GOLGA6A (golgin A6 family member A)

Gene: GOLGA6A (golgin A6 family member A) Homo sapiens

Analyze

Symbol:

GOLGA6A

Name:

golgin A6 family member A

RGD ID:

1606654

HGNC Page

HGNC:13567

Description:

Predicted to be involved in Golgi organization. Predicted to be located in Golgi apparatus. Predicted to be active in Golgi cis cisterna; Golgi cisterna membrane; and cis-Golgi network.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

FLJ75859; GLP; GOLGA6; golgi autoantigen, golgin subfamily a, 6; golgi autoantigen, golgin subfamily a, 6A; golgi autoantigen, golgin subfamily a, member 6; golgin A6 family, member A; Golgin linked to PML; Golgin subfamily A member 6A; golgin-like protein

RGD Orthologs

Green Monkey

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Chlorocebus sabaeus (green monkey):	LOC103245347 (golgin subfamily A member 6C)	NCBI	Ortholog
Other homologs ²
Mus musculus (house mouse):	Golga2 (golgin A2)	HGNC	Ensembl, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Golga2 (golgin A2)	HGNC	Panther, PhylomeDB
Alliance orthologs ³
Caenorhabditis elegans (roundworm):	golg-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER)
Drosophila melanogaster (fruit fly):	GM130	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	golga2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Related Pseudogenes:

AC100827.2 GOLGA2P6 GOLGA6FP

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	74,069,857 - 74,082,550 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	74,069,857 - 74,082,550 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	74,362,198 - 74,374,891 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	72,149,251 - 72,161,944 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	52,501,616 - 52,514,310 (+)	NCBI		Celera
Cytogenetic Map	15	q24.1	NCBI
CHM1_1	15	74,480,151 - 74,492,882 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	71,887,216 - 71,899,900 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (IAGP)

Bloom syndrome (IAGP)

colorectal cancer (IAGP)

genetic disease (IAGP)

schizophrenia (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

aflatoxin B1 (EXP)

Aflatoxin B2 alpha (EXP)

aristolochic acid A (EXP)

benzo[a]pyrene (EXP)

benzo[e]pyrene (EXP)

bis(2-ethylhexyl) phthalate (EXP)

methapyrilene (EXP)

methylmercury chloride (EXP)

Theaflavin 3,3'-digallate (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Golgi organization (IBA,IEA)

spindle assembly (IEA)

Cellular Component

cis-Golgi network (IBA,IEA)

Golgi apparatus (IEA)

Golgi cis cisterna (IBA,IEA)

Golgi cisterna membrane (IBA,IEA)

Molecular Function

protein binding (IPI)

Phenotype Annotations Click to see Annotation Detail View

Human Phenotype

Schizophrenia (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11156619	PMID:11161787	PMID:11509185	PMID:11896453	PMID:12477932	PMID:12915487	PMID:16344560	PMID:21873635	PMID:26496610	PMID:32296183	PMID:33961781	PMID:34373451
PMID:35563538

Genomics

Comparative Map Data

GOLGA6A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	74,069,857 - 74,082,550 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	74,069,857 - 74,082,550 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	74,362,198 - 74,374,891 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	72,149,251 - 72,161,944 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	52,501,616 - 52,514,310 (+)	NCBI		Celera
Cytogenetic Map	15	q24.1	NCBI
CHM1_1	15	74,480,151 - 74,492,882 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	71,887,216 - 71,899,900 (-)	NCBI		T2T-CHM13v2.0

