Symbol:
POLR1A
Name:
RNA polymerase I subunit A
RGD ID:
18662020
Description:
ENCODES a protein that exhibits DNA-directed RNA polymerase activity (ortholog); INVOLVED IN rRNA transcription (ortholog); PARTICIPATES IN nucleotide excision repair pathway; RNA polymerase I transcription pathway; ASSOCIATED WITH acrofacial dysostosis Cincinnati type (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 31 (ortholog); FOUND IN RNA polymerase I complex (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
DNA-directed RNA polymerase I subunit RPA1; polymerase (RNA) I polypeptide A, 194kDa
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 14 21,050,526 - 21,127,010 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 14 21,050,799 - 21,125,990 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666045 91,355,366 - 91,437,424 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Annotations - SMPDB
POLR1A Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 14 21,050,526 - 21,127,010 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 14 21,050,799 - 21,125,990 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666045 91,355,366 - 91,437,424 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
POLR1A Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 2 86,020,216 - 86,105,886 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 2 86,020,216 - 86,106,155 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 2 86,247,339 - 86,333,009 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 2 86,106,962 - 86,186,789 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 2 86,166,037 - 86,244,626 NCBI Celera 2 86,081,632 - 86,161,424 (-) NCBI Celera Cytogenetic Map 2 p11.2 NCBI HuRef 2 86,150,981 - 86,230,775 (-) NCBI HuRef CHM1_1 2 86,182,963 - 86,262,735 (-) NCBI CHM1_1 T2T-CHM13v2.0 2 86,022,315 - 86,107,956 (-) NCBI T2T-CHM13v2.0
Polr1a Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 6 71,886,037 - 71,956,419 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 6 71,886,037 - 71,961,919 (+) Ensembl GRCm39 Ensembl GRCm38 6 71,909,053 - 71,979,435 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 6 71,909,053 - 71,984,935 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 6 71,859,047 - 71,929,354 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 6 71,838,582 - 71,908,869 (+) NCBI MGSCv36 mm8 Celera 6 73,992,680 - 74,063,054 (+) NCBI Celera Cytogenetic Map 6 C1 NCBI cM Map 6 32.21 NCBI
Polr1a Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 4 105,508,305 - 105,572,272 (+) NCBI GRCr8 mRatBN7.2 4 103,950,051 - 104,014,022 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 4 103,950,051 - 104,014,020 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 4 109,329,917 - 109,393,831 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 4 105,105,033 - 105,168,947 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 4 103,719,955 - 103,783,923 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 4 99,822,964 - 99,903,969 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 4 99,823,252 - 99,887,132 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 4 164,601,148 - 164,665,022 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 4 105,187,426 - 105,251,385 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 4 105,431,906 - 105,495,866 (+) NCBI Celera 4 93,106,344 - 93,170,325 (+) NCBI Celera Cytogenetic Map 4 q32 NCBI
Polr1a Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955424 1,508,037 - 1,593,108 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955424 1,507,935 - 1,595,068 (+) NCBI ChiLan1.0 ChiLan1.0
POLR1A Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 12 40,277,726 - 40,365,224 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 2A 40,280,716 - 40,361,804 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 2A 86,070,160 - 86,157,606 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 2A 87,618,880 - 87,705,352 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 2A 87,622,466 - 87,705,357 (-) Ensembl panpan1.1 panPan2
POLR1A Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 17 38,990,379 - 39,070,910 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 17 39,000,778 - 39,070,356 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 17 38,675,191 - 38,756,338 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 17 39,722,717 - 39,805,020 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 17 39,733,845 - 39,805,015 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 17 38,891,244 - 38,972,175 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 17 38,927,011 - 39,009,075 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 17 39,313,308 - 39,394,902 (+) NCBI UU_Cfam_GSD_1.0
Polr1a Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024406292 79,467,900 - 79,527,456 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936712 1,331,073 - 1,389,856 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936712 1,331,016 - 1,390,544 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
POLR1A Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 3 58,667,971 - 58,750,421 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 3 58,670,377 - 58,750,441 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 3 61,529,882 - 61,609,817 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
Polr1a
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSCSAT00000014344 ⟹ ENSCSAP00000012320
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 Ensembl 14 21,050,799 - 21,125,990 (+) Ensembl
RefSeq Acc Id:
XM_007969992 ⟹ XP_007968183
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 14 21,050,526 - 21,127,010 (+) NCBI Vero_WHO_p1.0 NW_023666045 91,355,366 - 91,437,424 (-) NCBI
Sequence:
CTGAAGCGGAAGAAGACGAAAGCAAACATAAAATGGGAGGTTGCAAGCTCATGGTTTGAAAGATTTTGTCACGGAAGCTAAAAGCTCTATACACCTCATGTGCCTCGGAGGAATTTTCTTAAATGATT
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RefSeq Acc Id:
XP_007968183 ⟸ XM_007969992
- UniProtKB:
A0A0D9RUN1 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSCSAP00000012320 ⟸ ENSCSAT00000014344
