UCHL1 (ubiquitin C-terminal hydrolase L1)

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Gene: UCHL1 (ubiquitin C-terminal hydrolase L1) Chlorocebus sabaeus

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Symbol:

UCHL1

Name:

ubiquitin C-terminal hydrolase L1

RGD ID:

18727027

Description:

ENCODES a protein that exhibits alpha-2A adrenergic receptor binding (inferred); cysteine-type deubiquitinase activity (inferred); cysteine-type endopeptidase activity (inferred); INVOLVED IN adult walking behavior (ortholog); axon target recognition (ortholog); axonal transport of mitochondrion (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Deglutition Disorders (ortholog); Diaphragmatic Hernia (ortholog); FOUND IN axon (inferred); axon cytoplasm (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ubiquitin carboxyl-terminal hydrolase isozyme L1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	9,074,961 - 9,086,606 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	9,074,923 - 9,086,517 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	55,406,774 - 55,418,174 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

Deglutition Disorders (ISO)

Diaphragmatic Hernia (ISO)

Esophageal Neoplasms (ISO)

Gallbladder Neoplasms (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

hereditary spastic paraplegia 79A (ISO)

hereditary spastic paraplegia 79B (ISO)

Hyperglycinemia, Lactic Acidosis, and Seizures (ISO)

lung non-small cell carcinoma (ISO)

neuroaxonal dystrophy (ISO)

Parkinson's disease (ISO)

Parkinson's Disease 5 (ISO)

peripheral nervous system disease (ISO)

retinal disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult walking behavior (IEA,ISO)

axon target recognition (IEA,ISO)

axonal transport of mitochondrion (IEA,ISO)

axonogenesis (IEA,ISO)

cellular response to xenobiotic stimulus (IEA)

eating behavior (IEA,ISO)

male germ cell proliferation (IEA,ISO)

muscle cell development (IEA,ISO)

negative regulation of MAP kinase activity (ISO)

neuromuscular process (IEA,ISO)

positive regulation of glycolytic process (IEA)

protein deubiquitination (IEA)

proteolysis (IEA)

response to ischemia (IEA,ISO)

substantia nigra development (ISO)

ubiquitin-dependent protein catabolic process (IEA,ISO)

Cellular Component

axon (IEA)

axon cytoplasm (IEA)

cytoplasm (IEA)

cytosol (IEA)

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IEA)

membrane (IEA)

neuron projection terminus (IEA)

neuronal cell body (IEA)

nucleoplasm (IEA)

plasma membrane (IEA)

Molecular Function

alpha-2A adrenergic receptor binding (IEA)

cysteine-type deubiquitinase activity (IEA)

cysteine-type endopeptidase activity (IEA)

cysteine-type peptidase activity (IEA)

omega peptidase activity (IEA)

protein binding (ISO)

ribosome binding (IEA)

ubiquitin binding (IEA)

ubiquitin protein ligase binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

UCHL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	9,074,961 - 9,086,606 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	9,074,923 - 9,086,517 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	55,406,774 - 55,418,174 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

UCHL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	41,256,928 - 41,268,455 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	41,256,413 - 41,268,455 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	41,258,945 - 41,270,472 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	40,953,686 - 40,965,203 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	41,099,856 - 41,111,373	NCBI
Celera	4	41,702,199 - 41,713,746 (+)	NCBI		Celera
Cytogenetic Map	4	p13	NCBI
HuRef	4	40,580,844 - 40,592,391 (+)	NCBI		HuRef
CHM1_1	4	41,259,044 - 41,270,591 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	41,230,716 - 41,242,242 (+)	NCBI		T2T-CHM13v2.0

Uchl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	66,833,464 - 66,844,577 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	66,833,434 - 66,844,577 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	66,676,121 - 66,687,234 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	66,676,091 - 66,687,234 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	67,067,360 - 67,078,473 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	66,955,425 - 66,966,369 (+)	NCBI		MGSCv36	mm8
Celera	5	63,976,841 - 63,987,914 (+)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI
cM Map	5	35.95	NCBI

Uchl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	41,838,859 - 41,849,743 (-)	NCBI		GRCr8
mRatBN7.2	14	41,485,031 - 41,495,590 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	41,485,031 - 41,495,590 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	41,831,048 - 41,841,616 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	43,131,128 - 43,141,696 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	41,611,942 - 41,622,510 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	43,133,224 - 43,143,942 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	43,133,218 - 43,143,973 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	42,928,247 - 42,938,981 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	44,114,392 - 44,124,947 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	44,116,782 - 44,127,338 (-)	NCBI
Celera	14	40,639,549 - 40,650,302 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

Uchl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	6,367,460 - 6,380,462 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955443	6,367,519 - 6,379,638 (-)	NCBI	ChiLan1.0	ChiLan1.0

UCHL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	41,440,064 - 41,451,601 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	41,633,489 - 41,645,029 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	35,580,755 - 35,592,314 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	41,432,367 - 41,440,129 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	41,428,759 - 41,440,129 (+)	Ensembl	panpan1.1		panPan2