LOC103245347
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	9,399,054 - 9,420,493 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	132,197,199 - 132,208,721 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in GOLGA6A
25 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 15q24.1-24.2(chr15:72671629-75662276)x1	copy number loss	See cases [RCV000051128]	Chr15:72671629..75662276 [GRCh38] Chr15:72963970..75954617 [GRCh37] Chr15:70751023..73741672 [NCBI36] Chr15:15q24.1-24.2	pathogenic
GRCh38/hg38 15q24.1-24.2(chr15:72629028-75242989)x3	copy number gain	See cases [RCV000051821]	Chr15:72629028..75242989 [GRCh38] Chr15:72921369..75535330 [GRCh37] Chr15:70708423..73322383 [NCBI36] Chr15:15q24.1-24.2	pathogenic
GRCh38/hg38 15q23-24.2(chr15:70788624-76057736)x1	copy number loss	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053219]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053219]\|See cases [RCV000053219]	Chr15:70788624..76057736 [GRCh38] Chr15:71080963..76350077 [GRCh37] Chr15:68868017..74137132 [NCBI36] Chr15:15q23-24.2	pathogenic
GRCh38/hg38 15q24.1-24.2(chr15:72671629-75199803)x1	copy number loss	See cases [RCV000137347]	Chr15:72671629..75199803 [GRCh38] Chr15:72963970..75492144 [GRCh37] Chr15:70751023..73279197 [NCBI36] Chr15:15q24.1-24.2	likely pathogenic\|likely benign
GRCh38/hg38 15q23-25.1(chr15:70025300-78705993)x1	copy number loss	See cases [RCV000141666]	Chr15:70025300..78705993 [GRCh38] Chr15:70317639..78998335 [GRCh37] Chr15:68104693..76785390 [NCBI36] Chr15:15q23-25.1	pathogenic
GRCh38/hg38 15q24.1-24.2(chr15:72685231-75727625)x1	copy number loss	See cases [RCV000141573]	Chr15:72685231..75727625 [GRCh38] Chr15:72977572..76019966 [GRCh37] Chr15:70764625..73807021 [NCBI36] Chr15:15q24.1-24.2	pathogenic
GRCh38/hg38 15q23-26.3(chr15:72154949-101920998)x3	copy number gain	See cases [RCV000143019]	Chr15:72154949..101920998 [GRCh38] Chr15:72447290..102461201 [GRCh37] Chr15:70234344..100278724 [NCBI36] Chr15:15q23-26.3	pathogenic
GRCh38/hg38 15q22.2-26.3(chr15:59828460-101920998)x3	copy number gain	See cases [RCV000142915]	Chr15:59828460..101920998 [GRCh38] Chr15:60120659..102461201 [GRCh37] Chr15:57907951..100278724 [NCBI36] Chr15:15q22.2-26.3	pathogenic
GRCh38/hg38 15q24.1-24.2(chr15:72671629-75242989)x1	copy number loss	See cases [RCV000142748]	Chr15:72671629..75242989 [GRCh38] Chr15:72963970..75535330 [GRCh37] Chr15:70751023..73322383 [NCBI36] Chr15:15q24.1-24.2	pathogenic
GRCh37/hg19 15q24.1-24.2(chr15:72998989-76069787)x3	copy number gain	See cases [RCV000240066]	Chr15:72998989..76069787 [GRCh37] Chr15:15q24.1-24.2	pathogenic
GRCh37/hg19 15q24.1-24.2(chr15:72958539-75569605)x1	copy number loss	See cases [RCV000240271]	Chr15:72958539..75569605 [GRCh37] Chr15:15q24.1-24.2	pathogenic
GRCh37/hg19 15q24.1-24.3(chr15:74368270-78122737)x3	copy number gain	See cases [RCV000240526]	Chr15:74368270..78122737 [GRCh37] Chr15:15q24.1-24.3	uncertain significance
GRCh37/hg19 15q22.31-26.3(chr15:64637227-102509910)x3	copy number gain	See cases [RCV000240602]	Chr15:64637227..102509910 [GRCh37] Chr15:15q22.31-26.3	pathogenic
GRCh37/hg19 15q24.1-24.2(chr15:72943184-76085232)	copy number loss	Chromosome 15q24 deletion syndrome [RCV003319589]	Chr15:72943184..76085232 [GRCh37] Chr15:15q24.1-24.2	pathogenic
GRCh37/hg19 15q22.1-26.3(chr15:59297293-102480888)x3	copy number gain	not provided [RCV000415836]	Chr15:59297293..102480888 [GRCh37] Chr15:15q22.1-26.3	likely pathogenic
GRCh37/hg19 15q15.1-26.3(chr15:41745084-102354798)x4	copy number gain	See cases [RCV000447123]	Chr15:41745084..102354798 [GRCh37] Chr15:15q15.1-26.3	pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:20733395-102511616)x4	copy number gain	See cases [RCV000447765]	Chr15:20733395..102511616 [GRCh37] Chr15:15q11.2-26.3	pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3	copy number gain	See cases [RCV000510717]	Chr15:22770422..102429112 [GRCh37] Chr15:15q11.2-26.3	pathogenic
