BICRAL (BICRA like chromatin remodeling complex associated protein) - Rat Genome Database

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Gene: BICRAL (BICRA like chromatin remodeling complex associated protein) Chlorocebus sabaeus
Analyze
Symbol: BICRAL
Name: BICRA like chromatin remodeling complex associated protein
RGD ID: 18622202
Description: INVOLVED IN positive regulation of DNA-templated transcription (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); infantile Refsum disease (ortholog); FOUND IN SWI/SNF complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BRD4 interacting chromatin remodeling complex associated protein like; BRD4 interacting chromatin remodelling complex associated protein like; BRD4-interacting chromatin-remodeling complex-associated protein-like; GLTSCR1 like; GLTSCR1-like protein; GLTSCR1L
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11729,283,287 - 29,402,201 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1729,283,150 - 29,331,259 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604442,782,889 - 42,905,000 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BICRAL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11729,283,287 - 29,402,201 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1729,283,150 - 29,331,259 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604442,782,889 - 42,905,000 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
BICRAL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38642,746,339 - 42,868,556 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl642,782,052 - 42,868,558 (+)EnsemblGRCh38hg38GRCh38
GRCh37642,714,725 - 42,836,294 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36642,896,772 - 42,944,274 (+)NCBINCBI36Build 36hg18NCBI36
Celera644,341,061 - 44,388,560 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef642,506,828 - 42,553,996 (+)NCBIHuRef
CHM1_1642,791,270 - 42,838,765 (+)NCBICHM1_1
T2T-CHM13v2.0642,575,724 - 42,697,274 (+)NCBIT2T-CHM13v2.0
Bicral
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391747,109,046 - 47,201,329 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1747,109,046 - 47,169,408 (-)EnsemblGRCm39 Ensembl
GRCm381746,798,116 - 46,890,442 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,798,120 - 46,858,482 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,935,065 - 46,968,362 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361746,261,307 - 46,351,027 (-)NCBIMGSCv36mm8
Celera1750,234,333 - 50,267,695 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
Bicral
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8921,597,886 - 21,682,985 (+)NCBIGRCr8
mRatBN7.2914,100,253 - 14,185,368 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,154,209 - 14,183,671 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx922,736,059 - 22,765,623 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0927,799,500 - 27,829,255 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,099,428 - 26,128,995 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0916,406,577 - 16,495,751 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,302,578 - 16,494,054 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0915,369,213 - 15,403,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.499,349,439 - 9,379,804 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.199,346,890 - 9,375,934 (+)NCBI
Celera911,902,331 - 11,931,773 (+)NCBICelera
Cytogenetic Map9q12NCBI
Bicral
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,854,563 - 8,897,684 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554378,841,830 - 8,896,391 (+)NCBIChiLan1.0ChiLan1.0
BICRAL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2557,244,633 - 57,365,860 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,114,629 - 53,235,867 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0642,338,441 - 42,457,989 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1643,695,490 - 43,753,013 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl643,695,491 - 43,756,892 (+)Ensemblpanpan1.1panPan2
BICRAL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,358,790 - 11,436,002 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,358,650 - 11,435,112 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1211,386,001 - 11,465,323 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01211,840,378 - 11,919,715 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1211,840,351 - 11,919,558 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11211,368,304 - 11,447,607 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01211,452,731 - 11,531,917 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01211,546,642 - 11,625,934 (+)NCBIUU_Cfam_GSD_1.0
Bicral
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494646,843,637 - 46,922,609 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647617,040,595 - 17,081,141 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647617,037,595 - 17,111,786 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICRAL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl737,824,242 - 37,933,593 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1737,852,153 - 37,933,599 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2743,329,942 - 43,381,970 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Bicral
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,578,918 - 16,619,993 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,578,801 - 16,621,225 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 32
Low 16 20 28
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000009557   ⟹   ENSCSAP00000007669
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1729,283,150 - 29,331,259 (-)Ensembl
RefSeq Acc Id: XM_007972541   ⟹   XP_007970732
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11729,283,287 - 29,402,201 (-)NCBI
Vero_WHO_p1.0NW_02366604442,782,889 - 42,905,000 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007972542   ⟹   XP_007970733
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11729,283,287 - 29,402,201 (-)NCBI
Vero_WHO_p1.0NW_02366604442,782,889 - 42,905,000 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038006101   ⟹   XP_037862029
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604442,820,152 - 42,905,000 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007970732 (Get FASTA)   NCBI Sequence Viewer  
  XP_007970733 (Get FASTA)   NCBI Sequence Viewer  
  XP_037862029 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000007669.1
Reference Protein Sequences
RefSeq Acc Id: XP_007970732   ⟸   XM_007972541
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RGD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007970733   ⟸   XM_007972542
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RGD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000007669   ⟸   ENSCSAT00000009557
RefSeq Acc Id: XP_037862029   ⟸   XM_038006101
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011469 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009557.1 UniProtKB/TrEMBL
InterPro GSCR1_dom UniProtKB/TrEMBL
KEGG Report csab:103221490 UniProtKB/TrEMBL
NCBI Gene BICRAL ENTREZGENE
PANTHER GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1 UniProtKB/TrEMBL
  PTHR15572:SF2 UniProtKB/TrEMBL
Pfam GLTSCR1 UniProtKB/TrEMBL
UniProt A0A0D9RGD0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-07-13 BICRAL  BICRA like chromatin remodeling complex associated protein  BICRAL  BRD4 interacting chromatin remodeling complex associated protein like  Symbol and/or name change 5135510 APPROVED