Ropn1 (rhophilin associated tail protein 1)

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Gene: Ropn1 (rhophilin associated tail protein 1) Ictidomys tridecemlineatus

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Symbol:

Ropn1

Name:

rhophilin associated tail protein 1

RGD ID:

12662807

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cilium organization (ortholog); flagellated sperm motility (ortholog); protein localization to cilium (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Familial Thoracic Aortic Aneurysm 7 (ortholog); FOUND IN cytoplasm (inferred); motile cilium (inferred); sperm cytoplasmic droplet (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ropporin-1A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	127,329,889 - 127,358,692 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936725	1,254,973 - 1,267,143 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alkaptonuria (ISO)

familial hypocalciuric hypercalcemia (ISO)

Familial Thoracic Aortic Aneurysm 7 (ISO)

Primary Lymphedema with Myelodysplasia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium organization (IEA,ISO)

flagellated sperm motility (IEA,ISO)

protein localization to cilium (IEA,ISO)

regulation of protein phosphorylation (ISO)

sperm capacitation (IEA,ISO)

Cellular Component

cytoplasm (IEA)

motile cilium (IEA)

sperm cytoplasmic droplet (IEA)

sperm principal piece (IEA)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

References

Genomics

Comparative Map Data

Ropn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	127,329,889 - 127,358,692 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936725	1,254,973 - 1,267,143 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ROPN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	123,969,015 - 123,992,124 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	123,968,521 - 123,992,178 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	123,687,862 - 123,710,971 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	125,170,568 - 125,192,889 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	125,170,570 - 125,192,889	NCBI
Celera	3	122,095,418 - 122,117,739 (-)	NCBI		Celera
Cytogenetic Map	3	q21.1	NCBI
HuRef	3	121,061,722 - 121,084,054 (-)	NCBI		HuRef
CHM1_1	3	123,650,887 - 123,673,208 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	126,695,142 - 126,718,256 (-)	NCBI		T2T-CHM13v2.0

Ropn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	34,470,271 - 34,498,980 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	34,470,291 - 34,498,988 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	34,649,832 - 34,678,610 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	34,649,921 - 34,678,618 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	34,651,297 - 34,678,696 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	34,570,958 - 34,598,357 (+)	NCBI		MGSCv36	mm8
Celera	16	35,118,429 - 35,145,612 (+)	NCBI		Celera
Cytogenetic Map	16	B3	NCBI
cM Map	16	24.44	NCBI

Ropn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	79,603,053 - 79,632,344 (-)	NCBI		GRCr8
mRatBN7.2	11	66,097,854 - 66,127,148 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	66,097,856 - 66,127,148 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	74,930,920 - 74,960,200 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	67,593,313 - 67,622,593 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	66,623,388 - 66,652,666 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	69,326,785 - 69,355,788 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	69,326,719 - 69,355,854 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	72,417,279 - 72,446,282 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	67,915,535 - 67,944,757 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	67,973,123 - 68,002,346 (-)	NCBI
Celera	11	65,552,379 - 65,581,362 (-)	NCBI		Celera
Cytogenetic Map	11	q22	NCBI

Ropn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955427	23,104,178 - 23,140,559 (-)	NCBI	ChiLan1.0	ChiLan1.0

ROPN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	121,930,731 - 121,953,890 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	121,935,507 - 121,958,666 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	121,074,182 - 121,097,320 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	127,973,536 - 127,996,694 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	127,973,536 - 127,996,694 (-)	Ensembl	panpan1.1		panPan2

ROPN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	27,021,990 - 27,056,675 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	27,043,565 - 27,078,218 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	27,255,519 - 27,290,054 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	27,255,514 - 27,289,879 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	27,051,181 - 27,085,837 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	27,095,524 - 27,130,356 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	27,712,706 - 27,747,409 (-)	NCBI		UU_Cfam_GSD_1.0

ROPN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	13	136,395,628 - 136,428,170 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	145,913,339 - 145,922,001 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103228163
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	56,858,260 - 56,882,208 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023667033	2,577 - 20,003 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ropn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624912	2,324,406 - 2,351,181 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624912	2,324,166 - 2,351,147 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005338879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005338879 ⟹ XP_005338936