GRCh37/hg19 15q24.1-24.2(chr15:72958539-76063285)x1	copy number loss	not provided [RCV000509167]	Chr15:72958539..76063285 [GRCh37] Chr15:15q24.1-24.2	not provided
GRCh37/hg19 15q24.1-24.2(chr15:72943184-75567198)x1	copy number loss	See cases [RCV000510609]	Chr15:72943184..75567198 [GRCh37] Chr15:15q24.1-24.2	pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)	copy number gain	See cases [RCV000512019]	Chr15:22770422..102429112 [GRCh37] Chr15:15q11.2-26.3	pathogenic
NM_001038640.2(GOLGA6A):c.1652G>A (p.Arg551Gln)	single nucleotide variant	Inborn genetic diseases [RCV003301329]	Chr15:74071598 [GRCh38] Chr15:74363939 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1942G>A (p.Gly648Ser)	single nucleotide variant	Inborn genetic diseases [RCV003259268]	Chr15:74071136 [GRCh38] Chr15:74363477 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1912G>C (p.Ala638Pro)	single nucleotide variant	Inborn genetic diseases [RCV003277803]	Chr15:74071166 [GRCh38] Chr15:74363507 [GRCh37] Chr15:15q24.1	likely benign
Single allele	deletion	not provided [RCV000677994]	Chr15:72958539..75569605 [GRCh37] Chr15:15q24.1-24.2	pathogenic
Single allele	duplication	not provided [RCV000677926]	Chr15:31115047..102354857 [GRCh37] Chr15:15q13.2-26.3	pathogenic
GRCh37/hg19 15q23-26.3(chr15:71329220-102270758)x3	copy number gain	not provided [RCV000683703]	Chr15:71329220..102270758 [GRCh37] Chr15:15q23-26.3	pathogenic
GRCh37/hg19 15q24.1-24.2(chr15:72943184-76072324)x1	copy number loss	not provided [RCV000683704]	Chr15:72943184..76072324 [GRCh37] Chr15:15q24.1-24.2	pathogenic
GRCh37/hg19 15q24.1(chr15:74315568-74654641)x3	copy number gain	not provided [RCV000683705]	Chr15:74315568..74654641 [GRCh37] Chr15:15q24.1	uncertain significance
Single allele	duplication	Schizophrenia [RCV000754166]	Chr15:72640623..75277317 [GRCh38] Chr15:15q24.1-24.2	likely pathogenic
Single allele	duplication	Schizophrenia [RCV000754167]	Chr15:74071509..77878298 [GRCh38] Chr15:15q24.1-24.3	likely pathogenic
GRCh37/hg19 15q24.1-24.2(chr15:72965159-75513545)x1	copy number loss	not provided [RCV000751338]	Chr15:72965159..75513545 [GRCh37] Chr15:15q24.1-24.2	uncertain significance
GRCh37/hg19 15q11.1-26.3(chr15:20016811-102493540)x3	copy number gain	not provided [RCV000751155]	Chr15:20016811..102493540 [GRCh37] Chr15:15q11.1-26.3	pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20071673-102461162)x3	copy number gain	not provided [RCV000751156]	Chr15:20071673..102461162 [GRCh37] Chr15:15q11.1-26.3	pathogenic
GRCh37/hg19 15q24.1-24.2(chr15:72926922-75544524)x1	copy number loss	not provided [RCV000848080]	Chr15:72926922..75544524 [GRCh37] Chr15:15q24.1-24.2	pathogenic
GRCh37/hg19 15q24.1-24.2(chr15:72963271-76064900)x3	copy number gain	not provided [RCV000848212]	Chr15:72963271..76064900 [GRCh37] Chr15:15q24.1-24.2	pathogenic
GRCh37/hg19 15q24.1-24.2(chr15:72943184-75544524)x1	copy number loss	not provided [RCV000849229]	Chr15:72943184..75544524 [GRCh37] Chr15:15q24.1-24.2	pathogenic
GRCh37/hg19 15q24.1-24.2(chr15:72943184-75567198)x1	copy number loss	not provided [RCV001006709]	Chr15:72943184..75567198 [GRCh37] Chr15:15q24.1-24.2	pathogenic
NC_000015.9:g.(?_32964879)_(91358519_?)dup	duplication	Bloom syndrome [RCV001343104]\|Familial colorectal cancer [RCV001325176]	Chr15:32964879..91358519 [GRCh37] Chr15:15q13.3-26.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1651C>G (p.Arg551Gly)	single nucleotide variant	Inborn genetic diseases [RCV003276987]	Chr15:74071599 [GRCh38] Chr15:74363940 [GRCh37] Chr15:15q24.1	uncertain significance
NC_000015.9:g.(?_72978569)_(75722716_?)del	deletion	not provided [RCV001863697]	Chr15:72978569..75722716 [GRCh37] Chr15:15q24.1-24.2	pathogenic
NC_000015.9:g.(?_72978569)_(75190071_?)dup	duplication	Bardet-Biedl syndrome [RCV003122929]	Chr15:72978569..75190071 [GRCh37] Chr15:15q24.1	uncertain significance
GRCh37/hg19 15q24.1-24.3(chr15:74353736-77884397)x1	copy number loss	not provided [RCV002474580]	Chr15:74353736..77884397 [GRCh37] Chr15:15q24.1-24.3	pathogenic
