LOC103231004 (histone H3.3A) - Rat Genome Database

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Gene: LOC103231004 (histone H3.3A) Chlorocebus sabaeus
Analyze
Symbol: LOC103231004
Name: histone H3.3A
RGD ID: 18624766
Description: ENCODES a protein that exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); RNA polymerase II core promoter sequence-specific DNA binding (ortholog); INVOLVED IN cell population proliferation (ortholog); multicellular organism growth (ortholog); muscle cell differentiation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); bone giant cell tumor (ortholog); Brain Neoplasms (ortholog); FOUND IN Barr body (ortholog); chromatin (ortholog); chromosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: H3 histone, family 3A; H3F3A; histone H3.3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,696,153 - 3,704,886 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660553,710,525 - 3,719,740 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC103231004
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,696,153 - 3,704,886 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660553,710,525 - 3,719,740 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
H3-3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,061,831 - 226,072,019 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1226,061,851 - 226,072,019 (+)EnsemblGRCh38hg38GRCh38
GRCh371226,249,532 - 226,259,720 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,317,044 - 224,326,326 (+)NCBINCBI36Build 36hg18NCBI36
Build 341222,557,155 - 222,566,437NCBI
Celera1199,441,492 - 199,450,772 (+)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1196,767,611 - 196,776,906 (+)NCBIHuRef
CHM1_11227,523,171 - 227,532,463 (+)NCBICHM1_1
T2T-CHM13v2.01225,249,743 - 225,259,926 (+)NCBIT2T-CHM13v2.0
H3f3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,630,125 - 180,641,127 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,628,397 - 180,641,508 (-)EnsemblGRCm39 Ensembl
GRCm381180,802,560 - 180,813,605 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,800,832 - 180,813,943 (-)EnsemblGRCm38mm10GRCm38
MGSCv371182,732,699 - 182,743,734 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,639,243 - 182,650,278 (-)NCBIMGSCv36mm8
Celera1187,865,754 - 187,875,189 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.46NCBI
H3f3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,065,085 - 95,076,695 (-)NCBIGRCr8
mRatBN7.21392,533,289 - 92,544,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,533,298 - 92,544,908 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1395,038,631 - 95,050,244 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,438,557 - 96,450,171 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,613,252 - 93,624,861 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,091,246 - 99,102,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,091,763 - 99,101,208 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013104,089,831 - 104,101,413 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,539,599 - 96,551,198 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1392,078,421 - 92,090,028 (-)NCBICelera
Cytogenetic Map13q26NCBI
H3f3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955489269,900 - 278,398 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955489269,900 - 278,398 (+)NCBIChiLan1.0ChiLan1.0
LOC100970414
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2123,465,745 - 23,475,101 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1123,414,316 - 23,423,689 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01201,523,670 - 201,533,005 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11206,520,107 - 206,529,447 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1206,520,109 - 206,529,447 (+)Ensemblpanpan1.1panPan2
H3-3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,797,168 - 38,805,417 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl738,797,448 - 38,805,416 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,277,490 - 38,285,800 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,630,568 - 38,638,918 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl738,630,568 - 38,638,856 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1738,469,231 - 38,477,538 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,475,684 - 38,485,703 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,747,035 - 38,755,357 (-)NCBIUU_Cfam_GSD_1.0
LOC101963041
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,904,969 - 51,912,269 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365262,835,002 - 2,842,328 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H3-3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1013,923,077 - 13,948,484 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11013,939,938 - 13,947,976 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21015,839,603 - 15,846,067 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC101699418
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624807194,372 - 203,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007990155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_007990155   ⟹   XP_007988346
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1253,696,153 - 3,704,886 (-)NCBI
Vero_WHO_p1.0NW_0236660553,710,525 - 3,719,740 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007988346 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_007988346   ⟸   XM_007990155
- UniProtKB: A0A0D9QXU6 (UniProtKB/TrEMBL),   A0A0D9RI14 (UniProtKB/TrEMBL),   A0A0D9SDP1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
NCBI Gene H3F3A ENTREZGENE
UniProt A0A0D9QXU6 ENTREZGENE
  A0A0D9RI14 ENTREZGENE
  A0A0D9SDP1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103231004  histone H3.3A  H3F3A  H3 histone, family 3A  Symbol and/or name change 5135510 APPROVED