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Gene: TPR (translocated promoter region, nuclear basket protein) Chlorocebus sabaeus

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Symbol:

TPR

Name:

translocated promoter region, nuclear basket protein

RGD ID:

18716991

Description:

ENCODES a protein that exhibits protein-membrane adaptor activity (ortholog); INVOLVED IN cellular response to interferon-alpha (ortholog); nuclear matrix organization (ortholog); nuclear pore complex assembly (ortholog); ASSOCIATED WITH Autosomal Recessive Intellectual Developmental Disorder 79 (ortholog); camptodactyly-arthropathy-coxa vara-pericarditis syndrome (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN kinetochore (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nucleoprotein TPR

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	43,056,605 - 43,120,570 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	43,056,886 - 43,123,474 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	44,245,730 - 44,312,643 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TPR	Green Monkey	Autosomal Recessive Intellectual Developmental Disorder 79		ISO	TPR (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual developmental disorder and autosomal recessive 79	ClinVar	PMID:34494102
TPR	Green Monkey	camptodactyly-arthropathy-coxa vara-pericarditis syndrome		ISO	TPR (Homo sapiens)	8554872	ClinVar Annotator: match by term: Camptodactyly-arthropathy-coxa vara-pericarditis syndrome	ClinVar	PMID:25741868 and PMID:29397575
TPR	Green Monkey	gastrointestinal stromal tumor		ISO	TPR (Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
TPR	Green Monkey	genetic disease		ISO	TPR (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar
TPR	Green Monkey	intellectual disability		ISO	TPR (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar
TPR	Green Monkey	parathyroid carcinoma		ISO	TPR (Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TPR	Green Monkey	Thyroid Neoplasms		ISO	TPR (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:23811263