NM_001038640.2(GOLGA6A):c.1093G>A (p.Glu365Lys)	single nucleotide variant	Inborn genetic diseases [RCV002839817]	Chr15:74074756 [GRCh38] Chr15:74367097 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1834C>T (p.Pro612Ser)	single nucleotide variant	Inborn genetic diseases [RCV002839643]	Chr15:74071244 [GRCh38] Chr15:74363585 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.203A>T (p.Asp68Val)	single nucleotide variant	Inborn genetic diseases [RCV003001355]	Chr15:74080617 [GRCh38] Chr15:74372958 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1165C>T (p.Arg389Cys)	single nucleotide variant	Inborn genetic diseases [RCV002708003]	Chr15:74074684 [GRCh38] Chr15:74367025 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1231G>A (p.Asp411Asn)	single nucleotide variant	Inborn genetic diseases [RCV002845928]	Chr15:74074618 [GRCh38] Chr15:74366959 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1859A>G (p.His620Arg)	single nucleotide variant	Inborn genetic diseases [RCV002978010]	Chr15:74071219 [GRCh38] Chr15:74363560 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1955T>A (p.Val652Asp)	single nucleotide variant	Inborn genetic diseases [RCV002951129]	Chr15:74071037 [GRCh38] Chr15:74363378 [GRCh37] Chr15:15q24.1	likely benign
NM_001038640.2(GOLGA6A):c.2041C>G (p.Gln681Glu)	single nucleotide variant	Inborn genetic diseases [RCV002951286]	Chr15:74070951 [GRCh38] Chr15:74363292 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.895C>G (p.Gln299Glu)	single nucleotide variant	Inborn genetic diseases [RCV002661980]	Chr15:74074954 [GRCh38] Chr15:74367295 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.850G>A (p.Glu284Lys)	single nucleotide variant	Inborn genetic diseases [RCV002977144]	Chr15:74074999 [GRCh38] Chr15:74367340 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1806G>T (p.Lys602Asn)	single nucleotide variant	Inborn genetic diseases [RCV002744406]	Chr15:74071272 [GRCh38] Chr15:74363613 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.952C>G (p.Leu318Val)	single nucleotide variant	Inborn genetic diseases [RCV002641983]	Chr15:74074897 [GRCh38] Chr15:74367238 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.592C>A (p.Gln198Lys)	single nucleotide variant	Inborn genetic diseases [RCV002808792]	Chr15:74075958 [GRCh38] Chr15:74368299 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1052C>T (p.Ala351Val)	single nucleotide variant	Inborn genetic diseases [RCV002722767]	Chr15:74074797 [GRCh38] Chr15:74367138 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1950G>T (p.Gln650His)	single nucleotide variant	Inborn genetic diseases [RCV003175009]	Chr15:74071128 [GRCh38] Chr15:74363469 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.752C>T (p.Ser251Leu)	single nucleotide variant	Inborn genetic diseases [RCV003190696]	Chr15:74075690 [GRCh38] Chr15:74368031 [GRCh37] Chr15:15q24.1	uncertain significance
GRCh37/hg19 15q22.33-26.1(chr15:67358491-91644328)x3	copy number gain	not provided [RCV003222839]	Chr15:67358491..91644328 [GRCh37] Chr15:15q22.33-26.1	pathogenic
NM_001038640.2(GOLGA6A):c.1798A>G (p.Lys600Glu)	single nucleotide variant	Inborn genetic diseases [RCV003376309]	Chr15:74071369 [GRCh38] Chr15:74363710 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.853C>A (p.Pro285Thr)	single nucleotide variant	Inborn genetic diseases [RCV003385044]	Chr15:74074996 [GRCh38] Chr15:74367337 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1729G>T (p.Ala577Ser)	single nucleotide variant	Inborn genetic diseases [RCV003351267]	Chr15:74071438 [GRCh38] Chr15:74363779 [GRCh37] Chr15:15q24.1	uncertain significance
NM_001038640.2(GOLGA6A):c.1104G>A (p.Arg368=)	single nucleotide variant	not provided [RCV003394990]	Chr15:74074745 [GRCh38] Chr15:74367086 [GRCh37] Chr15:15q24.1	likely benign
NM_001038640.2(GOLGA6A):c.1932T>G (p.Leu644=)	single nucleotide variant	not provided [RCV003456900]	Chr15:74071146 [GRCh38] Chr15:74363487 [GRCh37] Chr15:15q24.1	likely benign

