BICRAL (BICRA like chromatin remodeling complex associated protein) - Rat Genome Database

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Gene: BICRAL (BICRA like chromatin remodeling complex associated protein) Sus scrofa
Analyze
Symbol: BICRAL
Name: BICRA like chromatin remodeling complex associated protein
RGD ID: 14059599
Description: INVOLVED IN positive regulation of DNA-templated transcription (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); infantile Refsum disease (ortholog); prostate cancer (ortholog); FOUND IN SWI/SNF complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BRD4 interacting chromatin remodeling complex associated protein like; BRD4 interacting chromatin remodelling complex associated protein like; GLTSCR1 like; GLTSCR1-like protein; GLTSCR1L
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl737,824,242 - 37,933,593 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1737,852,153 - 37,933,599 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2743,329,942 - 43,381,970 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
SWI/SNF complex  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BICRAL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl737,824,242 - 37,933,593 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1737,852,153 - 37,933,599 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2743,329,942 - 43,381,970 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BICRAL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38642,746,339 - 42,868,556 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl642,782,052 - 42,868,558 (+)EnsemblGRCh38hg38GRCh38
GRCh37642,714,725 - 42,836,294 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36642,896,772 - 42,944,274 (+)NCBINCBI36Build 36hg18NCBI36
Celera644,341,061 - 44,388,560 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef642,506,828 - 42,553,996 (+)NCBIHuRef
CHM1_1642,791,270 - 42,838,765 (+)NCBICHM1_1
T2T-CHM13v2.0642,575,724 - 42,697,274 (+)NCBIT2T-CHM13v2.0
Bicral
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391747,109,046 - 47,201,329 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1747,109,046 - 47,169,408 (-)EnsemblGRCm39 Ensembl
GRCm381746,798,116 - 46,890,442 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,798,120 - 46,858,482 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,935,065 - 46,968,362 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361746,261,307 - 46,351,027 (-)NCBIMGSCv36mm8
Celera1750,234,333 - 50,267,695 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
Bicral
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8921,597,886 - 21,682,985 (+)NCBIGRCr8
mRatBN7.2914,100,253 - 14,185,368 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,154,209 - 14,183,671 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx922,736,059 - 22,765,623 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0927,799,500 - 27,829,255 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,099,428 - 26,128,995 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0916,406,577 - 16,495,751 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,302,578 - 16,494,054 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0915,369,213 - 15,403,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.499,349,439 - 9,379,804 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.199,346,890 - 9,375,934 (+)NCBI
Celera911,902,331 - 11,931,773 (+)NCBICelera
Cytogenetic Map9q12NCBI
Bicral
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,854,563 - 8,897,684 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554378,841,830 - 8,896,391 (+)NCBIChiLan1.0ChiLan1.0
BICRAL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2557,244,633 - 57,365,860 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,114,629 - 53,235,867 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0642,338,441 - 42,457,989 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1643,695,490 - 43,753,013 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl643,695,491 - 43,756,892 (+)Ensemblpanpan1.1panPan2
BICRAL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,358,790 - 11,436,002 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,358,650 - 11,435,112 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1211,386,001 - 11,465,323 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01211,840,378 - 11,919,715 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1211,840,351 - 11,919,558 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11211,368,304 - 11,447,607 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01211,452,731 - 11,531,917 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01211,546,642 - 11,625,934 (+)NCBIUU_Cfam_GSD_1.0
