Iqcf1 (IQ motif containing F1) - Rat Genome Database

Name: Iqcf1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Iqcf1 (IQ motif containing F1) Mus musculus

Analyze

Symbol:

Iqcf1

Name:

IQ motif containing F1

RGD ID:

1558133

MGI Page

MGI

Description:

Exhibits calmodulin binding activity. Involved in positive regulation of acrosome reaction and positive regulation of flagellated sperm motility involved in capacitation. Localizes to acrosomal vesicle. Orthologous to human IQCF1 (IQ motif containing F1); INTERACTS WITH 1,2-dimethylhydrazine; folic acid; pirinixic acid.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

1700055J15Rik; IQ domain-containing protein F1

RGD Orthologs

Human

Rat

Bonobo

Dog

Pig

Green Monkey

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	IQCF1 (IQ motif containing F1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Iqcf1 (IQ motif containing F1)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Pan paniscus (bonobo/pygmy chimpanzee):	IQCF1 (IQ motif containing F1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	IQCF1 (IQ motif containing F1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LOC100620649 (IQ domain-containing protein F1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	IQCF1 (IQ motif containing F1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	IQCF5 (IQ motif containing F5)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	IQCF1 (IQ motif containing F1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Rattus norvegicus (Norway rat):	Iqcf1 (IQ motif containing F1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	106,377,166 - 106,379,449 (+)	NCBI	GRCm39		mm39
GRCm38	9	106,499,967 - 106,502,250 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	106,499,967 - 106,502,254 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	106,402,298 - 106,404,581 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	106,358,083 - 106,360,352 (+)	NCBI			mm8
Celera	9	106,118,274 - 106,120,561 (+)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

3-chloropropane-1,2-diol (ISO)

acetamiprid (ISO)

bisphenol A (ISO)

folic acid (EXP)

lead nitrate (ISO)

methamphetamine (ISO)

methotrexate (ISO)

Monobutylphthalate (ISO)

pirinixic acid (EXP)

potassium dichromate (EXP)

quercetin (ISO)

SCH 23390 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of acrosome reaction (IBA,IMP)

positive regulation of flagellated sperm motility involved in capacitation (IMP)

Cellular Component

acrosomal vesicle (IBA,IDA,ISO)

cytoplasmic vesicle (IEA)

Molecular Function

calmodulin binding (IBA,IPI)

protein binding (IPI)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

asthenozoospermia (IAGP)

impaired acrosome reaction (IAGP)

reduced male fertility (IAGP)

References

References - curated


1.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	RGD automated import pipeline
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:12477932	PMID:15489334	PMID:16141072	PMID:16141073	PMID:21267068	PMID:21873635	PMID:25380116

Genomics

Comparative Map Data

Iqcf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	106,377,166 - 106,379,449 (+)	NCBI	GRCm39		mm39
GRCm38	9	106,499,967 - 106,502,250 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	106,499,967 - 106,502,254 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	106,402,298 - 106,404,581 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	106,358,083 - 106,360,352 (+)	NCBI			mm8
Celera	9	106,118,274 - 106,120,561 (+)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI

IQCF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	51,894,876 - 51,903,353 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	51,894,876 - 51,903,353 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	51,928,892 - 51,937,386 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	51,903,932 - 51,912,391 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	3	51,903,932 - 51,912,391	NCBI
Celera	3	51,907,728 - 51,916,218 (-)	NCBI
Cytogenetic Map	3	p21.2	NCBI
HuRef	3	51,992,583 - 52,001,072 (-)	NCBI		HuRef
CHM1_1	3	51,881,593 - 51,890,082 (-)	NCBI		CHM1_1

Iqcf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	8	115,191,919 - 115,195,599 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	115,193,146 - 115,195,668 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	114,556,972 - 114,559,887 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	111,635,585 - 111,638,080 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	8	106,442,644 - 106,445,131 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

IQCF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	53,068,288 - 53,076,768 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	53,068,302 - 53,076,490 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	51,836,683 - 51,847,503 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

IQCF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	37,797,325 - 37,799,110 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	37,797,253 - 37,799,110 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

LOC100620649
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	34,057,694 - 34,059,385 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	34,057,694 - 34,059,552 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	37,254,232 - 37,255,986 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IQCF1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	13,264,183 - 13,271,409 (-)	NCBI
ChlSab1.1 Ensembl	22	13,264,197 - 13,270,856 (-)	Ensembl