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1092
Count of miRNA genes:	711
Interacting mature miRNAs:	804
Transcripts:	ENST00000290438, ENST00000562157, ENST00000568723, ENST00000569486
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

adipose tissue

appendage

High

Medium

Low

112

111

354

Below cutoff

1314

1270

1091

367

525

265

3026

1195

2568

162

629

1008

106

784

1989

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001038640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC013486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF263742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF266285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK292574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC131515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DB039513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HG005346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HG005347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000290438 ⟹ ENSP00000290438

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	74,069,857 - 74,082,550 (-)	Ensembl

RefSeq Acc Id:

ENST00000562157

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	74,070,646 - 74,071,310 (-)	Ensembl

RefSeq Acc Id:

ENST00000568723

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	74,077,076 - 74,082,550 (-)	Ensembl

RefSeq Acc Id:

ENST00000569486

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	74,072,251 - 74,073,013 (-)	Ensembl

RefSeq Acc Id:

NM_001038640 ⟹ NP_001033729

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	74,069,857 - 74,082,550 (-)	NCBI
GRCh37	15	74,362,198 - 74,374,891 (-)	RGD
Build 36	15	72,149,251 - 72,161,944 (-)	NCBI Archive
CHM1_1	15	74,480,151 - 74,492,882 (-)	NCBI
T2T-CHM13v2.0	15	71,887,216 - 71,899,900 (-)	NCBI

Sequence:

show sequence

AGTCACACAGCAGCCTTGTAGGTGACTGGAGGTGTTCGCTGATGTGGCCCCAACCCTACCTCCC
TCCCCACCCCATGATGTTAGAAGAATCTCGACAGAATAAATTGGCAGCAGCCAAGAAAAAGCTA
AAAGAATATCAGCAAAGGAAGAGCCCTGGTATTCCAGCAGGAGCAAAGACAAAAAAGAAAAAAA
CTGACAGTAGCCCTGAGACAACCACTTCCGGTGGTTGCCACTCACCTGGGGATAGCCAGTACCA
AGAACTAGCAGTAGCCCTGGAGTCAAGCTCAGTGACAATCAGTCAACTCAATGAAAACATAGAA
TCATTGAAACAGCAGAAGAAACAAGTGGAACATCAGCTGGAAGAAGCAAAGAAAACAAACAATG
AAATACACAAAGCACAAATGGAGCGGTTAGAGACAATCAACATCCTCACATTGGAAAAGGCAGA
CTTGAAGACCACCCTTTACCATACTAAACGTGCTGCCCGACACTTCGAAGAAGAGTCCAAGGAT
CTGGCTGGCCGCCTGCAATACTCCTTACAGCGTATTCAAGAATTGGAGCGGGCTCTCTGTGCTG
TGTCTACACAGCAGCAGGAAGAGGACAGGTCCTCGAGCTGCAGAGAAGCGGTCCTCCAGCGGTG
GTTACAGCAGACCATAAAGGAGCGGGCGCTGCTGAACGCACACGTGACACAGGTGACAGAGTCA
CTAAAACAAGTCCAGCTAGAGCGAGACGAATATGCTAAACACATAAAAGGAGAGAGGGCCCGGT
GGCAGGAGAGGATGTGGAAAATGTCGGTGGAGGCTCGAACATTGAAGGAAGAGAAGAAGCGTGA
CATACATCGGATACAGGAGCTGGAGAGGAGCTTGTCCGAACTCAAAAACCAGATGGCTGAGCCC
CCATCCCTGGCGCCCCCAGCAGTGACCTCTGTGGTGGAACAGCTACAAGATGAGGCCAAACACC
TGAGGCAGGAGGTGGAAGGTCTGGAGGGAAAGCTCCAGTCCCAGGTGGAAAACAATCAGGCCTT
GAGTCTCCTTAGCAAGGAACAAAAGCAGAGACTCCAGGAGCAGGAGGAGATGCTCCGAGAGCAG
GAGGCGCAGAGAGTGCGGGAGCAGGAGAGACTGTGTGAACAAAACGAGAGGCTTCGGGAGCAGC
AGAAGACGCTACAGGAGCAGGGTGAGAGGCTGCGAAAGCAGGAGCAGAGGCTACGCAAACAGGA
GGAGAGGCTGCGAAAGGAGGAGGAGAGGCTGCAAAAGCAGGAAAAGAGGCTGTGGGACCAGGAG
GAGAGGCTGTGGAAGAAGGAGGAGAGGCTACAAAAGCAGGAGGAGAGGCTCGCGCTCTCCCAGA
ACCACAAGCTCGACAAGCAGCTGGCCGAGCCACAGTGCAGCTTCGAGGATCTGAACAACGAGAA
AAAGAGCGCACTGCAGTTGGAGCAGCAAGTAAAGGAGCTGCAGGAGAAGCTAGACGAGGAGCAC
CTAGAAGCTGCCAGCCACCAGAACCAACAGCTAGAGACCCAGCTAAGCCTCGTGGCTCTCCCTG
GAGAAGGAGATGGAGGACAACATCTGGACAGTGAGGAGGAGGAGGCGCCTCGGCCCACGCCAAA
