TSPAN11 (tetraspanin 11) - Rat Genome Database

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Gene: TSPAN11 (tetraspanin 11) Canis lupus familiaris
Analyze
Symbol: TSPAN11
Name: tetraspanin 11
RGD ID: 12164842
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetraspanin-11; tetraspanin-11-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12741,478,505 - 41,521,229 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2741,477,938 - 41,517,173 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha275,161,461 - 5,236,303 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02741,804,050 - 41,878,861 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2741,803,552 - 41,878,843 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12741,741,365 - 41,816,167 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02741,716,360 - 41,791,138 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0274,521,780 - 4,596,612 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TSPAN11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12741,478,505 - 41,521,229 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2741,477,938 - 41,517,173 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha275,161,461 - 5,236,303 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02741,804,050 - 41,878,861 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2741,803,552 - 41,878,843 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12741,741,365 - 41,816,167 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02741,716,360 - 41,791,138 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0274,521,780 - 4,596,612 (-)NCBIUU_Cfam_GSD_1.0
TSPAN11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,926,748 - 31,016,502 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,926,428 - 30,996,602 (+)EnsemblGRCh38hg38GRCh38
GRCh371231,079,682 - 31,149,534 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361230,971,105 - 31,036,722 (+)NCBINCBI36Build 36hg18NCBI36
Celera1236,222,678 - 36,292,351 (+)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1230,844,681 - 30,914,774 (+)NCBIHuRef
CHM1_11231,044,883 - 31,114,476 (+)NCBICHM1_1
T2T-CHM13v2.01230,801,368 - 30,891,025 (+)NCBIT2T-CHM13v2.0
Tspan11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396127,864,585 - 127,930,940 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6127,864,552 - 127,930,940 (+)EnsemblGRCm39 Ensembl
GRCm386127,887,509 - 127,953,031 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6127,887,589 - 127,953,977 (+)EnsemblGRCm38mm10GRCm38
MGSCv376127,837,640 - 127,903,049 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366127,853,241 - 127,918,650 (+)NCBIMGSCv36mm8
Celera6129,562,702 - 129,626,037 (+)NCBICelera
Cytogenetic Map6F3NCBI
cM Map662.56NCBI
Tspan11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84162,424,327 - 162,491,653 (+)NCBIGRCr8
mRatBN7.24160,738,149 - 160,805,522 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4160,738,404 - 160,805,520 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4166,968,306 - 167,035,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04162,751,216 - 162,818,393 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04161,385,290 - 161,452,456 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04160,455,845 - 160,522,905 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4160,455,986 - 160,522,904 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04231,093,058 - 231,159,405 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44164,340,111 - 164,407,946 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14164,585,046 - 164,652,881 (+)NCBI
Celera4149,446,650 - 149,513,483 (+)NCBICelera
Cytogenetic Map4q42NCBI
TSPAN11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21065,789,252 - 65,859,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11265,782,194 - 65,855,580 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01255,283,377 - 55,358,044 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11257,914,874 - 57,957,465 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1257,919,656 - 57,985,438 (-)Ensemblpanpan1.1panPan2
Tspan11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945105,516,023 - 105,589,467 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366063,599,271 - 3,639,013 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366063,594,698 - 3,668,319 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl566,853,404 - 66,911,569 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1566,852,803 - 66,911,610 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,160,214 - 69,217,001 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSPAN11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11130,607,817 - 30,678,693 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1130,607,875 - 30,678,790 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660694,308,844 - 4,377,847 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624860581,951 - 617,163 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624860579,614 - 637,069 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TSPAN11
