding activity; microtubule binding activity; and ubiquitin protein ligase binding activity. Involved in autophagy. Acts upstream of or within positive regulation of mucus secretion. Located in autolysosome; axoneme; and membrane. Is expressed in several structures, including central nervous system; heart; limb; peripheral nervous system ganglion; and sensory organ. Orthologous to several human genes including MAP1LC3B2 (microtubule associated protein 1 light chain 3 beta 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1010001C15Rik; Atg; Atg8; autophagy-related protein LC3 B; autophagy-related ubiquitin-like modifier LC3 B; LC3; LC3b; Map1; MAP1 light chain 3-like protein 2; MAP1A/MAP1B; MAP1A/MAP1B LC3 B; MAP1A/MAP1B light chain 3 B; Map1lc3; MGC118046; microtubule-associated proteins 1A/1B light chain 3B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm11949   Gm12727   Gm5359   Gm5612   Gm6048   Gm6053   Gm6054   Gm6055  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,317,177 - 122,325,499 (+)NCBIGRCm39mm39
GRCm39 Ensembl8122,317,100 - 122,325,499 (+)Ensembl
GRCm388121,590,438 - 121,598,760 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,590,361 - 121,598,760 (+)EnsemblGRCm38mm10GRCm38
MGSCv378124,114,368 - 124,121,947 (+)NCBIGRCm37mm9NCBIm37
MGSCv368124,476,528 - 124,484,107 (+)NCBImm8
Celera8125,811,811 - 125,819,390 (+)NCBICelera
Cytogenetic Map8E1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-Tetrandrine  (ISO)
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
1-nitropyrene  (EXP,ISO)
17alpha-ethynylestradiol  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,2-(2-Chlorophenyl-4'-chlorophenyl)-1,1-dichloroethene  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-D  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-deoxy-D-glucose  (ISO)
2-hydroxyethyl methacrylate  (ISO)
3,3',5-triiodo-L-thyronine  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-[3-(tert-butylsulfanyl)-1-(4-chlorobenzyl)-5-(propan-2-yl)-1H-indol-2-yl]-2,2-dimethylpropanoic acid  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-methyladenine  (EXP,ISO)
3-Nitrofluoranthene  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (EXP,ISO)
4-methoxy-TEMPO  (ISO)
4-phenylbutyric acid  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxamide  (ISO)
7-ketocholesterol  (EXP)
abamectin  (ISO)
ABT-737  (ISO)
acadesine  (ISO)
acetaldehyde  (EXP)
acetamide  (ISO)
acrylamide  (ISO)
actinomycin D  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
aldrin  (EXP)
alginic acid  (EXP)
all-trans-retinoic acid  (ISO)
aloxistatin  (EXP,ISO)
alpha,alpha-trehalose  (EXP)
aluminium atom  (EXP)
aluminium(0)  (EXP)
amiodarone  (ISO)
ammonium chloride  (EXP,ISO)
amphotericin B  (EXP)
antimycin A  (ISO)
apigenin  (ISO)
apocynin  (ISO)
aristolochic acid  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP,ISO)
artesunate  (ISO)
atazanavir sulfate  (ISO)
atorvastatin calcium  (ISO)
atrazine  (EXP)
auramine O  (ISO)
AZD4547  (ISO)
bafilomycin A1  (EXP,ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
betulinic acid  (ISO)
bisphenol A  (EXP,ISO)
bleomycin A2  (EXP)
bortezomib  (ISO)
brefeldin A  (ISO)
buspirone  (ISO)
butanal  (ISO)
C60 fullerene  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP,ISO)
calcidiol  (ISO)
calix[6]arene  (ISO)
Calpeptin  (ISO)
carbon disulfide  (EXP)
carbon nanotube  (EXP,ISO)
carglumic acid  (EXP)
celecoxib  (ISO)
CGP 52608  (ISO)
CGS-21680  (ISO)
chenodeoxycholic acid  (EXP,ISO)
chloropicrin  (ISO)
chloroquine  (EXP,ISO)
chlorpyrifos  (ISO)
cholesterol  (EXP,ISO)
cholic acid  (EXP)
chromium(6+)  (ISO)
chrysin  (ISO)
ciguatoxin CTX1B  (EXP)
cisplatin  (EXP,ISO)
Citreoviridin  (EXP,ISO)
clobetasol  (EXP)
clofibrate  (EXP,ISO)
cobalt dichloride  (ISO)
colistin  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) chloride  (EXP,ISO)
copper(II) sulfate  (EXP,ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
Cryptotanshinone  (ISO)
curcumin  (ISO)
Curcumol  (ISO)
cyanamide  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
D-mannopyranose  (ISO)
dapagliflozin  (ISO)
DDE  (EXP)
deguelin  (ISO)
