LOC103245347 (golgin subfamily A member 6C) - Rat Genome Database

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Pathways
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Gene: LOC103245347 (golgin subfamily A member 6C) Chlorocebus sabaeus
Analyze
Symbol: LOC103245347
Name: golgin subfamily A member 6C
RGD ID: 18671362
Description: INVOLVED IN Golgi organization (inferred); spindle assembly (inferred); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cis-Golgi network (inferred); Golgi apparatus (inferred); Golgi cis cisterna (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GOLGA6A; golgin A6 family member A; golgin subfamily A member 6A
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1269,399,054 - 9,420,493 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048132,197,199 - 132,208,721 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC103245347
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1269,399,054 - 9,420,493 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048132,197,199 - 132,208,721 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GOLGA6A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381574,069,857 - 74,082,550 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1574,069,857 - 74,082,550 (-)EnsemblGRCh38hg38GRCh38
GRCh371574,362,198 - 74,374,891 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361572,149,251 - 72,161,944 (-)NCBINCBI36Build 36hg18NCBI36
Celera1552,501,616 - 52,514,310 (+)NCBICelera
Cytogenetic Map15q24.1NCBI
CHM1_11574,480,151 - 74,492,882 (-)NCBICHM1_1
T2T-CHM13v2.01571,887,216 - 71,899,900 (-)NCBIT2T-CHM13v2.0


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 23 13 30
Below cutoff 13 5 30

Sequence


Reference Sequences
RefSeq Acc Id: XM_038010296   ⟹   XP_037866224
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048132,197,199 - 132,208,721 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037866224 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010247.1
Reference Protein Sequences
RefSeq Acc Id: XP_037866224   ⟸   XM_038010296


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014123 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012203.1 UniProtKB/TrEMBL
InterPro GOLGA_cons_dom UniProtKB/TrEMBL
  Golgin_A UniProtKB/TrEMBL
NCBI Gene GOLGA6A ENTREZGENE
PANTHER GOLGIN SUBFAMILY A MEMBER 6A-RELATED UniProtKB/TrEMBL
  PTHR10881 UniProtKB/TrEMBL
Pfam GOLGA2L5 UniProtKB/TrEMBL
UniProt A0A0D9RNQ8_CHLSB UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103245347  golgin subfamily A member 6C  GOLGA6A  golgin A6 family member A  Symbol and/or name change 5135510 APPROVED