576 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 2 11 4 6 7 6 6
Low 4 3 11 6 2 6 6 5 4
Below cutoff 8

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022410914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038439288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038576488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038641795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002619951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002619952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005303293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005303294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005315338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005315339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005346401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005346402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005379737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005379738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005413903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005413904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005413905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000024520   ⟹   ENSCAFP00000022762
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2741,477,938 - 41,517,173 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000039596   ⟹   ENSCAFP00000035468
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2741,478,471 - 41,511,426 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000066690   ⟹   ENSCAFP00000058078
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2741,477,938 - 41,511,028 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074209   ⟹   ENSCAFP00000062527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2741,477,938 - 41,517,173 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042250   ⟹   ENSCAFP00845033125
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2741,803,552 - 41,878,843 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042330   ⟹   ENSCAFP00845033185
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2741,804,028 - 41,869,053 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042403   ⟹   ENSCAFP00845033245
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2741,804,028 - 41,868,655 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042468   ⟹   ENSCAFP00845033292
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2741,804,086 - 41,878,843 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042525   ⟹   ENSCAFP00845033334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2741,836,099 - 41,868,278 (+)Ensembl
RefSeq Acc Id: XM_038439282   ⟹   XP_038295210
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02741,804,050 - 41,869,576 (+)NCBI
RefSeq Acc Id: XM_038439283   ⟹   XP_038295211
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02741,804,050 - 41,869,576 (+)NCBI
RefSeq Acc Id: XM_038439284   ⟹   XP_038295212
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02741,804,050 - 41,869,201 (+)NCBI
RefSeq Acc Id: XM_038439285   ⟹   XP_038295213
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02741,804,050 - 41,878,861 (+)NCBI
RefSeq Acc Id: XM_038439286   ⟹   XP_038295214
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02741,804,050 - 41,878,861 (+)NCBI
RefSeq Acc Id: XM_038439287   ⟹   XP_038295215
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02741,804,050 - 41,869,029 (+)NCBI
RefSeq Acc Id: XM_038439288   ⟹   XP_038295216
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02741,804,050 - 41,869,144 (+)NCBI
RefSeq Acc Id: XM_038459698   ⟹   XP_038315626
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha275,170,747 - 5,236,303 (-)NCBI
RefSeq Acc Id: XM_038459699   ⟹   XP_038315627
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha275,170,747 - 5,236,303 (-)NCBI
RefSeq Acc Id: XM_038459700   ⟹   XP_038315628
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha275,171,129 - 5,236,303 (-)NCBI
RefSeq Acc Id: XM_038459701   ⟹   XP_038315629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha275,161,461 - 5,236,303 (-)NCBI
RefSeq Acc Id: XM_038459702   ⟹   XP_038315630
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha275,161,461 - 5,236,303 (-)NCBI
RefSeq Acc Id: XM_038459703   ⟹   XP_038315631
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha275,171,294 - 5,236,303 (-)NCBI
