MARVELD3 (MARVEL domain containing 3) - Rat Genome Database

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Gene: MARVELD3 (MARVEL domain containing 3) Chlorocebus sabaeus
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Symbol: MARVELD3
Name: MARVEL domain containing 3
RGD ID: 18686752
Description: ENCODES a protein that exhibits mitogen-activated protein kinase kinase kinase binding (inferred); structural constituent of myelin sheath (inferred); INVOLVED IN bicellular tight junction assembly (inferred); cell-cell junction organization (inferred); myelination (inferred); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); FOUND IN bicellular tight junction (inferred); cytoplasmic vesicle (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MARVEL domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1554,748,029 - 54,765,007 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl554,748,061 - 54,765,252 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604717,551,303 - 17,567,015 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARVELD3Green Monkeyautosomal dominant dyskeratosis congenita 6  ISORGD:13471218554872ClinVar Annotator: match by term: Dyskeratosis congenita, autosomal dominant 6ClinVarPMID:28492532


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARVELD3Green Monkeybicellular tight junction assembly involved_inIEAUniProtKB:Q96A59|ensembl:ENSP00000268485150520179 EnsemblGO_REF:0000107
MARVELD3Green Monkeycell-cell junction organization acts_upstream_of_or_withinIEAUniProtKB:Q96A59|ensembl:ENSP00000268485150520179 EnsemblGO_REF:0000107
MARVELD3Green Monkeymyelination involved_inIEAPANTHER:PTN000497537150520179 TreeGrafterGO_REF:0000118
MARVELD3Green Monkeynegative regulation of epithelial cell migration acts_upstream_of_or_withinIEAUniProtKB:Q96A59|ensembl:ENSP00000268485150520179 EnsemblGO_REF:0000107
MARVELD3Green Monkeynegative regulation of epithelial cell proliferation acts_upstream_of_or_withinIEAUniProtKB:Q96A59|ensembl:ENSP00000268485150520179 EnsemblGO_REF:0000107
MARVELD3Green Monkeynegative regulation of JNK cascade acts_upstream_of_or_withinIEAUniProtKB:Q96A59|ensembl:ENSP00000268485150520179 EnsemblGO_REF:0000107
MARVELD3Green Monkeyprotein localization to cell junction acts_upstream_of_or_withinIEAUniProtKB:Q96A59|ensembl:ENSP00000268485150520179 EnsemblGO_REF:0000107
MARVELD3Green Monkeyresponse to osmotic stress acts_upstream_of_or_withinIEAUniProtKB:Q96A59|ensembl:ENSP00000268485150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARVELD3Green Monkeybicellular tight junction located_inIEAUniProtKB:Q96A59|ensembl:ENSP00000268485150520179 EnsemblGO_REF:0000107
MARVELD3Green Monkeycytoplasmic vesicle located_inIEAUniProtKB:Q96A59|ensembl:ENSP00000268485150520179 EnsemblGO_REF:0000107
MARVELD3Green Monkeymembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
MARVELD3Green Monkeymembrane located_inIEAPANTHER:PTN000497537150520179 TreeGrafterGO_REF:0000118
MARVELD3Green Monkeymembrane located_inIEAUniRule:UR000413253150520179 UniProtGO_REF:0000104
MARVELD3Green Monkeymembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
MARVELD3Green Monkeymembrane located_inIEAInterPro:IPR008253150520179 InterProGO_REF:0000002

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARVELD3Green Monkeymitogen-activated protein kinase kinase kinase binding enablesIEAUniProtKB:Q96A59|ensembl:ENSP00000268485150520179 EnsemblGO_REF:0000107
MARVELD3Green Monkeyprotein binding enablesISOUniProtKB:Q8N4S99068941 PMID:20164257UniProtPMID:20164257
MARVELD3Green Monkeystructural constituent of myelin sheath enablesIEAPANTHER:PTN000497537150520179 TreeGrafterGO_REF:0000118