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13207569	Tcq13_m	total cholesterol QTL 13 (mouse)					9	59990000	109260000	Mouse
4141833	W10q13_m	weight 10 weeks QTL 13 (mouse)			Not determined			63332429	120362868	Mouse
4141545	Tailaq2_m	tail length adjusted QTL 2 (mouse)			Not determined			63332429	120362868	Mouse
1357635	Splq4_m	spleen weight QTL 4 (mouse)			Not determined		9	63332429	120362868	Mouse
1301573	Etohcta8_m	ethanol conditioned taste aversion 8 (mouse)			Not determined		9	72977005	106977152	Mouse
10054068	El8_m	epilepsy 8 (mouse)			Not determined		9	72977005	106977152	Mouse
1301725	Lifespan1_m	life span 1 (mouse)			Not determined		9	74368177	108368325	Mouse
1302065	El1_m	epilepsy 1 (mouse)			Not determined		9	75775364	114474379	Mouse
10054492	El7_m	epilepsy 7 (mouse)			Not determined		9	75775364	114474379	Mouse
1301407	Rapop2_m	radiation-induced apoptosis 2 (mouse)			Not determined		9	76535936	110536130	Mouse
1301192	Skts6_m	skin tumor susceptibility 6 (mouse)			Not determined		9	78640645	112640755	Mouse
10401247	Bglu14_m	blood glucose level 14 (mouse)			Not determined		9	79397810	113397888	Mouse
1301732	Char1_m	P. chabaudi malaria resistance QTL 1 (mouse)			Not determined		9	81798268	115798392	Mouse
1300884	Sluc11_m	susceptibility to lung cancer 11 (mouse)			Not determined		9	82910333	116910428	Mouse
1357461	Idd2_m	insulin dependent diabetes susceptibility 2 (mouse)			Not determined		9	82910333	116910428	Mouse
10766454	Char10_m	P. chabaudi malaria resistance QTL 10 (mouse)					9	82910333	116910428	Mouse
1301487	Nociq1_m	nociceptive sensitivity inflammatory QTL 1 (mouse)			Not determined		9	84528818	118528921	Mouse
10412180	Msam3_m	muscle, skeletal, activity measure 3 (mouse)			Not determined		9	85897510	108641186	Mouse
1300549	Bbaa17_m	B. burgdorferi-associated arthritis 17 (mouse)			Not determined		9	86230401	120230530	Mouse
1302103	Dob2_m	dietary obesity 2 (mouse)			Not determined		9	86239845	120289624	Mouse
11251716	Siim2_m	stress induced immobility 2 (mouse)					9	86748483	120748483	Mouse
12880422	V25Dq6_m	vitamin D inactive form serum level QTL 6 (mouse)					9	87800000	121800000	Mouse
10412242	Alpq8_m	alcohol preference QTL 8 (mouse)			Not determined		9	89284925	123284925	Mouse
1301649	Psl1_m	promotion susceptibility QTL 1 (mouse)			Not determined		9	89412277	123412396	Mouse
18182932	Metl3_m	metabolite locus 3, N-acetylglutamate (mouse)					9	89563342	123563342	Mouse
1357657	Pymr_m	Plasmodium yoelli malaria resistance (mouse)			Not determined		9	89977005	118938021	Mouse
12910770	Splic1_m	spleen iron content 1 (mouse)					9	91413879	124595110	Mouse
12910772	Lvic6_m	liver iron content 6 (mouse)					9	91413879	124595110	Mouse
12910773	Splic3_m	spleen iron content 3 (mouse)					9	91413879	124595110	Mouse
1558767	Skmw11_m	skeletal muscle weight 11 (mouse)			Not determined		9	91641084	124595110	Mouse
13463474	Hbbcq5_m	hemoglobin concentration QTL 5 (mouse)					9	91641084	124595110	Mouse
13463475	Hctq7_m	hematocrit QTL 7 (mouse)					9	91641084	124595110	Mouse
13463477	Rbc9_m	red blood cell count 9 (mouse)					9	91641084	124595110	Mouse
13463478	Mchq18_m	mean corpuscular hemoglobin QTL 18 (mouse)					9	91641084	124595110	Mouse
13463480	Mchcq2_m	mean corpuscular hemoglobin concentration QTL 2 (mouse)					9	91641084	124595110	Mouse
12904937	Edlmmq9_m	extensor digitorum longus muscle mass QTL 9 (mouse)					9	91683173	124595110	Mouse
12904947	Tammq7_m	tibialis anterior muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
12904961	Gmmq7_m	gastrocnemius muscle mass QTL 7 (mouse)					9	91683173	124595110	Mouse
1302001	Bdln5_m	body length 5 (mouse)			Not determined		9	93762590	124595110	Mouse
1301484	Bwq6_m	body weight (mouse)			Not determined		9	93762590	124595110	Mouse
14746992	Manh67_m	mandible shape 67 (mouse)					9	94036768	124595110	Mouse
11081166	Psl5_m	promotion susceptibility QTL 5 (mouse)					9	94981301	112872929	Mouse
11537364	Cnes5_m	C. neoformans susceptibility locus 5 (mouse)					9	96917590	124595110	Mouse
1301297	Lcho1_m	liver cholesterol 1 (mouse)			Not determined		9	101060861	124595110	Mouse
1357627	Tgq2_m	triglyceride QTL 2 (mouse)			Not determined		9	102000187	124595110	Mouse
1357648	Obq18_m	obesity QTL 18 (mouse)			Not determined		9	102000187	124595110	Mouse
1301789	Pbwg4_m	postnatal body weight growth 4 (mouse)			Not determined		9	103289445	124595110	Mouse
10412290	Pvacm1l_m	plasma vascular cell adhesion molecule 1 levels (mouse)			Not determined		9	103289445	124595110	Mouse
12879896	Berr3_m	berghei resistance locus 3 (mouse)					9	103289445	124595110	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	238
Count of miRNA genes:	114
Interacting mature miRNAs:	118
Transcripts:	ENSMUST00000085114, ENSMUST00000164965
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001146701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_028843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC151729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK006797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC049769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000085114 ⟹ ENSMUSP00000082195

