Ccdc50 (coiled-coil domain containing 50) - Rat Genome Database

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Gene: Ccdc50 (coiled-coil domain containing 50) Mus musculus
Analyze
Symbol: Ccdc50
Name: coiled-coil domain containing 50
RGD ID: 1614360
MGI Page MGI
Description: Predicted to enable ubiquitin protein ligase binding activity. Predicted to act upstream of or within sensory perception of sound. Located in microtubule cytoskeleton. Is expressed in several structures, including brain; cochlear ganglion; gonad; hemolymphoid system gland; and inner ear. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 44 and mantle cell lymphoma. Orthologous to human CCDC50 (coiled-coil domain containing 50).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610529H08Rik; 5730448P06Rik; AW048328; AW546090; C3orf6; coiled-coil domain-containing protein 50; D16Bwg1543e; DNA segment, Chr 16, Brigham & Women's Genetics 1543 expressed; protein Ymer
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Ccdc50-ps  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391627,205,815 - 27,270,968 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1627,207,619 - 27,270,968 (+)EnsemblGRCm39 Ensembl
GRCm381627,387,065 - 27,452,218 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1627,388,869 - 27,452,218 (+)EnsemblGRCm38mm10GRCm38
MGSCv371627,389,063 - 27,452,304 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361627,304,216 - 27,364,056 (+)NCBIMGSCv36mm8
Celera1627,928,087 - 27,983,434 (+)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1618.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Gene knockdown studies revealed CCDC50 as a candidate gene in mantle cell lymphoma and chronic lymphocytic leukemia. Farfsing A, etal., Leukemia. 2009 Nov;23(11):2018-26. doi: 10.1038/leu.2009.144. Epub 2009 Jul 30.
2. A mutation in CCDC50, a gene encoding an effector of epidermal growth factor-mediated cell signaling, causes progressive hearing loss. Modamio-Hoybjor S, etal., Am J Hum Genet. 2007 Jun;80(6):1076-89. Epub 2007 Apr 24.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9371744   PMID:9774969   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12447396   PMID:12466851   PMID:12477932  
PMID:12520002   PMID:14527723   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18069694   PMID:21873635   PMID:24194600   PMID:30333137   PMID:30550785   PMID:31146259  
PMID:32325033   PMID:32554809   PMID:33277610   PMID:34453126   PMID:35620989   PMID:37165931  


Genomics

Comparative Map Data
Ccdc50
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391627,205,815 - 27,270,968 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1627,207,619 - 27,270,968 (+)EnsemblGRCm39 Ensembl
GRCm381627,387,065 - 27,452,218 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1627,388,869 - 27,452,218 (+)EnsemblGRCm38mm10GRCm38
MGSCv371627,389,063 - 27,452,304 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361627,304,216 - 27,364,056 (+)NCBIMGSCv36mm8
Celera1627,928,087 - 27,983,434 (+)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1618.98NCBI
CCDC50
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383191,329,394 - 191,398,659 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3191,329,085 - 191,398,659 (+)EnsemblGRCh38hg38GRCh38
GRCh373191,047,183 - 191,116,448 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363192,529,568 - 192,592,658 (+)NCBINCBI36Build 36hg18NCBI36
Celera3189,475,666 - 189,545,223 (+)NCBICelera
Cytogenetic Map3q28NCBI
HuRef3188,446,586 - 188,516,222 (+)NCBIHuRef
CHM1_13191,010,492 - 191,080,115 (+)NCBICHM1_1
T2T-CHM13v2.03194,145,445 - 194,207,797 (+)NCBIT2T-CHM13v2.0
Ccdc50
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81186,837,624 - 86,900,164 (-)NCBIGRCr8
mRatBN7.21173,332,798 - 73,395,333 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1173,334,248 - 73,395,150 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1182,171,332 - 82,233,630 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01174,806,362 - 74,868,662 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01173,837,406 - 73,899,757 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01176,742,179 - 76,804,695 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1176,747,865 - 76,804,510 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01183,919,936 - 83,982,339 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41175,302,647 - 75,360,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11175,360,235 - 75,418,138 (-)NCBI
Celera1172,269,578 - 72,326,461 (-)NCBICelera
Cytogenetic Map11q22NCBI
Ccdc50
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542016,891,217 - 16,948,008 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542016,884,985 - 16,948,038 (-)NCBIChiLan1.0ChiLan1.0
CCDC50
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22189,268,461 - 189,331,741 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13189,273,295 - 189,342,953 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03188,621,004 - 188,686,831 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13196,968,825 - 197,038,668 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3196,968,817 - 197,031,790 (+)Ensemblpanpan1.1panPan2
CCDC50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13423,168,594 - 23,243,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3423,168,525 - 23,258,497 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3427,277,632 - 27,334,934 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03423,119,939 - 23,177,337 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13423,139,896 - 23,197,198 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03423,126,868 - 23,184,645 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03423,369,224 - 23,426,549 (+)NCBIUU_Cfam_GSD_1.0
Ccdc50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602121,033,853 - 121,101,326 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936900495,547 - 556,316 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936900495,551 - 563,184 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC50
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13128,619,230 - 128,690,649 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113128,619,223 - 128,690,964 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213138,015,014 - 138,130,646 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC50
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11585,493,894 - 85,563,412 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1585,494,157 - 85,556,827 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604159,143,858 - 59,213,383 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc50
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473065,882,486 - 65,949,464 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473065,877,175 - 65,949,099 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc50
2698 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2642
Count of miRNA genes:881
Interacting mature miRNAs:1247
Transcripts:ENSMUST00000039443, ENSMUST00000096127, ENSMUST00000100026, ENSMUST00000143823, ENSMUST00000149077
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
15092062Egrme4_mearly growth rate, maternal effect 4 (mouse)162521866444220250Mouse