RefSeq Acc Id: XM_038459704   ⟹   XP_038315632
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha275,171,179 - 5,236,303 (-)NCBI
RefSeq Acc Id: XM_038513951   ⟹   XP_038369879
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12741,741,365 - 41,806,882 (+)NCBI
RefSeq Acc Id: XM_038513952   ⟹   XP_038369880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12741,741,365 - 41,806,882 (+)NCBI
RefSeq Acc Id: XM_038513953   ⟹   XP_038369881
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12741,741,365 - 41,806,507 (+)NCBI
RefSeq Acc Id: XM_038513954   ⟹   XP_038369882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12741,741,365 - 41,816,167 (+)NCBI
RefSeq Acc Id: XM_038513955   ⟹   XP_038369883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12741,741,365 - 41,816,167 (+)NCBI
RefSeq Acc Id: XM_038513956   ⟹   XP_038369884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12741,741,365 - 41,806,335 (+)NCBI
RefSeq Acc Id: XM_038513957   ⟹   XP_038369885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12741,741,365 - 41,806,450 (+)NCBI
RefSeq Acc Id: XM_038576482   ⟹   XP_038432410
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0274,531,066 - 4,596,612 (-)NCBI
RefSeq Acc Id: XM_038576483   ⟹   XP_038432411
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0274,531,066 - 4,596,612 (-)NCBI
RefSeq Acc Id: XM_038576484   ⟹   XP_038432412
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0274,531,448 - 4,596,612 (-)NCBI
RefSeq Acc Id: XM_038576485   ⟹   XP_038432413
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0274,521,780 - 4,596,612 (-)NCBI
RefSeq Acc Id: XM_038576486   ⟹   XP_038432414
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0274,521,780 - 4,596,612 (-)NCBI
RefSeq Acc Id: XM_038576487   ⟹   XP_038432415
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0274,531,612 - 4,596,612 (-)NCBI
RefSeq Acc Id: XM_038576488   ⟹   XP_038432416
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0274,531,503 - 4,596,612 (-)NCBI
RefSeq Acc Id: XM_038641788   ⟹   XP_038497716
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02741,716,360 - 41,781,852 (+)NCBI
RefSeq Acc Id: XM_038641789   ⟹   XP_038497717
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02741,716,360 - 41,781,852 (+)NCBI
RefSeq Acc Id: XM_038641790   ⟹   XP_038497718
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02741,716,360 - 41,781,477 (+)NCBI
RefSeq Acc Id: XM_038641791   ⟹   XP_038497719
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02741,716,360 - 41,791,138 (+)NCBI
RefSeq Acc Id: XM_038641792   ⟹   XP_038497720
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02741,716,360 - 41,791,138 (+)NCBI
RefSeq Acc Id: XM_038641793   ⟹   XP_038497721
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02741,716,360 - 41,781,310 (+)NCBI
RefSeq Acc Id: XM_038641795   ⟹   XP_038497723
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02741,716,360 - 41,781,415 (+)NCBI
RefSeq Acc Id: XR_005303293
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02741,804,050 - 41,874,521 (+)NCBI
RefSeq Acc Id: XR_005303294
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02741,804,050 - 41,868,978 (+)NCBI
RefSeq Acc Id: XR_005315338
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha275,161,461 - 5,236,303 (-)NCBI
RefSeq Acc Id: XR_005315339
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha275,171,345 - 5,236,303 (-)NCBI
RefSeq Acc Id: XR_005346401
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12741,741,365 - 41,811,827 (+)NCBI
RefSeq Acc Id: XR_005346402
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12741,741,365 - 41,806,284 (+)NCBI
RefSeq Acc Id: XR_005379737
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0274,521,780 - 4,596,612 (-)NCBI
RefSeq Acc Id: XR_005379738
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0274,531,663 - 4,596,612 (-)NCBI
RefSeq Acc Id: XR_005413903
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02741,716,360 - 41,786,798 (+)NCBI
RefSeq Acc Id: XR_005413904
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02741,716,360 - 41,781,262 (+)NCBI
RefSeq Acc Id: XR_005413905
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02741,716,360 - 41,781,297 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038295210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038295211 (Get FASTA)   NCBI Sequence Viewer  
  XP_038295212 (Get FASTA)   NCBI Sequence Viewer  
  XP_038295213 (Get FASTA)   NCBI Sequence Viewer  
  XP_038295214 (Get FASTA)   NCBI Sequence Viewer  
  XP_038295215 (Get FASTA)   NCBI Sequence Viewer  
