LOC103228163 (ropporin-1) - Rat Genome Database

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Gene: LOC103228163 (ropporin-1) Chlorocebus sabaeus
Analyze
Symbol: LOC103228163
Name: ropporin-1
RGD ID: 18692508
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cilium organization (ortholog); flagellated sperm motility (ortholog); protein localization to cilium (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Familial Thoracic Aortic Aneurysm 7 (ortholog); FOUND IN sperm cytoplasmic droplet (ortholog); sperm principal piece (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rhophilin associated tail protein 1; ROPN1; ropporin-1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12256,858,260 - 56,882,208 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236670332,577 - 20,003 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC103228163
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12256,858,260 - 56,882,208 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236670332,577 - 20,003 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ROPN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383123,969,015 - 123,992,124 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3123,968,521 - 123,992,178 (-)EnsemblGRCh38hg38GRCh38
GRCh373123,687,862 - 123,710,971 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363125,170,568 - 125,192,889 (-)NCBINCBI36Build 36hg18NCBI36
Build 343125,170,570 - 125,192,889NCBI
Celera3122,095,418 - 122,117,739 (-)NCBICelera
Cytogenetic Map3q21.1NCBI
HuRef3121,061,722 - 121,084,054 (-)NCBIHuRef
CHM1_13123,650,887 - 123,673,208 (-)NCBICHM1_1
T2T-CHM13v2.03126,695,142 - 126,718,256 (-)NCBIT2T-CHM13v2.0
Ropn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391634,470,271 - 34,498,980 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1634,470,291 - 34,498,988 (+)EnsemblGRCm39 Ensembl
GRCm381634,649,832 - 34,678,610 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1634,649,921 - 34,678,618 (+)EnsemblGRCm38mm10GRCm38
MGSCv371634,651,297 - 34,678,696 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361634,570,958 - 34,598,357 (+)NCBIMGSCv36mm8
Celera1635,118,429 - 35,145,612 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1624.44NCBI
Ropn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81179,603,053 - 79,632,344 (-)NCBIGRCr8
mRatBN7.21166,097,854 - 66,127,148 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1166,097,856 - 66,127,148 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1174,930,920 - 74,960,200 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01167,593,313 - 67,622,593 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01166,623,388 - 66,652,666 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01169,326,785 - 69,355,788 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1169,326,719 - 69,355,854 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01172,417,279 - 72,446,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,915,535 - 67,944,757 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11167,973,123 - 68,002,346 (-)NCBI
Celera1165,552,379 - 65,581,362 (-)NCBICelera
Cytogenetic Map11q22NCBI
Ropn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542723,104,178 - 23,140,559 (-)NCBIChiLan1.0ChiLan1.0
ROPN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22121,930,731 - 121,953,890 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13121,935,507 - 121,958,666 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03121,074,182 - 121,097,320 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13127,973,536 - 127,996,694 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3127,973,536 - 127,996,694 (-)Ensemblpanpan1.1panPan2
ROPN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13327,021,990 - 27,056,675 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3327,043,565 - 27,078,218 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03327,255,519 - 27,290,054 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3327,255,514 - 27,289,879 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13327,051,181 - 27,085,837 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03327,095,524 - 27,130,356 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03327,712,706 - 27,747,409 (-)NCBIUU_Cfam_GSD_1.0
Ropn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602127,329,889 - 127,358,692 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367251,254,973 - 1,267,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ROPN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113136,395,628 - 136,428,170 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213145,913,339 - 145,922,001 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ropn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249122,324,406 - 2,351,181 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249122,324,166 - 2,351,147 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_037996041   ⟹   XP_037851969
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236670332,577 - 20,003 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037851969 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003981.1
RefSeq Acc Id: XP_037851969   ⟸   XM_037996041
- UniProtKB: A0A0D9R5U2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007713 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005763.1 UniProtKB/TrEMBL
Gene3D-CATH cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain UniProtKB/TrEMBL
InterPro ROP_DD UniProtKB/TrEMBL
NCBI Gene ROPN1 ENTREZGENE
PANTHER ROPPORIN-1-LIKE PROTEIN UniProtKB/TrEMBL
  ROPPORIN-1B UniProtKB/TrEMBL
Superfamily-SCOP Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit UniProtKB/TrEMBL
UniProt A0A0D9R5U2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103228163  ropporin-1  ROPN1  rhophilin associated tail protein 1  Symbol and/or name change 5135510 APPROVED