IQCF1 (IQ motif containing F1) - Rat Genome Database

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Gene: IQCF1 (IQ motif containing F1) Chlorocebus sabaeus
Analyze
Symbol: IQCF1
Name: IQ motif containing F1
RGD ID: 18749221
Description: ENCODES a protein that exhibits calmodulin binding (inferred); INVOLVED IN positive regulation of acrosome reaction (inferred); positive regulation of flagellated sperm motility involved in capacitation (inferred); FOUND IN acrosomal vesicle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: IQ domain-containing protein F1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,264,183 - 13,271,409 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,264,197 - 13,270,856 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041153,634,100 - 153,670,754 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
IQCF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,264,183 - 13,271,409 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,264,197 - 13,270,856 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041153,634,100 - 153,670,754 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
IQCF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,894,876 - 51,903,353 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,894,876 - 51,903,353 (-)EnsemblGRCh38hg38GRCh38
GRCh37351,928,892 - 51,937,369 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,903,932 - 51,912,391 (-)NCBINCBI36Build 36hg18NCBI36
Build 34351,903,932 - 51,912,391NCBI
Celera351,907,728 - 51,916,218 (-)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef351,992,583 - 52,001,072 (-)NCBIHuRef
CHM1_1351,881,593 - 51,890,082 (-)NCBICHM1_1
T2T-CHM13v2.0351,927,807 - 51,936,279 (-)NCBIT2T-CHM13v2.0
Iqcf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,377,166 - 106,379,449 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,377,166 - 106,379,453 (+)EnsemblGRCm39 Ensembl
GRCm389106,499,967 - 106,502,250 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,499,967 - 106,502,254 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,402,298 - 106,404,581 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369106,358,083 - 106,360,352 (+)NCBIMGSCv36mm8
Celera9106,118,274 - 106,120,561 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.65NCBI
Iqcf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88116,008,081 - 116,011,950 (+)NCBIGRCr8
mRatBN7.28107,129,462 - 107,133,242 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,130,704 - 107,133,249 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8112,753,894 - 112,756,362 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08110,953,070 - 110,955,538 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08108,795,852 - 108,798,320 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,191,919 - 115,195,599 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,193,146 - 115,195,668 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,556,972 - 114,559,887 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48111,635,585 - 111,638,080 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8106,442,644 - 106,445,131 (+)NCBICelera
Cytogenetic Map8q32NCBI
LOC102021703
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555323,559,990 - 3,561,238 (-)NCBIChiLan1.0ChiLan1.0
IQCF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2251,890,290 - 51,927,780 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1351,882,930 - 51,905,753 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0351,836,683 - 51,847,503 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,068,288 - 53,076,768 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,068,302 - 53,076,490 (-)Ensemblpanpan1.1panPan2
IQCF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,797,253 - 37,799,110 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,797,325 - 37,799,110 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,777,288 - 37,779,145 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02038,146,404 - 38,148,261 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2038,146,476 - 38,148,261 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,510,001 - 37,511,858 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,918,928 - 37,920,765 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,203,853 - 38,205,711 (+)NCBIUU_Cfam_GSD_1.0
LOC101959243
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,502,800 - 66,504,791 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365293,263,311 - 3,266,991 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IQCF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,057,164 - 34,060,951 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,057,694 - 34,059,552 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,254,232 - 37,255,986 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC101714413
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247305,706,146 - 5,706,571 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
65 28 18 26 26 57 20

Sequence


Ensembl Acc Id: ENSCSAT00000012041   ⟹   ENSCSAP00000010089
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2213,264,248 - 13,265,745 (-)Ensembl
Ensembl Acc Id: ENSCSAT00000012042   ⟹   ENSCSAP00000010092
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2213,264,197 - 13,270,856 (-)Ensembl
RefSeq Acc Id: XM_038002628   ⟹   XP_037858556
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041153,634,100 - 153,670,754 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037858556 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010089.1
  ENSCSAP00000010092.1
Ensembl Acc Id: ENSCSAP00000010089   ⟸   ENSCSAT00000012041
Ensembl Acc Id: ENSCSAP00000010092   ⟸   ENSCSAT00000012042
RefSeq Acc Id: XP_037858556   ⟸   XM_038002628


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013951 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012041.1 UniProtKB/TrEMBL
  ENSCSAT00000012042.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.190 UniProtKB/TrEMBL
InterPro IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  IQCF UniProtKB/TrEMBL
NCBI Gene IQCF1 ENTREZGENE
PANTHER IQ DOMAIN-CONTAINING PROTEIN F1 UniProtKB/TrEMBL
  PTHR21633 UniProtKB/TrEMBL
Pfam PF00612 UniProtKB/TrEMBL
PROSITE PS50096 UniProtKB/TrEMBL
SMART SM00015 UniProtKB/TrEMBL
UniProt A0A0D9RNA0_CHLSB UniProtKB/TrEMBL
  A0A0D9RNA3_CHLSB UniProtKB/TrEMBL