  XP_038295216 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315626 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315627 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315628 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315629 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315630 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315631 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315632 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369879 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369880 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369881 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369882 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369883 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369884 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369885 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432410 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432411 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432412 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432413 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432414 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432415 (Get FASTA)   NCBI Sequence Viewer  
  XP_038432416 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497716 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497717 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497718 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497719 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497720 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497721 (Get FASTA)   NCBI Sequence Viewer  
  XP_038497723 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000022762.4
  ENSCAFP00000035468.4
  ENSCAFP00000058078.2
  ENSCAFP00000062527.2
  ENSCAFP00030041613.1
  ENSCAFP00030041632.1
  ENSCAFP00030041658.1
  ENSCAFP00040039276.1
  ENSCAFP00040039286.1
  ENSCAFP00040039303.1
  ENSCAFP00845033125.1
  ENSCAFP00845033185
  ENSCAFP00845033185.1
  ENSCAFP00845033245
  ENSCAFP00845033245.1
  ENSCAFP00845033292
  ENSCAFP00845033292.1
  ENSCAFP00845033334.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000035468   ⟸   ENSCAFT00000039596
RefSeq Acc Id: ENSCAFP00000062527   ⟸   ENSCAFT00000074209
RefSeq Acc Id: ENSCAFP00000022762   ⟸   ENSCAFT00000024520
RefSeq Acc Id: ENSCAFP00000058078   ⟸   ENSCAFT00000066690
RefSeq Acc Id: XP_038369883   ⟸   XM_038513955
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038369882   ⟸   XM_038513954
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038369879   ⟸   XM_038513951
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038369880   ⟸   XM_038513952
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038369881   ⟸   XM_038513953
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038369885   ⟸   XM_038513957
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038369884   ⟸   XM_038513956
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038497720   ⟸   XM_038641792
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038497719   ⟸   XM_038641791
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038497716   ⟸   XM_038641788
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038497717   ⟸   XM_038641789
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038497718   ⟸   XM_038641790
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038497723   ⟸   XM_038641795
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038497721   ⟸   XM_038641793
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038295214   ⟸   XM_038439286
- Peptide Label: isoform X5
- UniProtKB: A0A8C0KQB3 (UniProtKB/TrEMBL),   A0A8C0TR32 (UniProtKB/TrEMBL),   A0A8I3PLE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295213   ⟸   XM_038439285
- Peptide Label: isoform X4
- UniProtKB: A0A8C0KQI3 (UniProtKB/TrEMBL),   A0A8I3PZS3 (UniProtKB/TrEMBL),   A0A8C0TRG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295210   ⟸   XM_038439282
- Peptide Label: isoform X1
- UniProtKB: A0A8P0NGS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295211   ⟸   XM_038439283
- Peptide Label: isoform X2
- UniProtKB: A0A8P0NGS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295212   ⟸   XM_038439284
- Peptide Label: isoform X3
- UniProtKB: A0A8C0TM00 (UniProtKB/TrEMBL),   A0A8I3PL95 (UniProtKB/TrEMBL),   A0A8C0TR32 (UniProtKB/TrEMBL),   A0A8I3PLE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295216   ⟸   XM_038439288
- Peptide Label: isoform X5
- UniProtKB: A0A8C0KQB3 (UniProtKB/TrEMBL),   A0A8C0TR32 (UniProtKB/TrEMBL),   A0A8I3PLE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038295215   ⟸   XM_038439287
- Peptide Label: isoform X5
- UniProtKB: A0A8C0KQB3 (UniProtKB/TrEMBL),   A0A8C0TR32 (UniProtKB/TrEMBL),   A0A8I3PLE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315629   ⟸   XM_038459701
- Peptide Label: isoform X4