Markers in Region
AW048328  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384100,567,939 - 100,568,032UniSTSGRCm38
MGSCv374100,240,544 - 100,240,637UniSTSGRCm37
Celera498,927,931 - 98,928,024UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map16B2UniSTS
cM Map1619.6UniSTS
Whitehead/MRC_RH41407.23UniSTS
AW546090  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381627,451,618 - 27,451,747UniSTSGRCm38
MGSCv371627,451,704 - 27,451,833UniSTSGRCm37
Celera1627,982,834 - 27,982,963UniSTS
Cytogenetic Map16B2UniSTS
cM Map1619.6UniSTS
Whitehead/MRC_RH16239.54UniSTS
AW546233  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381627,422,947 - 27,423,049UniSTSGRCm38
MGSCv371627,423,033 - 27,423,135UniSTSGRCm37
Celera1627,961,956 - 27,962,058UniSTS
Cytogenetic Map16B2UniSTS
cM Map1619.6UniSTS
Whitehead/MRC_RH16232.59UniSTS
RH125076  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381627,451,956 - 27,452,158UniSTSGRCm38
MGSCv371627,452,042 - 27,452,244UniSTSGRCm37
Celera1627,983,172 - 27,983,374UniSTS
Cytogenetic Map16B2UniSTS
cM Map1619.6UniSTS
Ccdc50  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv374100,239,580 - 100,240,655UniSTSGRCm37
Cytogenetic Map16B2UniSTS
cM Map1619.6UniSTS
D16Bwg1543e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381627,451,914 - 27,452,089UniSTSGRCm38
MGSCv371627,452,000 - 27,452,175UniSTSGRCm37
Celera1627,983,130 - 27,983,305UniSTS
Cytogenetic Map16B2UniSTS
cM Map1619.6UniSTS
Ccdc50  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B2UniSTS
Ccdc50  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384100,566,975 - 100,568,050UniSTSGRCm38
MGSCv374100,239,580 - 100,240,655UniSTSGRCm37
Cytogenetic Map16B2UniSTS
Cytogenetic Map4C6UniSTS
Ccdc50  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B2UniSTS
Ccdc50  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B2UniSTS
Ccdc50  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B2UniSTS
Ccdc50  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B2UniSTS
Ccdc50  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B2UniSTS
Ccdc50  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B2UniSTS
Ccdc50  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B2UniSTS
Ccdc50  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B2UniSTS
Ccdc50  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006522483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ534985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE948353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY716501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA319864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD553033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF734428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ045424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX174962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000039443   ⟹   ENSMUSP00000038509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1627,207,730 - 27,258,419 (+)Ensembl
GRCm38.p6 Ensembl1627,388,980 - 27,439,669 (+)Ensembl
RefSeq Acc Id: ENSMUST00000096127   ⟹   ENSMUSP00000093841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1627,207,730 - 27,265,131 (+)Ensembl
GRCm38.p6 Ensembl1627,388,980 - 27,446,381 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100026   ⟹   ENSMUSP00000097604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1627,207,619 - 27,270,968 (+)Ensembl
GRCm38.p6 Ensembl1627,388,869 - 27,452,218 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143823   ⟹   ENSMUSP00000118633
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1627,208,686 - 27,257,099 (+)Ensembl
GRCm38.p6 Ensembl1627,389,936 - 27,438,349 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149077
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1627,208,718 - 27,209,841 (+)Ensembl
GRCm38.p6 Ensembl1627,389,968 - 27,391,091 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239351   ⟹   ENSMUSP00000159204
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1627,207,619 - 27,265,133 (+)Ensembl
GRCm38.p6 Ensembl1627,388,869 - 27,446,383 (+)Ensembl
RefSeq Acc Id: NM_001025615   ⟹   NP_001020786
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391627,207,706 - 27,270,968 (+)NCBI
GRCm381627,388,956 - 27,452,218 (+)NCBI
MGSCv371627,389,063 - 27,452,304 (+)RGD
Celera1627,928,066 - 27,983,434 (+)NCBI
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001289436   ⟹   NP_001276365
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391627,207,706 - 27,270,968 (+)NCBI
GRCm381627,388,956 - 27,452,218 (+)NCBI
Celera1627,928,066 - 27,983,434 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026202   ⟹   NP_080478
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391627,207,706 - 27,270,968 (+)NCBI
GRCm381627,388,956 - 27,452,218 (+)NCBI
MGSCv371627,389,063 - 27,452,304 (+)RGD
Celera1627,928,066 - 27,983,434 (+)NCBI
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006522483   ⟹   XP_006522546
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391627,208,660 - 27,270,968 (+)NCBI
GRCm381627,389,907 - 27,452,218 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011246002   ⟹   XP_011244304
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391627,205,815 - 27,270,968 (+)NCBI
GRCm381627,387,065 - 27,452,218 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249249   ⟹   XP_030105109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391627,208,660 - 27,270,968 (+)NCBI
GRCm381627,389,907 - 27,452,218 (+)NCBI
Sequence:
RefSeq Acc Id: NP_080478   ⟸   NM_026202
- Peptide Label: isoform 1
- UniProtKB: Q9CZT1 (UniProtKB/Swiss-Prot),   Q8BP82 (UniProtKB/Swiss-Prot),   Q3TRW1 (UniProtKB/Swiss-Prot),   A6X929 (UniProtKB/Swiss-Prot),   Q9D436 (UniProtKB/Swiss-Prot),   Q810U5 (UniProtKB/Swiss-Prot),   A6H6M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001020786   ⟸   NM_001025615
- Peptide Label: isoform 2
- UniProtKB: Q3TNK7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006522546   ⟸   XM_006522483
- Peptide Label: isoform X1
- UniProtKB: F6UK66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011244304   ⟸   XM_011246002
- Peptide Label: isoform X3
- UniProtKB: A0A668KL36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276365   ⟸   NM_001289436
- Peptide Label: isoform 3
- UniProtKB: Q810U5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030105109   ⟸   XM_030249249
- Peptide Label: isoform X2
- UniProtKB: F6UK66 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000118633   ⟸   ENSMUST00000143823
RefSeq Acc Id: ENSMUSP00000159204   ⟸   ENSMUST00000239351
RefSeq Acc Id: ENSMUSP00000097604   ⟸   ENSMUST00000100026
RefSeq Acc Id: ENSMUSP00000038509   ⟸   ENSMUST00000039443
RefSeq Acc Id: ENSMUSP00000093841   ⟸   ENSMUST00000096127
Protein Domains
Coiled-coil