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TPR	Green Monkey	Autosomal Recessive Intellectual Developmental Disorder 79		ISO	TPR (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TPR	Green Monkey	cellular response to heat	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	cellular response to interferon-alpha	involved_in	ISO	Tpr (Mus musculus)	9068941	PMID:12513910	UniProt	PMID:12513910
TPR	Green Monkey	mitotic spindle assembly checkpoint signaling	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	mRNA export from nucleus	involved_in	IEA	PANTHER:PTN000431192	150520179		TreeGrafter	GO_REF:0000118
TPR	Green Monkey	mRNA export from nucleus in response to heat stress	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	negative regulation of RNA export from nucleus	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	negative regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	negative regulation of translational initiation	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	nuclear matrix organization	NOT\|involved_in	ISO	TPR (Homo sapiens)	9068941	PMID:11952838	UniProt	PMID:11952838
TPR	Green Monkey	nuclear pore complex assembly	NOT\|involved_in	ISO	Tpr (Rattus norvegicus)	9068941	PMID:11839768	UniProt	PMID:11839768 and REF_RGD_ID:8553300
TPR	Green Monkey	nuclear pore complex assembly	NOT\|involved_in	ISO	TPR (Homo sapiens)	9068941	PMID:12802065	UniProt	PMID:12802065
TPR	Green Monkey	nuclear pore organization	NOT\|involved_in	ISO	TPR (Homo sapiens)	9068941	PMID:11952838	UniProt	PMID:11952838
TPR	Green Monkey	nuclear pore organization	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	positive regulation of heterochromatin formation	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	positive regulation of intracellular protein transport	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	positive regulation of mitotic cell cycle spindle assembly checkpoint	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	positive regulation of protein export from nucleus	involved_in	ISO	Tpr (Rattus norvegicus)	9068941	PMID:11839768	UniProt	PMID:11839768 and REF_RGD_ID:8553300
TPR	Green Monkey	positive regulation of protein import into nucleus	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	protein export from nucleus	NOT\|involved_in	ISO	TPR (Homo sapiens)	9068941	PMID:11952838	UniProt	PMID:11952838
TPR	Green Monkey	protein export from nucleus		ISO	Tpr (Rattus norvegicus)	9068941		RGD	PMID:11839768 and REF_RGD_ID:8553300
TPR	Green Monkey	protein import into nucleus	NOT\|involved_in	ISO	TPR (Homo sapiens)	9068941	PMID:9864356	UniProt	PMID:9864356
TPR	Green Monkey	protein import into nucleus	involved_in	IEA	InterPro:IPR012929	150520179		InterPro	GO_REF:0000002
TPR	Green Monkey	protein import into nucleus	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	protein import into nucleus	NOT\|involved_in	ISO	TPR (Homo sapiens)	9068941	PMID:11952838	UniProt	PMID:11952838
TPR	Green Monkey	regulation of mitotic sister chromatid separation	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	regulation of mitotic spindle assembly	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	regulation of mitotic spindle assembly	involved_in	IEA	PANTHER:PTN000431192	150520179		TreeGrafter	GO_REF:0000118
TPR	Green Monkey	regulation of mRNA export from nucleus	NOT\|involved_in	ISO	TPR (Homo sapiens)	9068941	PMID:22253824	UniProt	PMID:22253824
TPR	Green Monkey	regulation of protein export from nucleus	NOT\|involved_in	ISO	TPR (Homo sapiens)	9068941	PMID:22253824	UniProt	PMID:22253824
TPR	Green Monkey	regulation of protein import into nucleus	NOT\|involved_in	ISO	Tpr (Rattus norvegicus)	9068941	PMID:11839768	UniProt	PMID:11839768 and REF_RGD_ID:8553300
TPR	Green Monkey	regulation of protein import into nucleus	NOT\|involved_in	ISO	TPR (Homo sapiens)	9068941	PMID:22253824	UniProt	PMID:22253824
TPR	Green Monkey	regulation of protein localization	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	regulation of protein stability	NOT\|involved_in	ISO	TPR (Homo sapiens)	9068941	PMID:21613532	UniProt	PMID:21613532
TPR	Green Monkey	response to epidermal growth factor	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	RNA export from nucleus	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	RNA import into nucleus	involved_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TPR	Green Monkey	cytoplasm	located_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	cytoplasmic dynein complex	part_of	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	kinetochore	NOT\|located_in	ISO	TPR (Homo sapiens)	9068941	PMID:19273613	UniProt	PMID:19273613
TPR	Green Monkey	kinetochore	located_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	mitotic spindle	located_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	nuclear envelope	located_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	nuclear inclusion body	located_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	nuclear membrane	located_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	nuclear periphery	located_in	IEA	ARBA:ARBA00029208	150520179		UniProt	GO_REF:0000117
TPR	Green Monkey	nuclear periphery	located_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	nuclear pore	part_of	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	nuclear pore	part_of	IEA	PANTHER:PTN000431192	150520179		TreeGrafter	GO_REF:0000118
TPR	Green Monkey	nuclear pore	part_of	IEA	ARBA:ARBA00026270	150520179		UniProt	GO_REF:0000117
TPR	Green Monkey	nuclear pore nuclear basket	part_of	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	nucleus	located_in	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
TPR	Green Monkey	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
TPR	Green Monkey	chromatin binding	enables	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	dynein complex binding	enables	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	heat shock protein binding	enables	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	mitogen-activated protein kinase binding	enables	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	mRNA binding	enables	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	protein binding	enables	ISO	UniProtKB:P0DOV2	9068941	PMID:12513910	UniProt	PMID:12513910
TPR	Green Monkey	protein binding	enables	ISO	UniProtKB:Q9Y6D9	9068941	PMID:24581499	IntAct	PMID:24581499
TPR	Green Monkey	protein binding	enables	ISO	UniProtKB:P27361 and UniProtKB:P28482	9068941	PMID:18794356	UniProt	PMID:18794356
TPR	Green Monkey	protein binding	enables	ISO	UniProtKB:Q13257 and UniProtKB:Q9Y6D9	9068941	PMID:18981471	UniProt	PMID:18981471
TPR	Green Monkey	protein binding	enables	ISO	UniProtKB:P49790 more ...	9068941	PMID:20133940	UniProt	PMID:20133940
TPR	Green Monkey	protein binding	enables	ISO	UniProtKB:P33981 more ...	9068941	PMID:19273613	UniProt	PMID:19273613
TPR	Green Monkey	protein binding	enables	ISO	UniProtKB:P28482	9068941	PMID:22253824	UniProt	PMID:22253824
TPR	Green Monkey	protein binding	enables	ISO	UniProtKB:P49790 and UniProtKB:Q9UKX7	9068941	PMID:12802065	UniProt	PMID:12802065
TPR	Green Monkey	protein binding	enables	ISO	UniProtKB:P42858	9068941	PMID:15654337	UniProt	PMID:15654337
TPR	Green Monkey	protein binding	enables	ISO	UniProtKB:Q13330	9068941	PMID:24970816	UniProt	PMID:24970816
TPR	Green Monkey	protein binding	enables	ISO	UniProtKB:Q9H2G2	9068941	PMID:26094769	UniProt	PMID:26094769
TPR	Green Monkey	protein binding	enables	ISO	UniProtKB:Q00613	9068941	PMID:17897941	UniProt	PMID:17897941
TPR	Green Monkey	protein homodimerization activity	enables	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	protein-membrane adaptor activity	NOT\|enables	ISO	TPR (Homo sapiens)	9068941	PMID:12802065	UniProt	PMID:12802065
TPR	Green Monkey	structural constituent of nuclear pore	enables	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107
TPR	Green Monkey	structural constituent of nuclear pore	enables	IEA	PANTHER:PTN000431192	150520179		TreeGrafter	GO_REF:0000118
TPR	Green Monkey	tubulin binding	enables	IEA	UniProtKB:P12270 and ensembl:ENSP00000356448	150520179		Ensembl	GO_REF:0000107