- UniProtKB: A0A8C0KQI3 (UniProtKB/TrEMBL),   A0A8I3PZS3 (UniProtKB/TrEMBL),   A0A8C0TRG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315630   ⟸   XM_038459702
- Peptide Label: isoform X5
- UniProtKB: A0A8C0KQB3 (UniProtKB/TrEMBL),   A0A8C0TR32 (UniProtKB/TrEMBL),   A0A8I3PLE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315627   ⟸   XM_038459699
- Peptide Label: isoform X9
- UniProtKB: A0A8P0NGS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315626   ⟸   XM_038459698
- Peptide Label: isoform X8
- UniProtKB: A0A8P0NGS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315628   ⟸   XM_038459700
- Peptide Label: isoform X3
- UniProtKB: A0A8C0TM00 (UniProtKB/TrEMBL),   A0A8I3PL95 (UniProtKB/TrEMBL),   A0A8C0TR32 (UniProtKB/TrEMBL),   A0A8I3PLE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315632   ⟸   XM_038459704
- Peptide Label: isoform X5
- UniProtKB: A0A8C0KQB3 (UniProtKB/TrEMBL),   A0A8C0TR32 (UniProtKB/TrEMBL),   A0A8I3PLE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315631   ⟸   XM_038459703
- Peptide Label: isoform X5
- UniProtKB: A0A8C0KQB3 (UniProtKB/TrEMBL),   A0A8C0TR32 (UniProtKB/TrEMBL),   A0A8I3PLE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432413   ⟸   XM_038576485
- Peptide Label: isoform X4
- UniProtKB: A0A8C0KQI3 (UniProtKB/TrEMBL),   A0A8C0TRG2 (UniProtKB/TrEMBL),   A0A8I3PZS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432414   ⟸   XM_038576486
- Peptide Label: isoform X5
- UniProtKB: A0A8C0KQB3 (UniProtKB/TrEMBL),   A0A8C0TR32 (UniProtKB/TrEMBL),   A0A8I3PLE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432411   ⟸   XM_038576483
- Peptide Label: isoform X2
- UniProtKB: A0A8P0NGS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432410   ⟸   XM_038576482
- Peptide Label: isoform X1
- UniProtKB: A0A8P0NGS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432412   ⟸   XM_038576484
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PH63 (UniProtKB/TrEMBL),   A0A8C0TR32 (UniProtKB/TrEMBL),   A0A8I3PLE2 (UniProtKB/TrEMBL),   A0A8C0KNP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432416   ⟸   XM_038576488
- Peptide Label: isoform X5
- UniProtKB: A0A8C0KQB3 (UniProtKB/TrEMBL),   A0A8C0TR32 (UniProtKB/TrEMBL),   A0A8I3PLE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432415   ⟸   XM_038576487
- Peptide Label: isoform X5
- UniProtKB: A0A8C0KQB3 (UniProtKB/TrEMBL),   A0A8C0TR32 (UniProtKB/TrEMBL),   A0A8I3PLE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845033125   ⟸   ENSCAFT00845042250
RefSeq Acc Id: ENSCAFP00845033292   ⟸   ENSCAFT00845042468
RefSeq Acc Id: ENSCAFP00845033245   ⟸   ENSCAFT00845042403
RefSeq Acc Id: ENSCAFP00845033185   ⟸   ENSCAFT00845042330
RefSeq Acc Id: ENSCAFP00845033334   ⟸   ENSCAFT00845042525


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015457 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025781 UniProtKB/TrEMBL
  ENSCAFG00040024126 UniProtKB/TrEMBL
  ENSCAFG00845023924 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000024520.4 UniProtKB/TrEMBL
  ENSCAFT00000039596.5 UniProtKB/TrEMBL
  ENSCAFT00000066690.2 UniProtKB/TrEMBL
  ENSCAFT00000074209.2 UniProtKB/TrEMBL
  ENSCAFT00030047590.1 UniProtKB/TrEMBL
  ENSCAFT00030047610.1 UniProtKB/TrEMBL
  ENSCAFT00030047639.1 UniProtKB/TrEMBL
  ENSCAFT00040044952.1 UniProtKB/TrEMBL
  ENSCAFT00040044965.1 UniProtKB/TrEMBL
  ENSCAFT00040044983.1 UniProtKB/TrEMBL
  ENSCAFT00845042250.1 UniProtKB/TrEMBL
  ENSCAFT00845042330 ENTREZGENE
  ENSCAFT00845042330.1 UniProtKB/TrEMBL
  ENSCAFT00845042403 ENTREZGENE
  ENSCAFT00845042403.1 UniProtKB/TrEMBL
  ENSCAFT00845042468 ENTREZGENE
  ENSCAFT00845042468.1 UniProtKB/TrEMBL
  ENSCAFT00845042525.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
InterPro Tetraspanin/Peripherin UniProtKB/TrEMBL
  Tetraspanin_animals UniProtKB/TrEMBL
  Tetraspanin_EC2_sf UniProtKB/TrEMBL
NCBI Gene TSPAN11 ENTREZGENE
PANTHER PTHR19282 UniProtKB/TrEMBL
  TETRASPANIN-11 UniProtKB/TrEMBL
Pfam Tetraspanin UniProtKB/TrEMBL
PIRSF Tetraspanin UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/TrEMBL
Superfamily-SCOP SSF48652 UniProtKB/TrEMBL
UniProt A0A8C0KNP5 ENTREZGENE
  A0A8C0KQB3 ENTREZGENE
  A0A8C0KQI3 ENTREZGENE
  A0A8C0PH63 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TM00 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TR32 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TRG2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PL45_CANLF UniProtKB/TrEMBL
  A0A8I3PL95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PLE2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PQL1_CANLF UniProtKB/TrEMBL
  A0A8I3PZS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NGS7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PBG5_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:47911 ENTREZGENE