Bicral
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494646,843,637 - 46,922,609 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647617,040,595 - 17,081,141 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647617,037,595 - 17,111,786 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICRAL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11729,283,287 - 29,402,201 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1729,283,150 - 29,331,259 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604442,782,889 - 42,905,000 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bicral
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,578,918 - 16,619,993 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,578,801 - 16,621,225 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BICRAL
1994 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 10 4 3 5 2 21 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000001830   ⟹   ENSSSCP00000001784
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl737,824,242 - 37,933,593 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000037067   ⟹   ENSSSCP00000051442
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl737,853,433 - 37,933,592 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044198   ⟹   ENSSSCP00000052375
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl737,853,074 - 37,933,593 (+)Ensembl
RefSeq Acc Id: XM_003356632   ⟹   XP_003356680
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1737,895,552 - 37,933,599 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098728   ⟹   XP_020954387
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1737,852,153 - 37,933,599 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098729   ⟹   XP_020954388
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1737,852,153 - 37,933,599 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098730   ⟹   XP_020954389
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1737,860,638 - 37,933,599 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098731   ⟹   XP_020954390
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1737,860,638 - 37,933,599 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003356680 (Get FASTA)   NCBI Sequence Viewer  
  XP_020954387 (Get FASTA)   NCBI Sequence Viewer  
  XP_020954388 (Get FASTA)   NCBI Sequence Viewer  
  XP_020954389 (Get FASTA)   NCBI Sequence Viewer  
  XP_020954390 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAN13161 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000001784
  ENSSSCP00000001784.4
  ENSSSCP00000051442.1
  ENSSSCP00000052375
  ENSSSCP00000052375.2
  ENSSSCP00005039354.1
  ENSSSCP00005039421.1
  ENSSSCP00005039443.1
  ENSSSCP00005039454.1
  ENSSSCP00005039460.1
  ENSSSCP00005039465.1
  ENSSSCP00005039481.1
  ENSSSCP00015022591.1
  ENSSSCP00015022605.1
  ENSSSCP00015022616.1
  ENSSSCP00025026224.1
  ENSSSCP00025026278.1
  ENSSSCP00025026364.1
  ENSSSCP00025026443.1
  ENSSSCP00030040199.1
  ENSSSCP00030040214.1
  ENSSSCP00035018578.1
  ENSSSCP00035018579.1
  ENSSSCP00035018580.1
  ENSSSCP00035018583.1
  ENSSSCP00035018585.1
  ENSSSCP00035018588.1
  ENSSSCP00040022362.1
  ENSSSCP00040022443.1
  ENSSSCP00040022498.1
  ENSSSCP00040022526.1
  ENSSSCP00040022579.1
  ENSSSCP00045008052.1
  ENSSSCP00045008074.1
  ENSSSCP00045008090.1
  ENSSSCP00050002599.1
  ENSSSCP00050002601.1
  ENSSSCP00055025919.1
  ENSSSCP00055025973.1
  ENSSSCP00055026044.1
  ENSSSCP00055026074.1
  ENSSSCP00060037016.1
  ENSSSCP00060037031.1
  ENSSSCP00065049498.1
  ENSSSCP00065049499.1
  ENSSSCP00065049500.1
  ENSSSCP00065049501.1
  ENSSSCP00065049502.1
  ENSSSCP00065049504.1
  ENSSSCP00070000949.1
  ENSSSCP00070000960.1
Reference Protein Sequences
RefSeq Acc Id: XP_020954388   ⟸   XM_021098729
- UniProtKB: A0A8D1EG31 (UniProtKB/TrEMBL),   F1RU59 (UniProtKB/TrEMBL),   A0A480VRZ8 (UniProtKB/TrEMBL),   A0A8D0ZHN8 (UniProtKB/TrEMBL),   A0A8D1KB66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954387   ⟸   XM_021098728
- UniProtKB: A0A8D1EG31 (UniProtKB/TrEMBL),   F1RU59 (UniProtKB/TrEMBL),   A0A480VRZ8 (UniProtKB/TrEMBL),   A0A8D0ZHN8 (UniProtKB/TrEMBL),   A0A8D1KB66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954389   ⟸   XM_021098730