PMID:22301074	PMID:30032202

TPR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	43,056,605 - 43,120,570 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	43,056,886 - 43,123,474 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	44,245,730 - 44,312,643 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TPR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	186,311,652 - 186,375,253 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	186,311,652 - 186,375,693 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	186,280,784 - 186,344,385 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	184,547,407 - 184,611,080 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	183,014,615 - 183,076,114	NCBI
Celera	1	159,391,490 - 159,455,165 (-)	NCBI		Celera
Cytogenetic Map	1	q31.1	NCBI
HuRef	1	157,515,355 - 157,578,976 (-)	NCBI		HuRef
CHM1_1	1	187,702,490 - 187,766,196 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	185,666,310 - 185,729,984 (-)	NCBI		T2T-CHM13v2.0

Tpr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	150,268,544 - 150,325,686 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	150,268,589 - 150,325,686 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	150,392,802 - 150,449,935 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	150,392,838 - 150,449,935 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	152,239,968 - 152,297,065 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	152,155,071 - 152,212,147 (+)	NCBI		MGSCv36	mm8
Celera	1	152,832,018 - 152,889,087 (+)	NCBI		Celera
Cytogenetic Map	1	G1	NCBI
cM Map	1	63.84	NCBI

Tpr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	64,974,419 - 65,037,604 (+)	NCBI		GRCr8
mRatBN7.2	13	62,424,312 - 62,487,502 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	62,424,312 - 62,487,496 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	65,070,740 - 65,133,881 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	66,341,843 - 66,405,114 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	63,603,135 - 63,666,355 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	67,611,685 - 67,672,833 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	67,611,708 - 67,672,827 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	72,576,506 - 72,637,654 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	64,688,585 - 64,753,555 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	64,702,435 - 64,767,635 (+)	NCBI
Celera	13	62,384,785 - 62,447,122 (+)	NCBI		Celera
Cytogenetic Map	13	q21	NCBI