Dehydroeburicoic acid  (ISO)
deoxycholic acid  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (ISO)
dexmedetomidine  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (EXP,ISO)
dibenzofuran  (ISO)
dibutyl phthalate  (EXP,ISO)
diosgenin  (ISO)
dioxygen  (EXP,ISO)
diquat  (EXP)
disodium selenite  (EXP,ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
entinostat  (ISO)
enzalutamide  (ISO)
erastin  (ISO)
erlotinib hydrochloride  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
everolimus  (ISO)
ferric ammonium citrate  (ISO)
ferric oxide  (EXP)
ferrostatin-1  (ISO)
finasteride  (ISO)
flavokawain B  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
fomepizole  (EXP)
formaldehyde  (ISO)
fructose  (ISO)
gamma-hexachlorocyclohexane  (ISO)
gingerol  (ISO)
ginsenoside Rg2  (ISO)
glafenine  (ISO)
glucose  (ISO)
glutathione  (ISO)
glycerol 2-phosphate  (ISO)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
glycyrrhizinic acid  (ISO)
hesperidin  (ISO)
hexadecanoic acid  (EXP,ISO)
hyaluronic acid  (ISO)
hydrogen peroxide  (EXP,ISO)
indoxyl sulfate  (EXP)
inositol  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
ivermectin  (ISO)
juglone  (ISO)
kainic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
L-leucine  (EXP)
L-serine  (ISO)
lactulose  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
levofloxacin  (ISO)
lipopolysaccharide  (ISO)
luteolin  (ISO)
LY294002  (ISO)
melatonin  (EXP)
melibiose  (EXP)
menadione  (ISO)
metformin  (ISO)
methamphetamine  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (EXP,ISO)
methylphenidate  (EXP)
metyrapone  (ISO)
miconazole  (ISO)
myriocin  (ISO)
N-(1,3-benzodioxol-5-ylmethyl)-2,6-dichlorobenzamide  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-acylsphinganine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
NADP zwitterion  (ISO)
NADP(+)  (ISO)
Naftopidil  (ISO)
nefazodone  (ISO)
nelfinavir  (ISO)
niclosamide  (ISO)
nicotinamide  (ISO)
nimesulide  (ISO)
Nivalenol  (EXP)
Nonylphenol  (ISO)
obeticholic acid  (EXP)
olaparib  (ISO)
oleanolic acid  (EXP,ISO)
oleic acid  (ISO)
oxidopamine  (ISO)
paclitaxel  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
PD 0325901  (ISO)
Pentoxifylline  (ISO)
pepstatin A  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
perfluoroundecanoic acid  (ISO)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phosphatidylethanolamine  (ISO)
pirinixic acid  (EXP)
platycodin D  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
procyanidin B2  (EXP)
pterostilbene  (EXP,ISO)
puerarin  (ISO)
quercetin  (ISO)
quetiapine fumarate  (EXP)
radon atom  (EXP)
radon(0)  (EXP)
resveratrol  (EXP,ISO)
rifampicin  (ISO)
rimonabant  (EXP)
rotenone  (EXP,ISO)
roxadustat  (ISO)
ruthenium red  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
serpentine asbestos  (ISO)
sevoflurane  (EXP,ISO)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
simvastatin  (EXP,ISO)
sirolimus  (EXP,ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP,ISO)
Soman  (ISO)
spironolactone  (ISO)
sulforaphane  (ISO)
sulfur dioxide  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP,ISO)
taurine  (EXP,ISO)
taurocholic acid  (EXP)
tebufenpyrad  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thalidomide  (ISO)
thapsigargin  (ISO)
thiamine(1+) chloride  (EXP,ISO)
thifluzamide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
toosendanin  (ISO)
trametinib  (ISO)
trichostatin A  (EXP,ISO)
trifloxystrobin  (ISO)
trimethyltin  (ISO)
trovafloxacin  (ISO)
tunicamycin  (EXP,ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
venlafaxine hydrochloride  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vismodegib  (ISO)
vorinostat  (ISO)
wortmannin  (EXP)
zearalenone  (EXP,ISO)
zinc atom  (ISO)
zinc oxide  (EXP,ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Network organization of the human autophagy system. Behrends C, etal., Nature. 2010 Jul 1;466(7302):68-76. Epub 2010 Jun 20.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. LC3 conjugation system in mammalian autophagy. Tanida I, etal., Int J Biochem Cell Biol. 2004 Dec;36(12):2503-18.