PMID:22301074  



MARVELD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1554,748,029 - 54,765,007 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl554,748,061 - 54,765,252 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604717,551,303 - 17,567,015 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MARVELD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381671,626,184 - 71,641,965 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1671,626,161 - 71,642,114 (+)EnsemblGRCh38hg38GRCh38
GRCh371671,660,087 - 71,675,868 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361670,217,571 - 70,233,369 (+)NCBINCBI36Build 36hg18NCBI36
Build 341670,217,589 - 70,226,732NCBI
Celera1655,976,129 - 55,991,929 (+)NCBICelera
Cytogenetic Map16q22.2NCBI
HuRef1657,428,132 - 57,443,707 (+)NCBIHuRef
CHM1_11673,072,839 - 73,088,630 (+)NCBICHM1_1
T2T-CHM13v2.01677,443,349 - 77,459,129 (+)NCBIT2T-CHM13v2.0
Marveld3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398110,674,541 - 110,688,837 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8110,674,546 - 110,688,835 (-)EnsemblGRCm39 Ensembl
GRCm388109,947,909 - 109,962,205 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8109,947,914 - 109,962,203 (-)EnsemblGRCm38mm10GRCm38
MGSCv378112,471,809 - 112,486,105 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368112,837,043 - 112,851,301 (-)NCBIMGSCv36mm8
Celera8114,169,861 - 114,184,142 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map857.38NCBI
Marveld3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81954,818,180 - 54,832,871 (-)NCBIGRCr8
mRatBN7.21937,908,727 - 37,923,420 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1937,905,638 - 37,923,420 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1944,721,040 - 44,735,720 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01945,374,382 - 45,389,062 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01947,683,994 - 47,698,676 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01941,710,076 - 41,724,923 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1941,710,102 - 41,724,923 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01952,533,493 - 52,548,323 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41939,815,223 - 39,829,914 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1937,312,319 - 37,327,013 (-)NCBICelera
Cytogenetic Map19q12NCBI
MARVELD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21882,517,624 - 82,533,582 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11688,448,452 - 88,464,397 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01653,369,080 - 53,385,031 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11671,463,722 - 71,477,951 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1671,463,824 - 71,477,631 (+)Ensemblpanpan1.1panPan2
MARVELD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1577,412,353 - 77,421,032 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl577,412,101 - 77,425,578 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha577,373,388 - 77,388,132 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0577,850,906 - 77,865,672 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1577,670,919 - 77,685,750 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0577,494,107 - 77,508,903 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0577,993,065 - 78,007,828 (+)NCBIUU_Cfam_GSD_1.0
Marveld3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934937,432,404 - 37,450,390 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647522,146,100 - 22,156,702 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647522,141,276 - 22,156,649 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MARVELD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl614,616,481 - 14,625,983 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1614,616,508 - 14,630,798 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2614,109,585 - 14,123,646 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Marveld3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474613,898,857 - 13,914,032 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in MARVELD3
271 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
60 20 18 18 18 60 20


RefSeq Transcripts XM_007993720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007993722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JBLKOC010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000002304   ⟹   ENSCSAP00000000626
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl554,748,061 - 54,765,252 (+)Ensembl
RefSeq Acc Id: XM_007993720   ⟹   XP_007991911
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1554,748,133 - 54,758,512 (+)NCBI
Vero_WHO_p1.0NW_02366604717,551,303 - 17,560,097 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007993722   ⟹   XP_007991913
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1554,748,029 - 54,765,007 (+)NCBI
Vero_WHO_p1.0NW_02366604717,551,303 - 17,567,015 (+)NCBI
Sequence:
Protein RefSeqs XP_007991911 (Get FASTA)   NCBI Sequence Viewer  
  XP_007991913 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000626.1
RefSeq Acc Id: XP_007991913   ⟸   XM_007993722
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007991911   ⟸   XM_007993720
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000000626   ⟸   ENSCSAT00000002304



1 to 9 of 9 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000004274 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002304.1 UniProtKB/TrEMBL
InterPro Marvel UniProtKB/TrEMBL
  MARVEL-CKLF_proteins UniProtKB/TrEMBL
NCBI Gene MARVELD3 ENTREZGENE
PANTHER MARVEL DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN UniProtKB/TrEMBL
PROSITE MARVEL UniProtKB/TrEMBL
UniProt A0A0D9QW87_CHLSB UniProtKB/TrEMBL
1 to 9 of 9 rows