Tpr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	24,742,525 - 24,805,989 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	24,742,525 - 24,805,989 (-)	NCBI	ChiLan1.0	ChiLan1.0

TPR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	63,343,613 - 63,405,202 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	63,025,048 - 63,086,633 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	161,842,037 - 161,903,567 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	165,993,726 - 166,055,223 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	165,993,726 - 166,055,223 (-)	Ensembl	panpan1.1		panPan2

TPR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	19,376,951 - 19,442,368 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	19,376,975 - 19,442,303 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	18,898,638 - 18,964,055 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	19,112,960 - 19,178,509 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	19,112,979 - 19,179,044 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	19,019,776 - 19,085,277 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	19,129,102 - 19,194,530 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	19,259,646 - 19,325,389 (-)	NCBI		UU_Cfam_GSD_1.0

Tpr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	86,203,944 - 86,264,933 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	4,050,794 - 4,111,682 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	4,050,693 - 4,111,682 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TPR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	127,481,684 - 127,540,398 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	127,481,678 - 127,540,393 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	139,933,094 - 139,992,501 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Tpr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624814	7,249,278 - 7,306,235 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624814	7,249,379 - 7,306,239 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in TPR
1026 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20


RefSeq Transcripts	XM_007989156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000011383 ⟹ ENSCSAP00000009457

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	25	43,056,886 - 43,123,474 (+)	Ensembl

RefSeq Acc Id:

XM_007989156 ⟹ XP_007987347

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	43,056,605 - 43,120,570 (+)	NCBI
Vero_WHO_p1.0	NW_023666055	44,245,730 - 44,312,643 (+)	NCBI

Sequence:

show sequence

CTGCGGTCGCCACCCCGCCCCCTTCTGGGCGCCATAGAGAGCGTGGCGGTAGCCTGGGGCCTGCCGTCCGCCCCTACTGGGACCGATGCCCTCTAGTGGCTCAGTGTCCAGAAGCCGCCAAAGAGGAC
GATCCATGGCATCCCGGGGCTTTGATGGGTCCCGCCGCGGGAGTCTCCGGCGGGCGGGCGCGCGCGAGCCACCGAGCGAGGTGGTAGAGGCGGCTGCCCAGGCGTCTGGGTCCTCCTGGTCTTCGCCT
TTCTTCTCCGCTTCTACCCCGTCAGCCGCTGCCACTGGGGCCCCTGGCCCCATCGACATGGCGGCGGTGTTGCAGCAAGTCCTGGAGCGCACGGAGCTGAACAAGCTGCCCAAGTCTGTCCAGAACAA
ACTTGAAAAGTTCCTTGCTGATCAGCAATCCGAGATCGATGGCCTGAAGGGGCGGCACGAGAAATTTAAGGTGGAGAGCGAACAACAGTATTTTGAAATAGAAAAGAGGTTGTCTCACAGTCAGGAGA
GACTTGTGAATGAAACCCGGGAGTGTCAAAGCTTGCGGCTTGAGCTAGAGAAACTCAGCAATCAGCTGAAGGCACTAACTGAGAAAAACAAAGAACTTGAAATTGCTCAGGATCGCAATATTGCCATT
CAGAGCCAATTCACAAGAACAAAGGAAGAATTAGAAGCTGAGAAAAGAGACTTAATTAGAACCAATGAGAGACTATCTCAAGAACTTGAATACTCAACAGAGGATGTTAAACGTCTAAATGAAAAACT
TAAAGAAAGCAATACAACAAAGGGTGAACTTCAGTTAAAATTGGATGAACTTCAAGCTTCTGATGTTTCTGTTAAGTATCGAGAAAAACGCTTGGAGCAAGAAAAGGAATTGCTGCATAGTCAGAATA
CATGGCTGAATACAGAGTTGAAAACCAAAACTGATGAACTTCTGGCCCTTGGAAGAGAAAAAGGGAATGAGATTCTAGAGCTTAAATGTAGTCTTGAAAATAAAAAAGAGGAGGTTTCTAGACTGGAA
GAACAAATGAATGGCTTAAAAACATCAAATGAACATCTTCAAAAGCATGTGGAGGATCTGTTGACCAAATTAAAAGAGGCCAAGGAACAACAGGCCAGTATGGAAGAGAAATTCCACAATGAGTTAAA
TGCACACATAAAACTTTCTAACTTGTACAAGAGTGCTGCTGATGACTCAGAAGCAAAGAGCAATGAACTAACCCGGGCAGTGGATGAACTACACAAACTTTTGAAAGAAGCTGGTGAAGCCAACAAAG
CAATACAAGATCATCTTCTAGAGGTGGAGCAATCCAAAGATCAAATGGAAAAAGAAATGCTCGAGAAAATAGGGAAATTGGAGAAGGAATTAGAGAATGTAAATGACCTTCTTTCTGCCACAAAACGT
AAAGGAGCCATATTGTCTGAAGAAGAGCTTGCAGCCATGTCTCCTACTGCAGCAGCTGTAGCTAAGATAGTGAAACCTGGGATGAAACTAACTGAGCTCTATAATGCTTATGTGGAAACTCAGGATCA
GTTGCTTTTGGAGAAACTAGAGAACAAAAGAATTAATAAGTACCTAGATGAAATAGTGAAAGAAGTGGAAGCCAAAGCACCAATTTTGAAACGCCAACGTGAGGAATATGAACGTGCCCAGAAAGCTG
TAGCAAGTTTATCTGTTAAGCTTGAACAAGCTATGAAGGAGATTCAGCGATTGCAGGAGGACACTGATAGAGCCAACAAGCAGTCCTCTGTACTGGAGAGAGATAATCAAAGAATGGAAATACAAATA
AAAGATCTTTCACAACAGATTAGAGTGCTTTTGATGGAACTTGAAGAAGCAAGGGGTAACCACGTAATTCGTGATGAGGAAGTAAGCTCTGCTGATATAAGTAGTTCATCTGAGGTAATATCACAGCA
TCTAGTATCTTACAGAAATATTGAAGAGCTTCAACAACAAAATCAACGTCTGTTAGTGGCCCTTAGAGAGCTTGGGGAAACCAGAGAAAGAGAAGAACAAGAAACAACTTCATCCAAAATCACTGAGC