8. MTORC1 coordinates the autophagy and apoptosis signaling in articular chondrocytes in osteoarthritic temporomandibular joint. Yang H, etal., Autophagy. 2020 Feb;16(2):271-288. doi: 10.1080/15548627.2019.1606647. Epub 2019 Apr 21.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11085878   PMID:11890701   PMID:12088839   PMID:12477932   PMID:12890687   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:17077144   PMID:17589504   PMID:18069693   PMID:18097414   PMID:18768753   PMID:19176312   PMID:19915056   PMID:20551175   PMID:20577052  
PMID:20889906   PMID:20956295   PMID:21151103   PMID:21185285   PMID:21383079   PMID:21471385   PMID:21677750   PMID:21681844   PMID:21873635   PMID:21957238   PMID:22055190   PMID:22055344  
PMID:22095627   PMID:22138575   PMID:22371349   PMID:22510200   PMID:22783020   PMID:22863802   PMID:22904094   PMID:22968077   PMID:23052835   PMID:23333919   PMID:23431188   PMID:23542691  
PMID:23629966   PMID:24089209   PMID:24095928   PMID:24184056   PMID:24185898   PMID:24200693   PMID:24566975   PMID:24591579   PMID:24598388   PMID:24747438   PMID:24865278   PMID:24879152  
PMID:24909277   PMID:25198012   PMID:25227738   PMID:25301234   PMID:25348719   PMID:25421500   PMID:25669150   PMID:25816775   PMID:25915474   PMID:26235979   PMID:26284655   PMID:26383973  
PMID:26524528   PMID:26682926   PMID:26719147   PMID:26816051   PMID:26905199   PMID:26909551   PMID:26965188   PMID:27036871   PMID:27180121   PMID:27246713   PMID:27265145   PMID:27383629  
PMID:27458135   PMID:27636016   PMID:27798115   PMID:28291748   PMID:28386022   PMID:28598240   PMID:28604719   PMID:28786745   PMID:28916785   PMID:28928467   PMID:29088262   PMID:29328502  
PMID:29329412   PMID:29372668   PMID:29721994   PMID:29775594   PMID:29874522   PMID:29937374   PMID:30158642   PMID:30202015   PMID:30349463   PMID:30428088   PMID:30633346   PMID:30704899  
PMID:30818059   PMID:30941888   PMID:30985297   PMID:31059511   PMID:31116580   PMID:31142229   PMID:31162135   PMID:31223056   PMID:31286822   PMID:31431059   PMID:31577510   PMID:32057231  
PMID:32325033   PMID:32372061   PMID:32376415   PMID:32553155   PMID:32744119   PMID:32866472   PMID:32876528   PMID:32913122   PMID:33201170   PMID:33459130   PMID:33459133   PMID:33459136  
PMID:33529466   PMID:33966596   PMID:34108486   PMID:34706731   PMID:35394837  


Genomics

Comparative Map Data
Map1lc3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,317,177 - 122,325,499 (+)NCBIGRCm39mm39
GRCm39 Ensembl8122,317,100 - 122,325,499 (+)Ensembl
GRCm388121,590,438 - 121,598,760 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,590,361 - 121,598,760 (+)EnsemblGRCm38mm10GRCm38
MGSCv378124,114,368 - 124,121,947 (+)NCBIGRCm37mm9NCBIm37
MGSCv368124,476,528 - 124,484,107 (+)NCBImm8
Celera8125,811,811 - 125,819,390 (+)NCBICelera
Cytogenetic Map8E1NCBI
MAP1LC3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381687,392,336 - 87,404,774 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1687,383,953 - 87,404,779 (+)EnsemblGRCh38hg38GRCh38
GRCh371687,425,942 - 87,438,380 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361685,983,320 - 85,995,881 (+)NCBINCBI36hg18NCBI36
Build 341685,983,450 - 85,995,880NCBI
Celera1671,722,569 - 71,735,146 (+)NCBI
Cytogenetic Map16q24.2NCBI
HuRef1673,168,889 - 73,180,793 (+)NCBIHuRef
CHM1_11688,837,611 - 88,850,167 (+)NCBICHM1_1
T2T-CHM13v2.01693,463,228 - 93,475,656 (+)NCBI
Map1lc3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21949,665,795 - 49,673,655 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1949,665,791 - 49,677,690 (+)Ensembl