CATCCCAGAGGACCTGGAGAGCCGGGAGGCCACGAGCAGCTTTATGGACCTCCCGAAGGAGAAG
GCGGACGGGACGGAGCAGGTGGAGAGACGAGAGCTTGGATTCGTCCAGCCTTCTGGAGTGACAG
ACGGCATGAGAGAGTCCTTCACCGTATATGAAAGCCAGGGGGCAGTGCCAAACACGCGGCACCA
GGAGATGGAGGATGTCATCAGGCTGGCCCAGAAGGAGGAGGAGATGAAGGTGAAGCTGCTGGAG
CTGCAAGAGTTGGTGTTGCCCCTTGTGGGCAACCATGAGGGGCATGGCAAATTCCTCATCGCTG
CCCAGAACCCTGCTGATGAGCCCACTCCAGGGGCCCCAGCCCCCCAGGAACTTGGGGCTGCCGG
TGAGCAGGATGTTTTTTATGAAGTGAGCCTGGACAACAACGTGGAGCCTGCACCAGGAGCGGCC
AGGGAGGGTTCTCCCCATGACAACCCCACTGTACAGCAGATCGTGCAGCTGTCTCCTGTCATGC
AGGACACCTAGGAGCACCCAGGCTTGCCCAGCAAACCCTGCGTGCCATTCTTCTACCAGGCAGC
CGAGAACAGGGAGATAAACATCATCATCTTCTAAGAGCTGGTCAAGAAATTTAAAACAACAACA
ACAACAAAAAGTTACGGGGTTCATCTCCTACACAATTCATTTACTCCATTTGAATGCTAGAGCC
ACTCACATTTATTTGTGTTTCTAATTTACCGTTTAAATTTATTTGTAAAAAGTTAAGGGAGAGT
TGGTCTTTCCCTGATGTTCTTTCTGGCATCCTTTAGCATTTTTATTTTTAATTTGATAATTGTA
GGTCATTAGTATGCATATCGAGTTTGCCCTTAGGTGGTGGGAATTCAAACACACAAAGACCCAC
TAATTTGCACAAAACTATTCTGGCTGGTTTGGAACAGGCTGCCATGCTTTTTTAATGTTATTGC
AGCATGTATATTCATTCCAGAATTCAGATAAAATGTGCTTATGTTCTGCTATTACGTTTGATCG
AATCCTAACCACAGTGAGCTCTTCATTAGCTCAATATGTGGTTTGCCCTCAATTGAGCACTGTT
TATTACTTTGTAATATGCCACTGTGAGTACTGACATTTAGAGTTGTTTAAAGGCCAAGAACTGG
AAACAGCCTTTTCCCTATTTTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGCTTTT
TAAATCTCACAGAAGAGGAAAGTGGCCTGCTCTGGCAGGTGTGTGCAGGATAGAGTGTGTTTCA
TTTGTTCTGGTGCCAAGAATGAGCGCTGTACTATGGTAGTTCCCTTAGGATTTGTATGTGCTCT
GGGCTCATGAAGATATTGCATCATGAGCTGCAGCAGTTGTACCCTTTCTTGATGACCTAAAAAG
GGATTATTTCTGAGGAATGAAAGGCTCCCATCATTGACTGTGGATGTGGAAAACCTTTTCTAGC
TTAGAGCATTTATATCTACAATACATTTTAAAGTCAGAGTTCATGTTACCTGTTTTAATCACGA
GTATATGTCCCAGTACACAAAAGGGCACTGGTTGGCATTC

