ABHD5 (abhydrolase domain containing 5, lysophosphatidic acid acyltransferase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ABHD5 (abhydrolase domain containing 5, lysophosphatidic acid acyltransferase) Chlorocebus sabaeus
Analyze
Symbol: ABHD5
Name: abhydrolase domain containing 5, lysophosphatidic acid acyltransferase
RGD ID: 18726002
Description: ENCODES a protein that exhibits triacylglycerol lipase activity (ortholog); INVOLVED IN lipid metabolic process (ortholog); ASSOCIATED WITH autosomal recessive congenital ichthyosis 1 (ortholog); Chanarin-Dorfman syndrome (ortholog); colon adenocarcinoma (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 1-acylglycerol-3-phosphate O-acyltransferase ABHD5; abhydrolase domain containing 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1225,109,699 - 5,139,021 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl225,109,765 - 5,137,673 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041162,051,858 - 162,081,174 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ABHD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1225,109,699 - 5,139,021 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl225,109,765 - 5,137,673 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041162,051,858 - 162,081,174 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ABHD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38343,690,870 - 43,734,371 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl343,690,108 - 43,734,371 (+)EnsemblGRCh38hg38GRCh38
GRCh37343,732,362 - 43,775,863 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36343,707,379 - 43,735,296 (+)NCBINCBI36Build 36hg18NCBI36
Build 34343,707,378 - 43,735,295NCBI
Celera343,670,699 - 43,702,531 (+)NCBICelera
Cytogenetic Map3p21.33NCBI
HuRef343,775,563 - 43,807,394 (+)NCBIHuRef
CHM1_1343,682,530 - 43,714,373 (+)NCBICHM1_1
T2T-CHM13v2.0343,706,458 - 43,749,966 (+)NCBIT2T-CHM13v2.0
Abhd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399122,180,681 - 122,210,589 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9122,180,673 - 122,210,589 (+)EnsemblGRCm39 Ensembl
GRCm389122,351,616 - 122,381,524 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9122,351,608 - 122,381,524 (+)EnsemblGRCm38mm10GRCm38
MGSCv379122,260,734 - 122,290,641 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369122,200,314 - 122,230,221 (+)NCBIMGSCv36mm8
Celera9122,816,005 - 122,845,910 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map973.03NCBI
Abhd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88130,877,834 - 130,903,947 (+)NCBIGRCr8
mRatBN7.28122,000,241 - 122,026,447 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8122,000,389 - 122,026,447 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8127,595,594 - 127,619,764 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08125,794,662 - 125,818,828 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08123,620,818 - 123,645,005 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08130,973,222 - 131,001,448 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,973,201 - 131,001,458 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08130,136,551 - 130,164,777 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48122,148,937 - 122,173,147 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18122,168,673 - 122,192,884 (+)NCBI
Celera8121,121,379 - 121,145,558 (+)NCBICelera
Cytogenetic Map8q32NCBI
Abhd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542027,482,709 - 27,508,360 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542027,484,500 - 27,508,360 (-)NCBIChiLan1.0ChiLan1.0
ABHD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2243,637,759 - 43,677,319 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1343,642,524 - 43,672,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0343,580,752 - 43,612,637 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1344,640,215 - 44,669,885 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl344,640,215 - 44,669,885 (+)Ensemblpanpan1.1panPan2
ABHD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1232,584,813 - 2,619,204 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl232,586,678 - 2,737,583 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,622,390 - 2,656,835 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0232,837,297 - 2,871,778 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl232,837,304 - 2,871,784 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1232,673,959 - 2,708,185 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0232,804,668 - 2,839,064 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0232,772,747 - 2,807,406 (-)NCBIUU_Cfam_GSD_1.0
Abhd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118199,292,423 - 199,319,725 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366951,644,581 - 1,672,117 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366951,644,758 - 1,672,024 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABHD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1327,006,208 - 27,056,744 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11327,006,331 - 27,053,760 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21329,834,219 - 29,881,698 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q12-q22NCBI
Abhd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473076,414,626 - 76,436,156 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473076,414,732 - 76,436,177 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ABHD5
616 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000014796   ⟹   ENSCSAP00000012757
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl225,109,765 - 5,137,673 (+)Ensembl
RefSeq Acc Id: XM_007983850   ⟹   XP_007982041
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1225,109,699 - 5,139,021 (+)NCBI
Vero_WHO_p1.0NW_023666041162,051,858 - 162,081,173 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007983851   ⟹   XP_007982042
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1225,109,908 - 5,139,021 (+)NCBI
Vero_WHO_p1.0NW_023666041162,051,858 - 162,080,950 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038004088   ⟹   XP_037860016
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041162,053,238 - 162,081,174 (-)NCBI
RefSeq Acc Id: XR_005242119
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041162,051,858 - 162,081,173 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007982041 (Get FASTA)   NCBI Sequence Viewer  
  XP_007982042 (Get FASTA)   NCBI Sequence Viewer  
  XP_037860016 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012757
  ENSCSAP00000012757.1
RefSeq Acc Id: XP_007982041   ⟸   XM_007983850
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RVW8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007982042   ⟸   XM_007983851
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000012757   ⟸   ENSCSAT00000014796
RefSeq Acc Id: XP_037860016   ⟸   XM_038004088
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016699 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014796.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  AB_hydrolase_1 UniProtKB/TrEMBL
KEGG Report csab:103227480 UniProtKB/TrEMBL
NCBI Gene ABHD5 ENTREZGENE
PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 UniProtKB/TrEMBL
  RE40534P-RELATED UniProtKB/TrEMBL
Pfam Abhydrolase_1 UniProtKB/TrEMBL
PRINTS ABHYDROLASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A0D9RVW8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-28 ABHD5  abhydrolase domain containing 5, lysophosphatidic acid acyltransferase  ABHD5  abhydrolase domain containing 5  Symbol and/or name change 5135510 APPROVED