UCHL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	71,396,694 - 71,430,395 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	71,370,822 - 71,411,350 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	73,946,978 - 73,961,370 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	72,157,557 - 72,171,966 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	3	71,427,585 - 71,441,983 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	71,589,640 - 71,604,050 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	71,972,745 - 71,987,146 (-)	NCBI		UU_Cfam_GSD_1.0

Uchl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	37,734,649 - 37,746,530 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	8,551,603 - 8,563,651 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	8,551,749 - 8,563,586 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UCHL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	32,353,246 - 32,367,332 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	32,353,766 - 32,367,288 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	33,970,620 - 33,982,399 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Uchl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	25,784,257 - 25,797,549 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624761	25,786,028 - 25,797,641 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008017554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000015172 ⟹ ENSCSAP00000013119

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	27	9,074,923 - 9,086,517 (-)	Ensembl

RefSeq Acc Id:

XM_008017554 ⟹ XP_008015745

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	27	9,074,961 - 9,086,606 (-)	NCBI
Vero_WHO_p1.0	NW_023666047	55,406,774 - 55,418,174 (-)	NCBI

Sequence:

show sequence

ATGGTAGAAAGGATGGGTTTCCAGAAACTTCGCCCAAAATTAAAGACTCCATCAAAAGGACTGC
TCCATACACTCAAGGAACACCCACCAACAAATCCCGTCTCCACAACCACCAGATTATCTCACCG
GCGAGTGAGACTGCAAGGTTTGGGGGCCCGGCCGTACCACTCCGCGCTGCGCACGGGGGTTTCG
TACCCATCTGGCCGCGACCGGCCGTTTCCCCCTCGCTTGGTTCTGCCCCTGCTCCCCCTGCGCA
GGCCTCACAGTGCGTCTGGCCGGCGCTTTATAACTGCAGCCTGGGCGGCTCCACTAGCTGTTTT
TCGTCTTCCCTGGGTTATTTCTATCGGGCGCACCGCGAAGATGCAGCTGAAGCCGATGGAGATC
AACCCCGAGATGCTGAACAAAGTGCTGTCCCGGCTGGGGGTCGCCGGCCAGTGGCGCTTCGTGG
ACGTGCTGGGGCTGGAAGAGGAGTCTCTGGGCTCGGTGCCAGCGCCTGCCTGCGCGCTGCTGCT
GCTGTTTCCACTCACGGCCCAGCATGAGAACTTCAGGAAAAAACAGATTGAAGAGCTGAAGGGA
CAAGAAGTTAGTCCTAAAGTGTACTTCATGAAGCAGACCATTGGGAATTCCTGTGGCACAATCG
GACTTATACACGCAGTGGCCAATAATCAAGATAAACTGGGATTTGAGGATGGATCAGTCCTGAA
ACAGTTTCTTTCTGAAACAGAGAAAATGTCCCCTGAAGACAGAGCAAAATGCTTTGAAAAGAAT
GAGGCCATACAGGCAGCCCATGATGCCGTGGCACAGGAAGGCCAATGTCGGGTAGATGACAAGG
TGAATTTCCATTTCATTCTGTTTAACAACGTGGATGGCCACCTCTATGAACTGGATGGACGAAT
GCCTTTTCCAGTGAACCATGGCGCCAGTTCAGAGGGCACCCTGCTGCAGGACGCTGCCAAGGTC
TGCAGAGAATTCACCGAGCGTGAGCAAGGAGAAGTCCGCTTCTCTGCCGTGGCTCTCTGCAAGG
CAGCCTAATTCTCTGTGGGAGGGACTTTGCTGATTTCCCCTCTTCCCTTCAACGTGAAAATATA
TACCCCCCCCCCCATGCAGTCTATAATGCTTCAGTACTTGTGAAACACAGCTGTTCTGTTCTGC
AGACACGCCTTCCCCTCAGCCACACCCAGGCGCTTAAGCACAAGTAGAGTGCACAGCTGTCCAC
TGGGCCGATGTGGTGTGAGCTTCAGATGGCGAAGCATTCTCCCCAGTGTATGTCTTGTATCCAA
TATCTAACGCTTTAAATGGCTACTTTGGTTTCTGTCTGTAAGTTAAGACCCTTGGATGTGGTTT
AATTGTTTGTCCTCAAAAGGAATAAAACTTTTCTGCTGATAAGGTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008015745	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000013119.1

RefSeq Acc Id:	XP_008015745 ⟸ XM_008017554
- UniProtKB:	A0A0D9RWY0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000013119 ⟸ ENSCSAT00000015172

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000017078	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000015172.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.532.10	UniProtKB/TrEMBL
InterPro	Papain-like_cys_pep_sf	UniProtKB/TrEMBL
	Peptidase_C12_UCH	UniProtKB/TrEMBL
	Peptidase_C12_UCH_sf	UniProtKB/TrEMBL
NCBI Gene	UCHL1	ENTREZGENE
PANTHER	PTHR10589	UniProtKB/TrEMBL
	PTHR10589:SF19	UniProtKB/TrEMBL
Pfam	Peptidase_C12	UniProtKB/TrEMBL
PRINTS	UBCTHYDRLASE	UniProtKB/TrEMBL
PROSITE	UCH_1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54001	UniProtKB/TrEMBL
UniProt	A0A0D9RWY0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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