TSPAN11 (tetraspanin 11) - Rat Genome Database

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Gene: TSPAN11 (tetraspanin 11) Sus scrofa
Analyze
Symbol: TSPAN11
Name: tetraspanin 11
RGD ID: 14231722
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetraspanin-11
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl566,853,404 - 66,911,569 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1566,852,803 - 66,911,610 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,160,214 - 69,217,001 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TSPAN11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl566,853,404 - 66,911,569 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1566,852,803 - 66,911,610 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,160,214 - 69,217,001 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSPAN11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,926,748 - 31,016,502 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,926,428 - 30,996,602 (+)EnsemblGRCh38hg38GRCh38
GRCh371231,079,682 - 31,149,534 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361230,971,105 - 31,036,722 (+)NCBINCBI36Build 36hg18NCBI36
Celera1236,222,678 - 36,292,351 (+)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1230,844,681 - 30,914,774 (+)NCBIHuRef
CHM1_11231,044,883 - 31,114,476 (+)NCBICHM1_1
T2T-CHM13v2.01230,801,368 - 30,891,025 (+)NCBIT2T-CHM13v2.0
Tspan11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396127,864,585 - 127,930,940 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6127,864,552 - 127,930,940 (+)EnsemblGRCm39 Ensembl
GRCm386127,887,509 - 127,953,031 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6127,887,589 - 127,953,977 (+)EnsemblGRCm38mm10GRCm38
MGSCv376127,837,640 - 127,903,049 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366127,853,241 - 127,918,650 (+)NCBIMGSCv36mm8
Celera6129,562,702 - 129,626,037 (+)NCBICelera
Cytogenetic Map6F3NCBI
cM Map662.56NCBI
Tspan11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84162,424,327 - 162,491,653 (+)NCBIGRCr8
mRatBN7.24160,738,149 - 160,805,522 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4160,738,404 - 160,805,520 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4166,968,306 - 167,035,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04162,751,216 - 162,818,393 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04161,385,290 - 161,452,456 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04160,455,845 - 160,522,905 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4160,455,986 - 160,522,904 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04231,093,058 - 231,159,405 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44164,340,111 - 164,407,946 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14164,585,046 - 164,652,881 (+)NCBI
Celera4149,446,650 - 149,513,483 (+)NCBICelera
Cytogenetic Map4q42NCBI
TSPAN11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21065,789,252 - 65,859,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11265,782,194 - 65,855,580 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01255,283,377 - 55,358,044 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11257,914,874 - 57,957,465 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1257,919,656 - 57,985,438 (-)Ensemblpanpan1.1panPan2
TSPAN11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12741,478,505 - 41,521,229 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2741,477,938 - 41,517,173 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha275,161,461 - 5,236,303 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02741,804,050 - 41,878,861 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2741,803,552 - 41,878,843 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12741,741,365 - 41,816,167 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02741,716,360 - 41,791,138 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0274,521,780 - 4,596,612 (-)NCBIUU_Cfam_GSD_1.0
Tspan11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945105,516,023 - 105,589,467 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366063,599,271 - 3,639,013 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366063,594,698 - 3,668,319 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11130,607,817 - 30,678,693 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1130,607,875 - 30,678,790 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660694,308,844 - 4,377,847 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624860581,951 - 617,163 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624860579,614 - 637,069 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TSPAN11
2983 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 1 5 2 19 1 3 3
Below cutoff 2 4

Sequence


RefSeq Acc Id: ENSSSCT00000000797   ⟹   ENSSSCP00000000781
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl566,853,404 - 66,911,569 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000038217   ⟹   ENSSSCP00000041614
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl566,867,386 - 66,910,888 (+)Ensembl
RefSeq Acc Id: XM_021092450   ⟹   XP_020948109
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1566,852,806 - 66,911,610 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092451   ⟹   XP_020948110
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1566,852,803 - 66,911,610 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092452   ⟹   XP_020948111
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1566,853,371 - 66,911,610 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092453   ⟹   XP_020948112
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1566,853,377 - 66,911,610 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020948110   ⟸   XM_021092451
- Peptide Label: isoform X2
- UniProtKB: A0A8D0QR35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020948109   ⟸   XM_021092450
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020948111   ⟸   XM_021092452
- Peptide Label: isoform X3
- UniProtKB: A0A4X1UNG9 (UniProtKB/TrEMBL),   A0A8D0M8V5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020948112   ⟸   XM_021092453
- Peptide Label: isoform X3
- UniProtKB: A0A4X1UNG9 (UniProtKB/TrEMBL),   A0A8D0M8V5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000000781   ⟸   ENSSSCT00000000797
RefSeq Acc Id: ENSSSCP00000041614   ⟸   ENSSSCT00000038217


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000734 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005046148 UniProtKB/TrEMBL
  ENSSSCG00015045399 UniProtKB/TrEMBL
  ENSSSCG00025006607 UniProtKB/TrEMBL
  ENSSSCG00030005671 UniProtKB/TrEMBL
  ENSSSCG00045027506 UniProtKB/TrEMBL
  ENSSSCG00050072305 UniProtKB/TrEMBL
  ENSSSCG00055014062 UniProtKB/TrEMBL
  ENSSSCG00060069523 UniProtKB/TrEMBL
  ENSSSCG00065024771 UniProtKB/TrEMBL
  ENSSSCG00070018223 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000797 ENTREZGENE
  ENSSSCT00000000797.5 UniProtKB/TrEMBL
  ENSSSCT00000038217.2 UniProtKB/TrEMBL
  ENSSSCT00005074777.1 UniProtKB/TrEMBL
  ENSSSCT00015060604.1 UniProtKB/TrEMBL
  ENSSSCT00025008732.1 UniProtKB/TrEMBL
  ENSSSCT00030007716.1 UniProtKB/TrEMBL
  ENSSSCT00045046836.1 UniProtKB/TrEMBL
  ENSSSCT00050098708.1 UniProtKB/TrEMBL
  ENSSSCT00055027741.1 UniProtKB/TrEMBL
  ENSSSCT00060094908.1 UniProtKB/TrEMBL
  ENSSSCT00065033093.1 UniProtKB/TrEMBL
  ENSSSCT00070035955.1 UniProtKB/TrEMBL
  ENSSSCT00070035961.1 UniProtKB/TrEMBL
  ENSSSCT00070035970.1 UniProtKB/TrEMBL
  ENSSSCT00070035976.1 UniProtKB/TrEMBL
  ENSSSCT00070035983.1 UniProtKB/TrEMBL
  ENSSSCT00070035988.1 UniProtKB/TrEMBL
  ENSSSCT00070035993.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
InterPro Tetraspanin UniProtKB/TrEMBL
  Tetraspanin/Peripherin UniProtKB/TrEMBL
  Tetraspanin_EC2_sf UniProtKB/TrEMBL
NCBI Gene TSPAN11 ENTREZGENE
PANTHER PTHR19282 UniProtKB/TrEMBL
  TETRASPANIN-11 UniProtKB/TrEMBL
Pfam Tetraspanin UniProtKB/TrEMBL
PIRSF Tetraspanin UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/TrEMBL
Superfamily-SCOP SSF48652 UniProtKB/TrEMBL
UniProt A0A287AC77_PIG UniProtKB/TrEMBL
  A0A4X1UN11_PIG UniProtKB/TrEMBL
  A0A4X1UN16_PIG UniProtKB/TrEMBL
  A0A4X1UN20_PIG UniProtKB/TrEMBL
  A0A4X1UNG9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0M8V5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QR35 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QJJ9_PIG UniProtKB/TrEMBL
  F1SKA6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94500 ENTREZGENE