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	106,499,992 - 106,502,254 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000164965 ⟹ ENSMUSP00000126039

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	106,499,967 - 106,502,244 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000215037 ⟹ ENSMUSP00000149801

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	106,500,001 - 106,502,248 (+)	Ensembl

RefSeq Acc Id:

NM_001146701 ⟹ NP_001140173

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	106,377,166 - 106,379,449 (+)	NCBI
GRCm38	9	106,499,967 - 106,502,250 (+)	ENTREZGENE
MGSCv37	9	106,402,298 - 106,404,581 (+)	RGD
Celera	9	106,118,274 - 106,120,561 (+)	RGD
cM Map	9		ENTREZGENE

Sequence:

show sequence

GTTCACATCAATGCCGGAGGAGCACAGACCTGAGGGGATTTGAACCATCTACACCCAATCCATG
CGTGAATAATGTCCAAGAAAAAACAGGAGCTTTCTGAAAAGGACCAAGTTGTAAAGATCCAAGC
TTGGTGGCGCGGTACACTGGTACGTCGGTCGCTGTTGCACGCAGCCCTCAGCGCCTGGATCATT
CAATGCTGGTGGCGGTTAATACTGCCAAAGATTATGGAGAAGAGGCGGCAGTCCATGCTGGATA
CCTTCCAACAGGAGCAGTGGGCAGTCGTCAGGTTGCAGTCCTGGATCCGCATGTGGCGTATCCG
CAGGCGTTACTGCCGGTTGCTTAAGGCTGTCCGGACCATCCAGTCTCACTGGAGAGGTCATACT
TGCTCTTCACGGGGTGTTATCAAGGGCCAATACCGAATTTCGACCAGCCAGATGCATCTTGAGC
TGGAGGTCTTGCTGGGTTCGGGGCCTTGTATTGTGACCGAATGTATTCCCCTCCCAATAAAACA
GTGAGGCGGTGGTCGTA

hide sequence

RefSeq Acc Id:

NM_028843 ⟹ NP_083119

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	106,377,166 - 106,379,448 (+)	NCBI
GRCm38	9	106,499,967 - 106,502,249 (+)	NCBI
MGSCv37	9	106,402,298 - 106,404,581 (+)	RGD
Celera	9	106,118,274 - 106,120,561 (+)	RGD
cM Map	9		ENTREZGENE

