ROPN1 (rhophilin associated tail protein 1) - Rat Genome Database

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Gene: ROPN1 (rhophilin associated tail protein 1) Pan paniscus
Analyze
Symbol: ROPN1
Name: rhophilin associated tail protein 1
RGD ID: 11788539
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN cilium organization (ortholog); flagellated sperm motility (ortholog); protein localization to cilium (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Familial Thoracic Aortic Aneurysm 7 (ortholog); FOUND IN sperm cytoplasmic droplet (ortholog); sperm principal piece (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ropporin-1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22121,930,731 - 121,953,890 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13121,935,507 - 121,958,666 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03121,074,182 - 121,097,320 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13127,973,536 - 127,996,694 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3127,973,536 - 127,996,694 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ROPN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22121,930,731 - 121,953,890 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13121,935,507 - 121,958,666 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03121,074,182 - 121,097,320 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13127,973,536 - 127,996,694 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3127,973,536 - 127,996,694 (-)Ensemblpanpan1.1panPan2
ROPN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383123,969,015 - 123,992,124 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3123,968,521 - 123,992,178 (-)EnsemblGRCh38hg38GRCh38
GRCh373123,687,862 - 123,710,971 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363125,170,568 - 125,192,889 (-)NCBINCBI36Build 36hg18NCBI36
Build 343125,170,570 - 125,192,889NCBI
Celera3122,095,418 - 122,117,739 (-)NCBICelera
Cytogenetic Map3q21.1NCBI
HuRef3121,061,722 - 121,084,054 (-)NCBIHuRef
CHM1_13123,650,887 - 123,673,208 (-)NCBICHM1_1
T2T-CHM13v2.03126,695,142 - 126,718,256 (-)NCBIT2T-CHM13v2.0
Ropn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391634,470,271 - 34,498,980 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1634,470,291 - 34,498,988 (+)EnsemblGRCm39 Ensembl
GRCm381634,649,832 - 34,678,610 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1634,649,921 - 34,678,618 (+)EnsemblGRCm38mm10GRCm38
MGSCv371634,651,297 - 34,678,696 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361634,570,958 - 34,598,357 (+)NCBIMGSCv36mm8
Celera1635,118,429 - 35,145,612 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1624.44NCBI
Ropn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81179,603,053 - 79,632,344 (-)NCBIGRCr8
mRatBN7.21166,097,854 - 66,127,148 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1166,097,856 - 66,127,148 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1174,930,920 - 74,960,200 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01167,593,313 - 67,622,593 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01166,623,388 - 66,652,666 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01169,326,785 - 69,355,788 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1169,326,719 - 69,355,854 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01172,417,279 - 72,446,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,915,535 - 67,944,757 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11167,973,123 - 68,002,346 (-)NCBI
Celera1165,552,379 - 65,581,362 (-)NCBICelera
Cytogenetic Map11q22NCBI
Ropn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542723,104,178 - 23,140,559 (-)NCBIChiLan1.0ChiLan1.0
ROPN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13327,021,990 - 27,056,675 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3327,043,565 - 27,078,218 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03327,255,519 - 27,290,054 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3327,255,514 - 27,289,879 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13327,051,181 - 27,085,837 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03327,095,524 - 27,130,356 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03327,712,706 - 27,747,409 (-)NCBIUU_Cfam_GSD_1.0
Ropn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602127,329,889 - 127,358,692 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367251,254,973 - 1,267,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ROPN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113136,395,628 - 136,428,170 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213145,913,339 - 145,922,001 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103228163
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12256,858,260 - 56,882,208 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236670332,577 - 20,003 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ropn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249122,324,406 - 2,351,181 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249122,324,166 - 2,351,147 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000045461   ⟹   ENSPPAP00000022650
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3127,973,536 - 127,996,694 (-)Ensembl
RefSeq Acc Id: XM_008950520   ⟹   XP_008948768
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22121,930,731 - 121,953,890 (-)NCBI
NHGRI_mPanPan13121,935,507 - 121,958,666 (-)NCBI
Mhudiblu_PPA_v03121,074,196 - 121,097,320 (-)NCBI
PanPan1.13127,973,536 - 127,996,500 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055110360   ⟹   XP_054966335
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22121,930,731 - 121,953,890 (-)NCBI
NHGRI_mPanPan13121,935,507 - 121,958,666 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008948768 (Get FASTA)   NCBI Sequence Viewer  
  XP_054966335 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000022650.1
Reference Protein Sequences
RefSeq Acc Id: XP_008948768   ⟸   XM_008950520
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSPPAP00000022650   ⟸   ENSPPAT00000045461
RefSeq Acc Id: XP_054966335   ⟸   XM_055110360
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AZJ8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034510 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045461.1 UniProtKB/TrEMBL
Gene3D-CATH cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain UniProtKB/TrEMBL
InterPro ROP_DD UniProtKB/TrEMBL
KEGG Report pps:100990673 UniProtKB/TrEMBL
NCBI Gene ROPN1 ENTREZGENE
PANTHER ROPPORIN-1-LIKE PROTEIN UniProtKB/TrEMBL
  ROPPORIN-1A UniProtKB/TrEMBL
Superfamily-SCOP Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit UniProtKB/TrEMBL
UniProt A0A2R9AZJ8 ENTREZGENE, UniProtKB/TrEMBL