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Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | acrofacial dysostosis Cincinnati type | | ISO | RGD:1345694 | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | acrofacial dysostosis Cincinnati type | | ISO | RGD:1345694 | 7240710 | | OMIM | | |
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1. | MGD and Homologene mouse data transfer |
2. | MGD data from the GO Consortium |
3. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
4. | Pipeline to import KEGG annotations from KEGG into RGD |
5. | Pipeline to import SMPDB annotations from SMPDB into RGD |
6. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
7. | RGD automated import pipeline for gene-chemical interactions |
8. | Schneider DA Gene. 2012 Feb 10;493(2):176-84. doi: 10.1016/j.gene.2011.08.006. Epub 2011 Aug 26. |
9. | Vannini A and Cramer P, Mol Cell. 2012 Feb 24;45(4):439-46. doi: 10.1016/j.molcel.2012.01.023. |
10. | Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6. |
PMID:9236775 | PMID:10349636 | PMID:10922068 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12446911 | PMID:12477932 | PMID:12520002 | PMID:14610273 | PMID:14681479 | PMID:15226435 |
PMID:15489334 | PMID:15782199 | PMID:16141072 | PMID:16141073 | PMID:18799693 | PMID:20059953 | PMID:20211142 | PMID:21059229 | PMID:21267068 | PMID:21873635 | PMID:23667505 | PMID:30272023 |
PMID:30746471 | PMID:32325033 |
Polr1a (Mus musculus - house mouse) |
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POLR1A (Homo sapiens - human) |
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Polr1a (Rattus norvegicus - Norway rat) |
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Polr1a (Chinchilla lanigera - long-tailed chinchilla) |
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POLR1A (Pan paniscus - bonobo/pygmy chimpanzee) |
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POLR1A (Canis lupus familiaris - dog) |
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Polr1a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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POLR1A (Sus scrofa - pig) |
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POLR1A (Chlorocebus sabaeus - African green monkey) |
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Polr1a (Heterocephalus glaber - naked mole-rat) |
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AF000938 |
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UniSTS:235469 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
RefSeq Transcripts | NM_009088 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006505804 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC122200 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC153795 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF000938 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK013826 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK031689 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK045809 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK077818 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK082883 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK087773 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK134239 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK147379 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK160785 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK160970 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK178488 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK185409 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC010254 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC034785 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC049190 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC053744 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466523 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CJ260853 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000055296 ⟹ ENSMUSP00000060858 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000205333 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000205517 ⟹ ENSMUSP00000146050 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000205842 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000205942 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000206513 ⟹ ENSMUSP00000145553 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000206556 ⟹ ENSMUSP00000146166 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000206753 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000206823 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000206982 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_009088 ⟹ NP_033114 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006505804 ⟹ XP_006505867 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_033114 | (Get FASTA) | NCBI Sequence Viewer |
