IQCF1 (IQ motif containing F1) - Rat Genome Database

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Gene: IQCF1 (IQ motif containing F1) Pan paniscus
Analyze
Symbol: IQCF1
Name: IQ motif containing F1
RGD ID: 11962650
Description: ENCODES a protein that exhibits calmodulin binding (inferred); INVOLVED IN positive regulation of acrosome reaction (ortholog); positive regulation of flagellated sperm motility involved in capacitation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN acrosomal vesicle (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: IQ domain-containing protein F1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2251,890,290 - 51,927,780 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1351,882,930 - 51,905,753 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0351,836,683 - 51,847,503 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,068,288 - 53,076,768 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,068,302 - 53,076,490 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
IQCF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2251,890,290 - 51,927,780 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1351,882,930 - 51,905,753 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0351,836,683 - 51,847,503 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,068,288 - 53,076,768 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,068,302 - 53,076,490 (-)Ensemblpanpan1.1panPan2
IQCF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,894,876 - 51,903,353 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,894,876 - 51,903,353 (-)EnsemblGRCh38hg38GRCh38
GRCh37351,928,892 - 51,937,369 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,903,932 - 51,912,391 (-)NCBINCBI36Build 36hg18NCBI36
Build 34351,903,932 - 51,912,391NCBI
Celera351,907,728 - 51,916,218 (-)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef351,992,583 - 52,001,072 (-)NCBIHuRef
CHM1_1351,881,593 - 51,890,082 (-)NCBICHM1_1
T2T-CHM13v2.0351,927,807 - 51,936,279 (-)NCBIT2T-CHM13v2.0
Iqcf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,377,166 - 106,379,449 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,377,166 - 106,379,453 (+)EnsemblGRCm39 Ensembl
GRCm389106,499,967 - 106,502,250 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,499,967 - 106,502,254 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,402,298 - 106,404,581 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369106,358,083 - 106,360,352 (+)NCBIMGSCv36mm8
Celera9106,118,274 - 106,120,561 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.65NCBI
Iqcf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88116,008,081 - 116,011,950 (+)NCBIGRCr8
mRatBN7.28107,129,462 - 107,133,242 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,130,704 - 107,133,249 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8112,753,894 - 112,756,362 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08110,953,070 - 110,955,538 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08108,795,852 - 108,798,320 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,191,919 - 115,195,599 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,193,146 - 115,195,668 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,556,972 - 114,559,887 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48111,635,585 - 111,638,080 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8106,442,644 - 106,445,131 (+)NCBICelera
Cytogenetic Map8q32NCBI
LOC102021703
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555323,559,990 - 3,561,238 (-)NCBIChiLan1.0ChiLan1.0
IQCF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,797,253 - 37,799,110 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,797,325 - 37,799,110 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,777,288 - 37,779,145 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02038,146,404 - 38,148,261 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2038,146,476 - 38,148,261 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,510,001 - 37,511,858 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,918,928 - 37,920,765 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,203,853 - 38,205,711 (+)NCBIUU_Cfam_GSD_1.0
LOC101959243
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,502,800 - 66,504,791 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365293,263,311 - 3,266,991 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IQCF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,057,164 - 34,060,951 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,057,694 - 34,059,552 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,254,232 - 37,255,986 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IQCF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,264,183 - 13,271,409 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,264,197 - 13,270,856 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041153,634,100 - 153,670,754 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101714413
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247305,706,146 - 5,706,571 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000047785   ⟹   ENSPPAP00000024959
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl353,068,302 - 53,076,490 (-)Ensembl
RefSeq Acc Id: XM_003818783   ⟹   XP_003818831
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2251,890,290 - 51,927,780 (-)NCBI
NHGRI_mPanPan1351,882,930 - 51,905,753 (-)NCBI
Mhudiblu_PPA_v0351,838,775 - 51,847,503 (-)NCBI
PanPan1.1353,068,288 - 53,076,768 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063602396   ⟹   XP_063458466
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2251,890,290 - 51,927,780 (-)NCBI
RefSeq Acc Id: XM_063602397   ⟹   XP_063458467
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2251,890,290 - 51,899,324 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003818831 (Get FASTA)   NCBI Sequence Viewer  
  XP_063458466 (Get FASTA)   NCBI Sequence Viewer  
  XP_063458467 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024959
  ENSPPAP00000024959.1
Reference Protein Sequences
RefSeq Acc Id: XP_003818831   ⟸   XM_003818783
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BCZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000024959   ⟸   ENSPPAT00000047785
RefSeq Acc Id: XP_063458466   ⟸   XM_063602396
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063458467   ⟸   XM_063602397
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035624 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047785.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.190 UniProtKB/TrEMBL
InterPro IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  IQCF UniProtKB/TrEMBL
NCBI Gene IQCF1 ENTREZGENE
PANTHER IQ DOMAIN-CONTAINING PROTEIN F1 UniProtKB/TrEMBL
  PTHR21633 UniProtKB/TrEMBL
Pfam PF00612 UniProtKB/TrEMBL
PROSITE PS50096 UniProtKB/TrEMBL
SMART SM00015 UniProtKB/TrEMBL
UniProt A0A2R9BCZ2 ENTREZGENE, UniProtKB/TrEMBL