Rnor_6.01953,635,449 - 53,643,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1953,629,779 - 53,646,058 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,373,068 - 64,381,400 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41951,847,187 - 51,854,858 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11951,852,067 - 51,859,738 (+)NCBI
Celera1948,912,797 - 48,920,467 (+)NCBICelera
Cytogenetic Map19q12NCBI
Map1lc3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555411,852,388 - 1,868,194 (+)NCBIChiLan1.0ChiLan1.0
MAP1LC3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11687,393,976 - 87,399,736 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01668,063,869 - 68,076,772 (+)NCBIMhudiblu_PPA_v0panPan3
MAP1LC3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1565,669,553 - 65,683,445 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha565,681,248 - 65,695,108 (-)NCBI
ROS_Cfam_1.0565,891,103 - 65,905,466 (-)NCBI
UMICH_Zoey_3.1565,915,961 - 65,929,771 (-)NCBI
UNSW_CanFamBas_1.0565,747,849 - 65,761,805 (-)NCBI
UU_Cfam_GSD_1.0566,161,995 - 66,175,961 (-)NCBI
MAP1LC3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,915,387 - 1,941,069 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.161,919,879 - 1,941,069 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.262,007,809 - 2,029,003 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAP1LC3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1572,762,428 - 72,774,204 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl572,763,050 - 72,772,770 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660472,921,927 - 2,933,888 (-)NCBIVero_WHO_p1.0
Map1lc3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247463,084,392 - 3,094,250 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247463,084,418 - 3,094,250 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
Map1lc3b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv378124,121,378 - 124,121,852UniSTSGRCm37
Celera8125,818,821 - 125,819,295UniSTS
Cytogenetic Map8E1UniSTS
cM Map8 UniSTS
RH126047  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388121,597,844 - 121,598,043UniSTSGRCm38
MGSCv378124,121,744 - 124,121,943UniSTSGRCm37
Celera8125,819,187 - 125,819,386UniSTS
Cytogenetic Map8E1UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS
Map1lc3b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388121,597,478 - 121,597,952UniSTSGRCm38
MGSCv378124,121,378 - 124,121,852UniSTSGRCm37
Celera8125,818,821 - 125,819,295UniSTS
Cytogenetic Map8E1UniSTS
cM Map8 UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
4141546Mrdq3_mmodifier of retinal degeneration QTL 3 (mouse)Not determined114439420126055880Mouse
26884375Skwq2_mskull length QTL 2, 5 week (mouse)8120726739130027694Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir204mmu-miR-204-5pOncomiRDBexternal_infoNANA22516261

Predicted Target Of
Summary Value
Count of predictions:1236
Count of miRNA genes:607
Interacting mature miRNAs:716
Transcripts:ENSMUST00000034270, ENSMUST00000180548, ENSMUST00000181521, ENSMUST00000181826, ENSMUST00000181948
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001364358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC103359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC182458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF255953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC110308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000034270   ⟹   ENSMUSP00000034270
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8122,317,100 - 122,325,499 (+)Ensembl
GRCm38.p6 Ensembl8121,590,361 - 121,598,760 (+)Ensembl
RefSeq Acc Id: ENSMUST00000180548
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8122,317,220 - 122,324,785 (+)Ensembl
