CCDC50 (coiled-coil domain containing 50) - Rat Genome Database

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Gene: CCDC50 (coiled-coil domain containing 50) Chlorocebus sabaeus
Analyze
Symbol: CCDC50
Name: coiled-coil domain containing 50
RGD ID: 18701689
Description: ENCODES a protein that exhibits ubiquitin protein ligase binding (inferred); INVOLVED IN sensory perception of sound (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 44 (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); mantle cell lymphoma (ortholog); FOUND IN microtubule cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 50
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11585,493,894 - 85,563,412 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1585,494,157 - 85,556,827 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604159,143,858 - 59,213,383 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CCDC50
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11585,493,894 - 85,563,412 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1585,494,157 - 85,556,827 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604159,143,858 - 59,213,383 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CCDC50
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383191,329,394 - 191,398,659 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3191,329,085 - 191,398,659 (+)EnsemblGRCh38hg38GRCh38
GRCh373191,047,183 - 191,116,448 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363192,529,568 - 192,592,658 (+)NCBINCBI36Build 36hg18NCBI36
Celera3189,475,666 - 189,545,223 (+)NCBICelera
Cytogenetic Map3q28NCBI
HuRef3188,446,586 - 188,516,222 (+)NCBIHuRef
CHM1_13191,010,492 - 191,080,115 (+)NCBICHM1_1
T2T-CHM13v2.03194,145,445 - 194,207,797 (+)NCBIT2T-CHM13v2.0
Ccdc50
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391627,205,815 - 27,270,968 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1627,207,619 - 27,270,968 (+)EnsemblGRCm39 Ensembl
GRCm381627,387,065 - 27,452,218 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1627,388,869 - 27,452,218 (+)EnsemblGRCm38mm10GRCm38
MGSCv371627,389,063 - 27,452,304 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361627,304,216 - 27,364,056 (+)NCBIMGSCv36mm8
Celera1627,928,087 - 27,983,434 (+)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1618.98NCBI
Ccdc50
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81186,837,624 - 86,900,164 (-)NCBIGRCr8
mRatBN7.21173,332,798 - 73,395,333 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1173,334,248 - 73,395,150 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1182,171,332 - 82,233,630 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01174,806,362 - 74,868,662 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01173,837,406 - 73,899,757 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01176,742,179 - 76,804,695 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1176,747,865 - 76,804,510 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01183,919,936 - 83,982,339 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41175,302,647 - 75,360,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11175,360,235 - 75,418,138 (-)NCBI
Celera1172,269,578 - 72,326,461 (-)NCBICelera
Cytogenetic Map11q22NCBI
Ccdc50
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542016,891,217 - 16,948,008 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542016,884,985 - 16,948,038 (-)NCBIChiLan1.0ChiLan1.0
CCDC50
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22189,268,461 - 189,331,741 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13189,273,295 - 189,342,953 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03188,621,004 - 188,686,831 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13196,968,825 - 197,038,668 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3196,968,817 - 197,031,790 (+)Ensemblpanpan1.1panPan2
CCDC50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13423,168,594 - 23,243,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3423,168,525 - 23,258,497 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3427,277,632 - 27,334,934 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03423,119,939 - 23,177,337 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13423,139,896 - 23,197,198 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03423,126,868 - 23,184,645 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03423,369,224 - 23,426,549 (+)NCBIUU_Cfam_GSD_1.0
Ccdc50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602121,033,853 - 121,101,326 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936900495,547 - 556,316 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936900495,551 - 563,184 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC50
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13128,619,230 - 128,690,649 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113128,619,223 - 128,690,964 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213138,015,014 - 138,130,646 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ccdc50
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473065,882,486 - 65,949,464 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473065,877,175 - 65,949,099 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000007024   ⟹   ENSCSAP00000005220
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1585,494,157 - 85,556,827 (+)Ensembl
RefSeq Acc Id: XM_008009531   ⟹   XP_008007722
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11585,493,894 - 85,563,412 (+)NCBI
Vero_WHO_p1.0NW_02366604159,143,858 - 59,213,383 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008009532   ⟹   XP_008007723
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11585,493,894 - 85,563,412 (+)NCBI
Vero_WHO_p1.0NW_02366604159,143,858 - 59,213,383 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008007722 (Get FASTA)   NCBI Sequence Viewer  
  XP_008007723 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005220.1
RefSeq Acc Id: XP_008007722   ⟸   XM_008009531
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R9D1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008007723   ⟸   XM_008009532
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000005220   ⟸   ENSCSAT00000007024


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008960 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007024.1 UniProtKB/TrEMBL
InterPro CCDC50 UniProtKB/TrEMBL
  CCDC50_N UniProtKB/TrEMBL
KEGG Report csab:103241911 UniProtKB/TrEMBL
NCBI Gene CCDC50 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 50 UniProtKB/TrEMBL
  PTHR22115 UniProtKB/TrEMBL
Pfam CCDC50_N UniProtKB/TrEMBL
UniProt A0A0D9R9D1 ENTREZGENE, UniProtKB/TrEMBL