TTCAGCTCAAACTTGAGAGTGCCCTCACTGAACTAGAACAACTCCGCAAATCACGACAGCATCAAATGCAGCTTGTTGATTCCATAGTTCGTCAGCGTGATATGTACCGTATTTTATTGTCCCAAACA
ACAGGAGTTGCCATTCCATTACATGCTTCAAGCTTAGATGATATTTCTCTTGCATCAACTCCAAAACGTCCAAGTACATCACAGACTGTTTCCACTCCTGCTCCAGTACCTGTTATTGAATCAACAGA
GGCTATAGAGGCTAAGGCTGCCCTTAAACAGTTGCAGGAAATTTTTGAGAACTACAAAAAAGAAAAAGCAGAAAATGAAAAAATACAAAATGAGCAGCTTGAGAAACTTCAAGAACAAGTTACAGATT
TGCGATCACAAAATACCAAAATTTCTACCCAGCTAGATTTTGCTTCGAAACGTTATGAAATGCTGCAAGATAACGTTGAAGGATATCGTCGAGAAATAACATCCCTTCATGAGAGAAATCAGAAACTC
ACTGCCACAACTCAAAAGCAAGAACAGATTATCAATACAATGACTCAAGATTTGAGAGGAGCAAATGAGAAGCTAGCTGTCGCAGAAGTAAGAGCAGAAAATTTGAAGAAGGAAAAAGAAATGCTTAA
ATTGTCTGAAGTTCGTCTTTCTCAGCAAAGGGAGTCTTTGTTAGCTGAACAAAGGGGGCAAAATTTATTGCTAACTAATCTGCAAACAATTCAGGGAATACTGGAGCGATCTGAAACAGAAACCAAAC
AAAGACTTAGTAGCCAGATAGAAAAACTGGAACATGAGATCTCTCATCTAAAGAAGAAGTTGGGAAATGAGGTGGAACAAAGGCATACACTTACTAGAAATCTAGATGTTCAACTTTTAGATACAAAG
AGACAACTGGATACAGAGACAAATCTTCATCTTAACACAAAAGAACTATTTAAAAATGCTCAAAAAGAAATTGCTACATTGAAACAGCACCTCAGTAATATGGAAGTCCAACTTGCTTCTCAGTCTTC
ACAGAGAACTGGTAAAGGTCAGCCTAGCAACAAAGAAGATGTAGATGATCTTGTGAGTCAGCTAAGACAGACAGAAGAGCAGGTGAATGACTTAAAGGAGAGACTCAAAACAAGTACTAGCAATGTGG
AACAATATCGAGCAATGGTTACTAGTTTAGAAGAATCCCTGAACAAGGAAAAGCAGGTGACAGAAGAAGTGCGTAAGAATATTGAAGTTCGTTTAAAAGAGTCAGCTGAGTTTCAGACACAGTTGGAA
AAGAAGTTGATGGAAGTAGAGAAGGAAAAACAAGAACTTCAGGATGATAAAAGAAGAGCCATAGAGAGCATGGAACAACAGTTATCTGAATTGAAAAAAACACTTTCTAGTGTTCAGAATGAAGTACA
AGAAGCTCTTCAGAGAGCAAGCACAGCTTTAAGTAATGAGCAGCAAGCCAGACGTGACTGTCAGGAACAAGCTAAAATAGCTGTGGAAGCTCAGAATAAGTATGAAAGAGAATTGATGCTGCATGCTG
CTGATGTTGAAGCTCTACAAGCTGCGAAGGAGCAGGTTTCAAAAATGGCATCAGTCCGTCAGCATTTGGAAGAAACAACACAGAAAGCAGAATCACAGTTGTTGGAGTGTAAAGCATCTTGGGAGGAA
AGAGAGAGAATGTTAAAGGATGAAGTTTCCAAATGTGTATGTCGCTGTGAAGATCTGGAGAAACAAAACAGATTACTTCATGATCAGATCGAAAAATTAAGTGACAAGGTCGTTGCCTCTGTGAAGGA
AGGTGTACAAGGACCACTGAATGTATCTCTCAGTGAAGAAGGAAAATCTCAAGAACAAATTTTGGAAATTCTCAGATTTATACGACGAGAAAAAGAAATTGCTGAAACTAGGTTTGAGGTGGCTCAGG
TTGAGAGTCTACGTTATCGACAAAGGGTTGAACTTTTAGAAAGAGAGCTGCAGGAACTGCAAGATAGTCTAAATGCTGAAAGGGAGAAAGTCCAGGTAACTGCAAAAACAATGGCTCAGCATGAAGAA