GRCm38.p6 Ensembl8121,590,481 - 121,598,046 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181521   ⟹   ENSMUSP00000137996
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8122,317,451 - 122,323,734 (+)Ensembl
GRCm38.p6 Ensembl8121,590,712 - 121,596,995 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181826   ⟹   ENSMUSP00000148359
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8122,317,216 - 122,319,848 (+)Ensembl
GRCm38.p6 Ensembl8121,590,477 - 121,593,109 (+)Ensembl
RefSeq Acc Id: ENSMUST00000181948   ⟹   ENSMUSP00000137754
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8122,317,223 - 122,323,751 (+)Ensembl
GRCm38.p6 Ensembl8121,590,484 - 121,597,012 (+)Ensembl
RefSeq Acc Id: NM_001364358   ⟹   NP_001351287
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398122,317,177 - 122,325,499 (+)NCBI
GRCm388121,590,438 - 121,598,760 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026160   ⟹   NP_080436
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398122,317,177 - 122,325,499 (+)NCBI
GRCm388121,590,438 - 121,598,760 (+)NCBI
MGSCv378124,114,368 - 124,121,947 (+)RGD
Celera8125,811,811 - 125,819,390 (+)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_080436   ⟸   NM_026160
- Peptide Label: isoform 1
- UniProtKB: Q9D1R0 (UniProtKB/Swiss-Prot),   Q9CQV6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001351287   ⟸   NM_001364358
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000034270   ⟸   ENSMUST00000034270
RefSeq Acc Id: ENSMUSP00000148359   ⟸   ENSMUST00000181826
RefSeq Acc Id: ENSMUSP00000137754   ⟸   ENSMUST00000181948
RefSeq Acc Id: ENSMUSP00000137996   ⟸   ENSMUST00000181521

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CQV6-F1-model_v2 AlphaFold Q9CQV6 1-125 view protein structure

Promoters
RGD ID:8668489
Promoter ID:EPDNEW_M12275
Type:initiation region
Name:Map1lc3b_1
Description:Mus musculus microtubule-associated protein 1 light chain 3 beta, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388121,590,466 - 121,590,526EPDNEW
RGD ID:6843427
Promoter ID:MM_KWN:55967
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_026160
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368124,114,014 - 124,114,514 (+)MPROMDB
RGD ID:6848320
Promoter ID:MM_ACW:49136
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Kidney
Transcripts:MAP1LC3B.HSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368124,119,741 - 124,120,241 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914693 AgrOrtholog
Ensembl Genes ENSMUSG00000031812 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034270 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000137754 ENTREZGENE
  ENSMUSP00000137754.2 UniProtKB/TrEMBL
  ENSMUSP00000137996.2 UniProtKB/TrEMBL
  ENSMUSP00000148359.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034270 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000181521.2 UniProtKB/TrEMBL
  ENSMUST00000181826.2 UniProtKB/TrEMBL
  ENSMUST00000181948 ENTREZGENE
  ENSMUST00000181948.2 UniProtKB/TrEMBL
InterPro Atg8-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67443 UniProtKB/Swiss-Prot
MGD MGI:1914693 ENTREZGENE
NCBI Gene 67443 ENTREZGENE
PANTHER PTHR10969 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Atg8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Map1lc3b PhenoGen
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1D5RLG5_MOUSE UniProtKB/TrEMBL
  M0QWC2_MOUSE UniProtKB/TrEMBL
  M0QWT8_MOUSE UniProtKB/TrEMBL
  MLP3B_MOUSE UniProtKB/Swiss-Prot
  Q2TBF9_MOUSE UniProtKB/TrEMBL
  Q8K161_MOUSE UniProtKB/TrEMBL
  Q9CQV6 ENTREZGENE
  Q9D1R0 ENTREZGENE
UniProt Secondary Q3U9W5 UniProtKB/Swiss-Prot
  Q9D1R0 UniProtKB/Swiss-Prot