- UniProtKB: A0A8D1EG31 (UniProtKB/TrEMBL),   F1RU59 (UniProtKB/TrEMBL),   A0A480VRZ8 (UniProtKB/TrEMBL),   A0A8D0ZHN8 (UniProtKB/TrEMBL),   A0A8D1KB66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954390   ⟸   XM_021098731
- UniProtKB: A0A8D1EG31 (UniProtKB/TrEMBL),   F1RU59 (UniProtKB/TrEMBL),   A0A480VRZ8 (UniProtKB/TrEMBL),   A0A8D0ZHN8 (UniProtKB/TrEMBL),   A0A8D1KB66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003356680   ⟸   XM_003356632
- UniProtKB: F1RU59 (UniProtKB/TrEMBL),   A0A8D1EG31 (UniProtKB/TrEMBL),   A0A480VRZ8 (UniProtKB/TrEMBL),   A0A8D0ZHN8 (UniProtKB/TrEMBL),   A0A8D1KB66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000052375   ⟸   ENSSSCT00000044198
RefSeq Acc Id: ENSSSCP00000001784   ⟸   ENSSSCT00000001830
RefSeq Acc Id: ENSSSCP00000051442   ⟸   ENSSSCT00000037067
Protein Domains
GLTSCR protein conserved


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001646 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005039835 UniProtKB/TrEMBL
  ENSSSCG00015042241 UniProtKB/TrEMBL
  ENSSSCG00025045488 UniProtKB/TrEMBL
  ENSSSCG00030062262 UniProtKB/TrEMBL
  ENSSSCG00035035080 UniProtKB/TrEMBL
  ENSSSCG00040040157 UniProtKB/TrEMBL
  ENSSSCG00045007143 UniProtKB/TrEMBL
  ENSSSCG00050004315 UniProtKB/TrEMBL
  ENSSSCG00055016463 UniProtKB/TrEMBL
  ENSSSCG00060062748 UniProtKB/TrEMBL
  ENSSSCG00065079155 UniProtKB/TrEMBL
  ENSSSCG00070000579 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001830 ENTREZGENE
  ENSSSCT00000001830.5 UniProtKB/TrEMBL
  ENSSSCT00000037067.3 UniProtKB/TrEMBL
  ENSSSCT00000044198 ENTREZGENE
  ENSSSCT00000044198.2 UniProtKB/TrEMBL
  ENSSSCT00005063692.1 UniProtKB/TrEMBL
  ENSSSCT00005063806.1 UniProtKB/TrEMBL
  ENSSSCT00005063841.1 UniProtKB/TrEMBL
  ENSSSCT00005063856.1 UniProtKB/TrEMBL
  ENSSSCT00005063866.1 UniProtKB/TrEMBL
  ENSSSCT00005063875.1 UniProtKB/TrEMBL
  ENSSSCT00005063899.1 UniProtKB/TrEMBL
  ENSSSCT00015056336.1 UniProtKB/TrEMBL
  ENSSSCT00015056388.1 UniProtKB/TrEMBL
  ENSSSCT00015056417.1 UniProtKB/TrEMBL
  ENSSSCT00025061749.1 UniProtKB/TrEMBL
  ENSSSCT00025061887.1 UniProtKB/TrEMBL
  ENSSSCT00025062088.1 UniProtKB/TrEMBL
  ENSSSCT00025062256.1 UniProtKB/TrEMBL
  ENSSSCT00030087092.1 UniProtKB/TrEMBL
  ENSSSCT00030087115.1 UniProtKB/TrEMBL
  ENSSSCT00035046480.1 UniProtKB/TrEMBL
  ENSSSCT00035046482.1 UniProtKB/TrEMBL
  ENSSSCT00035046484.1 UniProtKB/TrEMBL
  ENSSSCT00035046489.1 UniProtKB/TrEMBL
  ENSSSCT00035046493.1 UniProtKB/TrEMBL
  ENSSSCT00035046497.1 UniProtKB/TrEMBL
  ENSSSCT00040053693.1 UniProtKB/TrEMBL
  ENSSSCT00040053885.1 UniProtKB/TrEMBL
  ENSSSCT00040054010.1 UniProtKB/TrEMBL
  ENSSSCT00040054118.1 UniProtKB/TrEMBL
  ENSSSCT00040054270.1 UniProtKB/TrEMBL
  ENSSSCT00045011849.1 UniProtKB/TrEMBL
  ENSSSCT00045011880.1 UniProtKB/TrEMBL
  ENSSSCT00045011903.1 UniProtKB/TrEMBL
  ENSSSCT00050005955.1 UniProtKB/TrEMBL
  ENSSSCT00050005959.1 UniProtKB/TrEMBL
  ENSSSCT00055032530.1 UniProtKB/TrEMBL
  ENSSSCT00055032611.1 UniProtKB/TrEMBL
  ENSSSCT00055032694.1 UniProtKB/TrEMBL
  ENSSSCT00055032732.1 UniProtKB/TrEMBL
  ENSSSCT00060085582.1 UniProtKB/TrEMBL
  ENSSSCT00060085606.1 UniProtKB/TrEMBL
  ENSSSCT00065109994.1 UniProtKB/TrEMBL
  ENSSSCT00065109995.1 UniProtKB/TrEMBL
  ENSSSCT00065109996.1 UniProtKB/TrEMBL
  ENSSSCT00065109997.1 UniProtKB/TrEMBL
  ENSSSCT00065109998.1 UniProtKB/TrEMBL
  ENSSSCT00065110000.1 UniProtKB/TrEMBL
  ENSSSCT00070001077.1 UniProtKB/TrEMBL
  ENSSSCT00070001088.1 UniProtKB/TrEMBL
InterPro GSCR1_dom UniProtKB/TrEMBL
KEGG Report ssc:100134970 UniProtKB/TrEMBL
NCBI Gene BICRAL ENTREZGENE
PANTHER GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1 UniProtKB/TrEMBL
  PTHR15572:SF2 UniProtKB/TrEMBL
Pfam GLTSCR1 UniProtKB/TrEMBL
UniProt A0A287B779_PIG UniProtKB/TrEMBL
  A0A480VRZ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SGG9_PIG UniProtKB/TrEMBL
  A0A8D0KHU2_PIG UniProtKB/TrEMBL
  A0A8D0KJL4_PIG UniProtKB/TrEMBL
  A0A8D0NS05_PIG UniProtKB/TrEMBL
  A0A8D0SC29_PIG UniProtKB/TrEMBL
  A0A8D0ZHN8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EG31 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1GT04_PIG UniProtKB/TrEMBL
  A0A8D1JK55_PIG UniProtKB/TrEMBL
  A0A8D1KB66 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QTL4_PIG UniProtKB/TrEMBL
  A0A8D1WEW5_PIG UniProtKB/TrEMBL
  F1RU59 ENTREZGENE
UniProt Secondary A0A287B577 UniProtKB/TrEMBL
  F1RU59 UniProtKB/TrEMBL
VGNC ID VGNC:85823 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-07-12 BICRAL  BICRA like chromatin remodeling complex associated protein  BICRAL  BRD4 interacting chromatin remodeling complex associated protein like  Symbol and/or name change 19259463 PROVISIONAL