Sequence:

show sequence

GTTCACATCAATGCCGGAGGAGCACAGACCTGAGGGGATTTGAACCATCTACACCCAATCCATG
CGTGAATAATGGGTGAGGAACAGCAGAAGCCTGAAGAACTTAATGCACCTACTGACGATGCTCC
TCAGGAGAAGCAGCAGCCAGCTGATCTATCCTCAGAAACAGAGAAGGCAAAGTCCAAGAAAAAA
CAGGAGCTTTCTGAAAAGGACCAAGTTGTAAAGATCCAAGCTTGGTGGCGCGGTACACTGGTAC
GTCGGTCGCTGTTGCACGCAGCCCTCAGCGCCTGGATCATTCAATGCTGGTGGCGGTTAATACT
GCCAAAGATTATGGAGAAGAGGCGGCAGTCCATGCTGGATACCTTCCAACAGGAGCAGTGGGCA
GTCGTCAGGTTGCAGTCCTGGATCCGCATGTGGCGTATCCGCAGGCGTTACTGCCGGTTGCTTA
AGGCTGTCCGGACCATCCAGTCTCACTGGAGAGGTCATACTTGCTCTTCACGGGGTGTTATCAA
GGGCCAATACCGAATTTCGACCAGCCAGATGCATCTTGAGCTGGAGGTCTTGCTGGGTTCGGGG
CCTTGTATTGTGACCGAATGTATTCCCCTCCCAATAAAACAGTGAGGCGGTGGTCGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001140173	(Get FASTA)	NCBI Sequence Viewer
	NP_083119	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH49769	(Get FASTA)	NCBI Sequence Viewer
	BAB24744	(Get FASTA)	NCBI Sequence Viewer
	EDL21152	(Get FASTA)	NCBI Sequence Viewer
	Q9D9K8	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001140173 ⟸ NM_001146701
- Peptide Label:	isoform 2
- UniProtKB:	Q9D9K8 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSKKKQELSEKDQVVKIQAWWRGTLVRRSLLHAALSAWIIQCWWRLILPKIMEKRRQSMLDTFQ QEQWAVVRLQSWIRMWRIRRRYCRLLKAVRTIQSHWRGHTCSSRGVIKGQYRISTSQMHLELEV LLGSGPCIVTECIPLPIKQ hide sequence

RefSeq Acc Id:	NP_083119 ⟸ NM_028843
- Peptide Label:	isoform 1
- UniProtKB:	Q9D9K8 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGEEQQKPEELNAPTDDAPQEKQQPADLSSETEKAKSKKKQELSEKDQVVKIQAWWRGTLVRRS LLHAALSAWIIQCWWRLILPKIMEKRRQSMLDTFQQEQWAVVRLQSWIRMWRIRRRYCRLLKAV RTIQSHWRGHTCSSRGVIKGQYRISTSQMHLELEVLLGSGPCIVTECIPLPIKQ hide sequence

RefSeq Acc Id:

ENSMUSP00000126039 ⟸ ENSMUST00000164965

RefSeq Acc Id:

ENSMUSP00000082195 ⟸ ENSMUST00000085114

RefSeq Acc Id:

ENSMUSP00000149801 ⟸ ENSMUST00000215037

Protein Domains

Promoters

RGD ID:

8670742

Promoter ID:

EPDNEW_M13402

Type:

initiation region

Name:

Iqcf1_1

Description:

Mus musculus IQ motif containing F1 , transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	106,499,990 - 106,500,050	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1921517	AgrOrtholog
Ensembl Genes	ENSMUSG00000066383	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000082195	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000126039	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000149801	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000085114	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000164965	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000215037	UniProtKB/TrEMBL
InterPro	IQ_motif_EF-hand-BS	UniProtKB/Swiss-Prot
	IQCF	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
KEGG Report	mmu:74267	UniProtKB/Swiss-Prot
MGD	MGI:1921517	ENTREZGENE
NCBI Gene	74267	ENTREZGENE
PANTHER	PTHR21633	UniProtKB/Swiss-Prot
Pfam	PF00612	UniProtKB/Swiss-Prot
PhenoGen	Iqcf1	PhenoGen
PROSITE	PS50096	UniProtKB/Swiss-Prot
SMART	SM00015	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniGene	Mm.116682	ENTREZGENE
UniProt	A0A1L1SS97_MOUSE	UniProtKB/TrEMBL
	IQCF1_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q810M2	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)