TSPAN11 (tetraspanin 11) - Rat Genome Database

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Gene: TSPAN11 (tetraspanin 11) Chlorocebus sabaeus
Analyze
Symbol: TSPAN11
Name: tetraspanin 11
RGD ID: 18631296
Description: FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetraspanin-11
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11130,607,817 - 30,678,693 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1130,607,875 - 30,678,790 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660694,308,844 - 4,377,847 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TSPAN11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11130,607,817 - 30,678,693 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1130,607,875 - 30,678,790 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660694,308,844 - 4,377,847 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TSPAN11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,926,748 - 31,016,502 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,926,428 - 30,996,602 (+)EnsemblGRCh38hg38GRCh38
GRCh371231,079,682 - 31,149,534 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361230,971,105 - 31,036,722 (+)NCBINCBI36Build 36hg18NCBI36
Celera1236,222,678 - 36,292,351 (+)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1230,844,681 - 30,914,774 (+)NCBIHuRef
CHM1_11231,044,883 - 31,114,476 (+)NCBICHM1_1
T2T-CHM13v2.01230,801,368 - 30,891,025 (+)NCBIT2T-CHM13v2.0
Tspan11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396127,864,585 - 127,930,940 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6127,864,552 - 127,930,940 (+)EnsemblGRCm39 Ensembl
GRCm386127,887,509 - 127,953,031 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6127,887,589 - 127,953,977 (+)EnsemblGRCm38mm10GRCm38
MGSCv376127,837,640 - 127,903,049 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366127,853,241 - 127,918,650 (+)NCBIMGSCv36mm8
Celera6129,562,702 - 129,626,037 (+)NCBICelera
Cytogenetic Map6F3NCBI
cM Map662.56NCBI
Tspan11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84162,424,327 - 162,491,653 (+)NCBIGRCr8
mRatBN7.24160,738,149 - 160,805,522 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4160,738,404 - 160,805,520 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4166,968,306 - 167,035,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04162,751,216 - 162,818,393 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04161,385,290 - 161,452,456 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04160,455,845 - 160,522,905 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4160,455,986 - 160,522,904 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04231,093,058 - 231,159,405 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44164,340,111 - 164,407,946 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14164,585,046 - 164,652,881 (+)NCBI
Celera4149,446,650 - 149,513,483 (+)NCBICelera
Cytogenetic Map4q42NCBI
TSPAN11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21065,789,252 - 65,859,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11265,782,194 - 65,855,580 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01255,283,377 - 55,358,044 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11257,914,874 - 57,957,465 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1257,919,656 - 57,985,438 (-)Ensemblpanpan1.1panPan2
TSPAN11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12741,478,505 - 41,521,229 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2741,477,938 - 41,517,173 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha275,161,461 - 5,236,303 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02741,804,050 - 41,878,861 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2741,803,552 - 41,878,843 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12741,741,365 - 41,816,167 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02741,716,360 - 41,791,138 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0274,521,780 - 4,596,612 (-)NCBIUU_Cfam_GSD_1.0
Tspan11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945105,516,023 - 105,589,467 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366063,599,271 - 3,639,013 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366063,594,698 - 3,668,319 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl566,853,404 - 66,911,569 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1566,852,803 - 66,911,610 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,160,214 - 69,217,001 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tspan11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624860581,951 - 617,163 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624860579,614 - 637,069 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 36 11 60
Below cutoff 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000005480   ⟹   ENSCSAP00000003700
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1130,607,875 - 30,678,790 (+)Ensembl
RefSeq Acc Id: XM_007968090   ⟹   XP_007966281
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11130,607,819 - 30,678,693 (+)NCBI
Vero_WHO_p1.0NW_0236660694,308,844 - 4,377,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007968092   ⟹   XP_007966283
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11130,607,830 - 30,678,693 (+)NCBI
Vero_WHO_p1.0NW_0236660694,308,844 - 4,377,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007968095   ⟹   XP_007966286
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11130,607,817 - 30,662,455 (+)NCBI
Vero_WHO_p1.0NW_0236660694,323,319 - 4,377,847 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007966281 (Get FASTA)   NCBI Sequence Viewer  
  XP_007966283 (Get FASTA)   NCBI Sequence Viewer  
  XP_007966286 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003700.1
Reference Protein Sequences
RefSeq Acc Id: XP_007966286   ⟸   XM_007968095
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007966281   ⟸   XM_007968090
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R511 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007966283   ⟸   XM_007968092
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R511 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000003700   ⟸   ENSCSAT00000005480


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007437 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005480.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
InterPro Tetraspanin UniProtKB/TrEMBL
  Tetraspanin/Peripherin UniProtKB/TrEMBL
  Tetraspanin_EC2_sf UniProtKB/TrEMBL
NCBI Gene TSPAN11 ENTREZGENE
PANTHER PTHR19282 UniProtKB/TrEMBL
  TETRASPANIN-11 UniProtKB/TrEMBL
Pfam Tetraspanin UniProtKB/TrEMBL
PIRSF Tetraspanin UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/TrEMBL
Superfamily-SCOP SSF48652 UniProtKB/TrEMBL
UniProt A0A0D9R511 ENTREZGENE, UniProtKB/TrEMBL