XP_006505867 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAB66718 | (Get FASTA) | NCBI Sequence Viewer |
AAH10254 | (Get FASTA) | NCBI Sequence Viewer | |
AAH34785 | (Get FASTA) | NCBI Sequence Viewer | |
AAH49190 | (Get FASTA) | NCBI Sequence Viewer | |
AAH53744 | (Get FASTA) | NCBI Sequence Viewer | |
BAC32498 | (Get FASTA) | NCBI Sequence Viewer | |
BAC38667 | (Get FASTA) | NCBI Sequence Viewer | |
BAC39997 | (Get FASTA) | NCBI Sequence Viewer | |
BAE22059 | (Get FASTA) | NCBI Sequence Viewer | |
BAE27874 | (Get FASTA) | NCBI Sequence Viewer | |
BAE36009 | (Get FASTA) | NCBI Sequence Viewer | |
BAE36122 | (Get FASTA) | NCBI Sequence Viewer | |
EDK98958 | (Get FASTA) | NCBI Sequence Viewer | |
O35134 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_033114 ⟸ NM_009088 |
- UniProtKB: | O35134 (UniProtKB/Swiss-Prot), Q3TU49 (UniProtKB/TrEMBL), Q3UHI3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006505867 ⟸ XM_006505804 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000145553 ⟸ ENSMUST00000206513 |
RefSeq Acc Id: | ENSMUSP00000146166 ⟸ ENSMUST00000206556 |
RefSeq Acc Id: | ENSMUSP00000146050 ⟸ ENSMUST00000205517 |
RefSeq Acc Id: | ENSMUSP00000060858 ⟸ ENSMUST00000055296 |
RGD ID: | 6839819 | ||||||||
Promoter ID: | MM_KWN:46439 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | ENSMUST00000082094, NM_027275, UC009CHR.1, UC009CHS.1, UC009CHT.1, UC009CHU.1, UC009CHV.1 | ||||||||
Position: |
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RGD ID: | 6839973 | ||||||||
Promoter ID: | MM_KWN:46440 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | Liver | ||||||||
Transcripts: | UC009CHW.1 | ||||||||
Position: |
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RGD ID: | 6889994 | ||||||||
Promoter ID: | EPDNEW_M8448 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Polr1a_1 | ||||||||
Description: | Mus musculus polymerase I polypeptide A , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1096397 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000049553 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Protein | ENSMUSP00000060858 | ENTREZGENE, UniProtKB/Swiss-Prot |
ENSMUSP00000145553 | UniProtKB/TrEMBL | |
ENSMUSP00000146050 | UniProtKB/TrEMBL | |
ENSMUSP00000146166 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSMUST00000055296 | ENTREZGENE, UniProtKB/Swiss-Prot |
ENSMUST00000205517 | UniProtKB/TrEMBL | |
ENSMUST00000206513 | UniProtKB/TrEMBL | |
ENSMUST00000206556 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.132.30 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
1.10.274.100 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | DNA-dir_RNA_pol1_lsu | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RNA_pol_asu | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RNA_pol_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RNA_pol_Rpb1_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RNA_pol_Rpb1_3 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RNA_pol_Rpb1_3_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RNA_pol_Rpb1_4 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RNA_pol_Rpb1_5 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Rpb1_funnel_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:20019 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGD | MGI:1096397 | ENTREZGENE |
NCBI Gene | 20019 | ENTREZGENE |
PANTHER | PTHR19376:SF11 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Pfam | RNA_pol_Rpb1_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RNA_pol_Rpb1_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RNA_pol_Rpb1_3 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RNA_pol_Rpb1_4 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RNA_pol_Rpb1_5 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Polr1a | PhenoGen |
SMART | RPOLA_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A0U1RNG3_MOUSE | UniProtKB/TrEMBL |
A0A0U1RPM9_MOUSE | UniProtKB/TrEMBL | |
A0A0U1RPX8_MOUSE | UniProtKB/TrEMBL | |
O35134 | ENTREZGENE | |
Q05BP7_MOUSE | UniProtKB/TrEMBL | |
Q05DK4_MOUSE | UniProtKB/TrEMBL | |
Q3TU49 | ENTREZGENE, UniProtKB/TrEMBL | |
Q3TUG2_MOUSE | UniProtKB/TrEMBL | |
Q3UHI3 | ENTREZGENE, UniProtKB/TrEMBL | |
Q3UZ02_MOUSE | UniProtKB/TrEMBL | |
Q80Y46_MOUSE | UniProtKB/TrEMBL | |
Q8BNM6_MOUSE | UniProtKB/TrEMBL | |
Q8C2X2_MOUSE | UniProtKB/TrEMBL | |
RPA1_MOUSE | UniProtKB/Swiss-Prot | |
UniProt Secondary | Q7TSA9 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2017-11-21 | Polr1a | polymerase (RNA) I polypeptide A | 2900087K15Rik | RIKEN cDNA 2900087K15 gene | Data Merged | 737654 | PROVISIONAL |