RAB31 (RAB31, member RAS oncogene family) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RAB31 (RAB31, member RAS oncogene family) Chlorocebus sabaeus
Analyze
Symbol: RAB31
Name: RAB31, member RAS oncogene family
RGD ID: 18673016
Description: ENCODES a protein that exhibits GDP binding (inferred); GTP binding (inferred); GTPase activity (inferred); INVOLVED IN Golgi vesicle transport (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); dystonia (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN late endosome (ortholog); trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-31
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11868,583,178 - 68,736,182 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1868,583,259 - 68,736,771 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605043,536,070 - 43,688,505 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
RAB31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11868,583,178 - 68,736,182 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1868,583,259 - 68,736,771 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605043,536,070 - 43,688,505 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RAB31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38189,708,301 - 9,862,551 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl189,708,275 - 9,862,551 (+)EnsemblGRCh38hg38GRCh38
GRCh37189,708,298 - 9,862,548 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,765,274 - 9,852,548 (+)NCBINCBI36Build 36hg18NCBI36
Build 34189,698,302 - 9,852,547NCBI
Celera189,592,158 - 9,746,168 (+)NCBICelera
Cytogenetic Map18p11.22NCBI
HuRef189,670,154 - 9,824,845 (+)NCBIHuRef
CHM1_1189,707,467 - 9,861,823 (+)NCBICHM1_1
T2T-CHM13v2.0189,871,688 - 10,026,019 (+)NCBIT2T-CHM13v2.0
Rab31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391765,958,721 - 66,079,747 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1765,958,724 - 66,079,747 (-)EnsemblGRCm39 Ensembl
GRCm381765,651,726 - 65,772,752 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1765,651,729 - 65,772,752 (-)EnsemblGRCm38mm10GRCm38
MGSCv371766,001,066 - 66,122,092 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361765,551,272 - 65,672,224 (-)NCBIMGSCv36mm8
Celera1769,955,123 - 70,076,119 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1735.03NCBI
Rab31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89112,693,596 - 112,828,104 (-)NCBIGRCr8
mRatBN7.29105,246,712 - 105,382,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,246,709 - 105,381,253 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9113,655,680 - 113,787,479 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09118,767,100 - 118,894,913 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09117,121,634 - 117,253,437 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09113,370,072 - 113,504,606 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,370,033 - 113,504,605 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09112,902,312 - 113,037,023 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,408,546 - 104,543,084 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19104,620,581 - 104,752,513 (-)NCBI
Celera9102,633,277 - 102,759,642 (-)NCBICelera
Cytogenetic Map9q37NCBI
Rab31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554022,354,646 - 2,446,453 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554022,354,399 - 2,446,537 (-)NCBIChiLan1.0ChiLan1.0
RAB31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21728,588,767 - 28,742,636 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11814,281,361 - 14,435,218 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0184,424,677 - 4,578,263 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1186,706,960 - 6,793,147 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl186,710,174 - 6,859,896 (-)Ensemblpanpan1.1panPan2
RAB31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1775,678,896 - 75,807,716 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl775,678,908 - 75,817,426 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha775,076,498 - 75,205,288 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0775,739,452 - 75,868,183 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl775,739,099 - 75,868,181 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1775,437,794 - 75,566,545 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0775,455,552 - 75,584,138 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0775,764,955 - 75,893,623 (+)NCBIUU_Cfam_GSD_1.0
Rab31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049442,398,635 - 2,476,693 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366261,628,451 - 1,660,510 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366261,628,379 - 1,673,150 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl698,278,647 - 98,385,795 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1698,278,644 - 98,385,857 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2691,609,428 - 91,647,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rab31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477018,285,132 - 18,372,650 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477018,285,140 - 18,372,389 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007974664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000015648   ⟹   ENSCSAP00000013581
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1868,583,259 - 68,736,771 (+)Ensembl
RefSeq Acc Id: XM_007974664   ⟹   XP_007972855
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11868,583,178 - 68,736,182 (+)NCBI
Vero_WHO_p1.0NW_02366605043,536,070 - 43,688,505 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007972855 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013581
  ENSCSAP00000013581.1
RefSeq Acc Id: XP_007972855   ⟸   XM_007974664
- UniProtKB: A0A0D9RY92 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000013581   ⟸   ENSCSAT00000015648


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017553 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015648.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report csab:103222763 UniProtKB/TrEMBL
NCBI Gene RAB31 ENTREZGENE
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-31 ISOFORM X1 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9RY92 ENTREZGENE, UniProtKB/TrEMBL