CTGATGAAGAAAACTGAAACAATGAATGTAGTTATGGAGACCAATAAAATGCTAAGAGAAGAAAAGGAGAGACTAGAACAGGATCTACAGCAAATGCAAGCAAAGGTAAGGAAACTGGAGTTAGATAT
TTTACCCTTACAAGAAGCAAATGCTGAGCTGAGTGAGAAAAGCGGTATGTTGCAGGCAGAGAAGAAGCTGTTAGAAGAGGATGTCAAACGTTGGAAAGCACGTAACCAGCATCTAGTAAGTCAACAGA
AAGATCCAGATACAGAAGAATATCGGAAGCTCCTTTCTGAAAAGGAAGTTCATACTAAGCGTATTCAACAGTTGACAGAAGAAATTGGTAGACTTAAAGCTGAAATTGCAAGATCAAATGCATCTTTG
ACTAACAACCAGAACTTAATTCAGAGTCTGAAGGAAGATCTAAATAAAGTAAGAACTGAAAAGGAAACCATCCAGAAGGACTTAGATGCCAAAATAATTGATATCCAAGAAAAAGTCAAAACTATTAC
TCAAGTAAAGAAAATTGGACGTAGGTACAAGACTCAATATGAAGAACTTAAAGCACAACAGGATAAGGTTATGGAGACATCGGCTCAGTCCTCTGGAGATCATCAGGAACAGCATGTTTTAGTCCAGG
AAATGCAGGAACTCAAAGAAACGCTCAACCAAGCTGAAACAAAATCAAAATCACTTGAGAGTCAAGTAGAGAATCTGCAGAAGACATTATCTGAAAAAGAGACAGAAGCAAGAAATCTCCAGGAACAG
ACTGTGCAACTTCAGTCTGAACTTTCACGACTTCGTCAGGATCTTCAAGATAGAACCACACAGGAGGAGCAGCTCCGGCAACAGATAACTGAAAAGGAAGAAAAAACCAGAAAGGCTATTGTAGCAGC
AAAATCAAAAATTGCACACTTAGCTGGTGTAAAAGATCAGCTAACTAAAGAAAATGAGGAGCTTAAACAAAGGAATGGAGCCTTAGATCAGCAGAAAGATGAATTGGATGTTCGTATTACTGCTCTAA
AGTCCCAATATGAAGGTCGAATTAGTCGCTTGGAAAGAGAACTCAGGGAACATCAAGAGAGACACCTTGAGCAGAGAGATGAGCCTCAAGAACCTTCTAATAAGGTCCCTGAACAGCAGAGACAGATC
ACGTTGAAAACAACTCCAGCTTCTGGTGAAAGAGGAATTGCCAGCACCTCAGACCCACCAACAGCCAATATCAAGCCAACTCCTGTTGTGTCTACTCCAAGTAAAGTGACAGCTGCAGCTTTGGCTGG
AAATAAGTCAACACCCAGGGCGAGTATCCGCCCAATGGTTACACCTGCAACTGTTACAAATCCCACTACTACCCCAACAGCTACAGTGATGCCCACTACACAAGTGGAATCACAGGAAGCTATGCAGT
CAGAAGGACCTGTGGAACATGTTCCAGTTTTTGGAAGCACAAGTGGATCCGTTCGTTCTACTAGTCCTAATGTGCAGCCTTCTATCTCTCAACCTATTTTAACTGTTCAGCAACAAACACAGGCTACA
GCTTTTGTGCAACCCACTCAACAAAGTCATCCTCAGATTGAGCCTGTCAATCAGGAGTTATCTTCAAACATAGTAGAGGTTGTTCAAAGTTCACCAGTTGAGCGGCCTTCTACTTCCACAGCAGTATT
TGGCACAGTTTCGGCTACCCCCAGTTCTTCTTTGCCAAAGCGTACACGTGAAGAGGAAGAGGATAGCACCATAGAAGCATCAGACCAAGTCTCTGATGATACAGTGGAAATGCCTCTTCCAAAGAAGT
TGAAAAGCGTTACACCCGTAGGAACTGAGGAAGAAGTTATGGCAGAAGAAAGTACTGATGGAGAGGTGGAGACTCAGGTATACAACCAGGATTCTCAAGATTCCATTGGAGAAGGAGTTACCCAGGGA
GATTATACACCTATGGAAGACAGTGAAGAAACCTCTCAGTCTCTACAAATAGATCTTGGACCACTTCAATCAGATCAGCAAACAACAACTTCATCCCAGGATGGTCAAGGGAAAGGAGATGATGTCAT
TGTAATTGACAGTGATGATGAAGAAGAGGATGATGATGAAAATGATGGAGAACATGAGGATTATGAAGAGGATGAGGAAGACGATGATGATGATGAAGATGACACAGGGATGGGAGACGAGGGTGAAG