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Protein Sequences


Protein RefSeqs	NP_001033729	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF72196	(Get FASTA)	NCBI Sequence Viewer
	AAF72535	(Get FASTA)	NCBI Sequence Viewer
	AAI31516	(Get FASTA)	NCBI Sequence Viewer
	BAF85263	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000290438
	ENSP00000290438.3
GenBank Protein	Q9NYA3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001033729 ⟸ NM_001038640

- UniProtKB:

A8K959 (UniProtKB/Swiss-Prot), Q9NYA7 (UniProtKB/Swiss-Prot), Q9NYA3 (UniProtKB/Swiss-Prot), A2VDJ1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWPQPYLPPHPMMLEESRQNKLAAAKKKLKEYQQRKSPGIPAGAKTKKKKTDSSPETTTSGGCH
SPGDSQYQELAVALESSSVTISQLNENIESLKQQKKQVEHQLEEAKKTNNEIHKAQMERLETIN
ILTLEKADLKTTLYHTKRAARHFEEESKDLAGRLQYSLQRIQELERALCAVSTQQQEEDRSSSC
REAVLQRWLQQTIKERALLNAHVTQVTESLKQVQLERDEYAKHIKGERARWQERMWKMSVEART
LKEEKKRDIHRIQELERSLSELKNQMAEPPSLAPPAVTSVVEQLQDEAKHLRQEVEGLEGKLQS
QVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCEQNERLREQQKTLQEQGERLRKQ
EQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKLDKQLAEPQCS
FEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASHQNQQLETQLSLVALPGEGDGGQHLDSEEE
EAPRPTPNIPEDLESREATSSFMDLPKEKADGTEQVERRELGFVQPSGVTDGMRESFTVYESQG
AVPNTRHQEMEDVIRLAQKEEEMKVKLLELQELVLPLVGNHEGHGKFLIAAQNPADEPTPGAPA
PQELGAAGEQDVFYEVSLDNNVEPAPGAAREGSPHDNPTVQQIVQLSPVMQDT

hide sequence

RefSeq Acc Id:

ENSP00000290438 ⟸ ENST00000290438

Protein Domains

Golgin subfamily A conserved

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9NYA3-F1-model_v2	AlphaFold	Q9NYA3	1-693	view protein structure

Promoters

RGD ID:

7230063

Promoter ID:

EPDNEW_H20777

Type:

multiple initiation site

Name:

GOLGA6A_1

Description:

golgin A6 family member A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	74,082,550 - 74,082,610	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:13567	AgrOrtholog
COSMIC	GOLGA6A	COSMIC
Ensembl Genes	ENSG00000159289	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000290438	ENTREZGENE
	ENST00000290438.3	UniProtKB/Swiss-Prot
GTEx	ENSG00000159289	GTEx
HGNC ID	HGNC:13567	ENTREZGENE
Human Proteome Map	GOLGA6A	Human Proteome Map
InterPro	GOLGA_cons_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Golgin_A	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	hsa:342096	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	342096	ENTREZGENE
OMIM	610288	OMIM
PANTHER	GOLGIN SUBFAMILY A MEMBER 6A-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10881	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	GOLGA2L5	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	PA38364	PharmGKB
UniProt	A2VDJ1	ENTREZGENE, UniProtKB/TrEMBL
	A8K959	ENTREZGENE
	GOG6A_HUMAN	UniProtKB/Swiss-Prot, ENTREZGENE
	Q9NYA7	ENTREZGENE
UniProt Secondary	A8K959	UniProtKB/Swiss-Prot
	Q9NYA7	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-24	GOLGA6A	golgin A6 family member A	GOLGA6A	golgin A6 family, member A	Symbol and/or name change	5135510	APPROVED
2011-07-27	GOLGA6A	golgin A6 family, member A	GOLGA6	golgi autoantigen, golgin subfamily a, 6	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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