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	127,329,889 - 127,358,692 (+)	NCBI
SpeTri2.0	NW_004936725	1,254,973 - 1,267,143 (+)	NCBI

Sequence:

show sequence

GAGGCTGGGTGACCTCTAGCTCAGGATTGCTGTCATCTTATGATTCAAAGATTCCCATTTTATT
TTCTCTCCTGTGCACAGGTCAAGCAATCAATGCCTCAGACTGATAAGCAAATATGCATCCCGCC
CGAGCTGCCAGAATTGCTGAAGCAGTTTACCAAAGCCGCCATCCGGACCCAGCCCCAGGATCTC
ATCCAATGGGCTGCCGATTATTTTGGGTCTATGTCCCGTGGAGAGATCCCTCCAGTGAGAGAGC
GGTCTGAGCGAGTTGCTTTGTCCAACTGGGCGGAGCTCACACCTGAGCTGTTAAAGATCCTGCA
TTCTCGGGTTGGTGGCAGGCTGATCATCCATGCAGATGAACTGGCTCAGATGTGGAAGGTGTTG
AATCTGCCAACAGATCTGTTTAATAGTGTGATGAACGTGGGTCGTTTCACAGAGGAGATCGAAT
GGCTGAAGTTCTTAGCCCTTTCCTGCAGCTCTCTTGGAGTTACCATTGCCAAAACTCTTAAGAT
AGTGTGTGAAGTTTTGTCCAGTGACCATGATGGTGGACCTCCACGGATCCCTTTCAGCACCTTC
CAGTTTCTCTACACATATATTGCTGAAGTGGACGGAGAAATCTCTGCATCCCATGTCAGCAGAA
TGCTAAACTACATTGAACAGGAAGTAATTGGTCCTGATGGTTTAATCAAGGTGAATGACTTTAC
CCAAAATCCCAGGGTTCGGCTGGAATAAAAACACGGTTTTGGCAATTTTAAAGGAAGATACAGA
GATGATTGTACTTCGCAATGGCTTAACCCCATACACCATCCAAAGTCAATTTTCTTGTGCAACT
GGTACACACAAATAAACAATTAGACAAACGTATGAAATTAGAA

hide sequence

RefSeq Acc Id:

XM_040270262 ⟹ XP_040126196

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	127,329,889 - 127,358,692 (+)	NCBI

RefSeq Acc Id:

XM_040270263 ⟹ XP_040126197

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	127,329,889 - 127,358,692 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005338936	(Get FASTA)	NCBI Sequence Viewer
	XP_040126196	(Get FASTA)	NCBI Sequence Viewer
	XP_040126197	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003793.2
GenBank Protein	KAG3271316	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005338936 ⟸ XM_005338879
- Peptide Label:	isoform X2
- UniProtKB:	I3M3U7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIQRFPFYFLSCAQVKQSMPQTDKQICIPPELPELLKQFTKAAIRTQPQDLIQWAADYFGSMSR GEIPPVRERSERVALSNWAELTPELLKILHSRVGGRLIIHADELAQMWKVLNLPTDLFNSVMNV GRFTEEIEWLKFLALSCSSLGVTIAKTLKIVCEVLSSDHDGGPPRIPFSTFQFLYTYIAEVDGE ISASHVSRMLNYIEQEVIGPDGLIKVNDFTQNPRVRLE hide sequence

RefSeq Acc Id:	XP_040126197 ⟸ XM_040270263
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040126196 ⟸ XM_040270262
- Peptide Label:	isoform X1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000004225	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000004224.3	UniProtKB/TrEMBL
Gene3D-CATH	cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain	UniProtKB/TrEMBL
InterPro	ROP_DD	UniProtKB/TrEMBL
NCBI Gene	Ropn1	ENTREZGENE
PANTHER	ROPPORIN-1-LIKE PROTEIN	UniProtKB/TrEMBL
	ROPPORIN-1B	UniProtKB/TrEMBL
Superfamily-SCOP	Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit	UniProtKB/TrEMBL
UniProt	I3M3U7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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