ATAGTAATGAAGGAACTGGTAGTGCCGATGGCAATGATGGTTATGAAGCTGATGATGCTGAGGGTGGTGATGGGACTGATCCAGGTACAGAAACAGAAGAAAGTATGGGTGGAGGTGAAGGTAATCAG
AGAGCTGCTGATTCTCAAAACATTGGTGAAGGAAATACAGGTGCTGCAGAATCTTCCTTTTCTCAGGAGGTTTCTAGAGAACAACAGCCATCATCAGCATCTGAAAGACAGGCCCCTCGAGCACCTCA
GTCACCTAGACGCCCACCACATCCACTTCCCCCAAGACTGACCATTCATGCTCCACCTCAGGAGTTGGGACCACCAGTTCAGAGAATTCAGATGACCCGAAGGCAGTCTGTAGGACGTGGGCTTCAGT
TGACTCCAGGAATAGGTGGCATGCAACAGCATTTTTTTGATGATGAAGACAGAACAGTTCCAAGTACTCCAACTCTTGTGGTGCCACATCGTACTGATGGATTTGCTGAAGCAATTCATTCACCACAG
GTTGCTGGTGTCCCTAGATTCCGGTTTGGGCCACCTGAAGATATGCCACAAACAAGTTCTAGTCACTCTGATCTTGGCCAGCTTGCTTCTCAAGGAGGTTTAGGAATGTACGAAACACCCCTGTTCCT
AGCTCATGAAGAAGAGTCAGGTGGCCGAAGTGTTCCCACTACTCCACTACAAGTAGCAGCCCCAGTGACTGTATTTACTGAGAGCACCACCTCTGATGCTTCGGAACATGCCTCTCAATCTGTTCCAA
TGGTGACTACATCCACTGGCACTTTATCTACAACAAATGAAACAGCAACAGGTGATGATGGAGATGAAGTATTTGTGGAGGCAGAATCTGAAGGTATTAGTTCAGAAGCAGGCCTAGAAATTGATAGC
CAGCAGGAAGAAGAGCCGGTTCAAGCATCTGATGAGTCAGATCTCCCCTCCACTAGCCAGGATCCTCCTTCTAGCTCATCTGTAGATACAAGTAGTAGTCAACCAAAGCCTTTCAGACGAGTAAGACT
TCAGACAACATTGAGACAAGGTGTCCGTGGTCGTCAGTTTAACAGACAGAGAGGTGTGAGCCATGCAATGGGAGGGAGAGGAGGAATAAATAGAGGAAATATTAATTAATTGGTCTGTAAACAATAAC
AACTGTGAATAAGATTTTCAAATCTGTTTTAGTGTAATGATTGTCAAGTTTAAAAACATTTTTATATATAAACTGGTATACTCATGTCAATATTCTTTATTAATAAAATGTTTTTCAGTGTCAAAA

hide sequence


Protein RefSeqs	XP_007987347	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000009457
	ENSCSAP00000009457.1

RefSeq Acc Id:	XP_007987347 ⟸ XM_007989156
- UniProtKB:	A0A0D9RLG8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000009457 ⟸ ENSCSAT00000011383

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000013292	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000011383.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.1490	UniProtKB/TrEMBL
InterPro	TPR/MLP1	UniProtKB/TrEMBL
NCBI Gene	TPR	ENTREZGENE
PANTHER	NUCLEOPROTEIN TPR	UniProtKB/TrEMBL
	NUCLEOPROTEIN TPR-RELATED	UniProtKB/TrEMBL
Pfam	TPR_MLP1_2	UniProtKB/TrEMBL
UniProt	A0A0D9RLG8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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