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q810U5-F1-model_v2 AlphaFold Q810U5 1-305 view protein structure

Promoters
RGD ID:6826884
Promoter ID:MM_KWN:20640
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6,   Spleen
Transcripts:ENSMUST00000039443,   NM_001025615,   OTTMUST00000057171
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361627,387,991 - 27,389,222 (+)MPROMDB
RGD ID:8685904
Promoter ID:EPDNEW_M20983
Type:initiation region
Name:Ccdc50_1
Description:Mus musculus coiled-coil domain containing 50 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381627,388,993 - 27,389,053EPDNEW
RGD ID:6826886
Promoter ID:MM_KWN:20641
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_2Hour,   MEF_B6
Transcripts:OTTMUST00000057338,   OTTMUST00000057339
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361627,389,291 - 27,390,152 (+)MPROMDB
RGD ID:6826843
Promoter ID:MM_KWN:20642
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:UC007YVQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361627,449,766 - 27,451,817 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914751 AgrOrtholog
Ensembl Genes ENSMUSG00000038127 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000039443.14 UniProtKB/Swiss-Prot
  ENSMUST00000096127 ENTREZGENE
  ENSMUST00000096127.11 UniProtKB/Swiss-Prot
  ENSMUST00000100026 ENTREZGENE
  ENSMUST00000100026.10 UniProtKB/Swiss-Prot
  ENSMUST00000143823.2 UniProtKB/TrEMBL
  ENSMUST00000239351 ENTREZGENE
  ENSMUST00000239351.2 UniProtKB/TrEMBL
InterPro CCDC50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CCDC50_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67501 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1914751 ENTREZGENE
NCBI Gene 67501 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22115 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CCDC50_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccdc50 PhenoGen
UniProt A0A668KL36 ENTREZGENE, UniProtKB/TrEMBL
  A6H6M8 ENTREZGENE, UniProtKB/TrEMBL
  A6X929 ENTREZGENE
  CCD50_MOUSE UniProtKB/Swiss-Prot
  F6UK66 ENTREZGENE, UniProtKB/TrEMBL
  Q3TNK7 ENTREZGENE, UniProtKB/TrEMBL
  Q3TRW1 ENTREZGENE
  Q810U5 ENTREZGENE
  Q8BP82 ENTREZGENE
  Q9CZT1 ENTREZGENE
  Q9D436 ENTREZGENE
UniProt Secondary A6X929 UniProtKB/Swiss-Prot
  Q3TRW1 UniProtKB/Swiss-Prot
  Q8BP82 UniProtKB/Swiss-Prot
  Q9CZT1 UniProtKB/Swiss-Prot
  Q9D436 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Ccdc50  coiled-coil domain containing 50  D16Bwg1543e  DNA segment, Chr 16, Brigham & Women's Genetics 1543 expressed  Data merged from RGD:1609324 737654 PROVISIONAL