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Gene: BRDT (bromodomain testis associated) Chlorocebus sabaeus

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Symbol:

BRDT

Name:

bromodomain testis associated

RGD ID:

18620654

Description:

ENCODES a protein that exhibits histone binding (inferred); histone reader activity (inferred); lysine-acetylated histone binding (inferred); INVOLVED IN chromatin remodeling (ortholog); positive regulation of gene expression (ortholog); spermatogenesis (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH azoospermia (ortholog); Diamond-Blackfan anemia (ortholog); oligospermia (ortholog); FOUND IN chromatin (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

bromodomain testis-specific protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	41,229,493 - 41,293,899 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	41,229,643 - 41,280,341 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	76,698,619 - 76,761,937 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

azoospermia (ISO)

Diamond-Blackfan anemia (ISO)

oligospermia (ISO)

primary ovarian insufficiency (ISO)

severe congenital neutropenia 2 (ISO)

spermatogenic failure 21 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

chromatin remodeling (IEA,ISO)

male meiosis I (IEA)

male meiotic nuclear division (IEA)

positive regulation of gene expression (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of RNA splicing (IEA)

sperm DNA condensation (IEA)

spermatogenesis (IEA,ISO)

Cellular Component

chromatin (IEA)

nucleus (IEA)

Molecular Function

histone binding (IEA)

histone reader activity (IEA)

lysine-acetylated histone binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

BRDT
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	41,229,493 - 41,293,899 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	41,229,643 - 41,280,341 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	76,698,619 - 76,761,937 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

BRDT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	91,949,371 - 92,014,428 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	91,949,343 - 92,014,426 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	92,414,928 - 92,479,985 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	92,187,720 - 92,252,573 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	92,127,152 - 92,192,004	NCBI
Celera	1	90,661,426 - 90,726,420 (+)	NCBI		Celera
Cytogenetic Map	1	p22.1	NCBI
HuRef	1	90,535,222 - 90,600,191 (+)	NCBI		HuRef
CHM1_1	1	92,529,832 - 92,594,805 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	91,794,237 - 91,859,235 (+)	NCBI		T2T-CHM13v2.0

Brdt
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	107,478,982 - 107,534,927 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	107,479,025 - 107,534,924 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	107,331,116 - 107,387,061 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	107,331,159 - 107,387,058 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	107,760,213 - 107,816,077 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	107,571,461 - 107,625,997 (+)	NCBI		MGSCv36	mm8
Celera	5	104,443,624 - 104,500,438 (+)	NCBI		Celera
Cytogenetic Map	5	E5	NCBI
cM Map	5	52.23	NCBI

Brdt
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	2,532,275 - 2,590,780 (-)	NCBI		GRCr8
mRatBN7.2	14	2,387,372 - 2,445,857 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	2,387,796 - 2,445,842 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	2,269,407 - 2,325,496 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	3,571,032 - 3,627,115 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	2,264,722 - 2,320,671 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	3,437,876 - 3,462,613 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	3,405,995 - 3,462,629 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	3,441,088 - 3,465,798 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	2,982,760 - 3,007,464 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	2,982,759 - 3,007,464 (-)	NCBI
Celera	14	2,437,605 - 2,462,270 (-)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

Brdt
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	2,431,192 - 2,494,906 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955423	2,434,146 - 2,498,523 (-)	NCBI	ChiLan1.0	ChiLan1.0

BRDT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	135,017,187 - 135,082,149 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	134,168,758 - 134,233,737 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	94,603,937 - 94,668,852 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	93,348,994 - 93,413,343 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	93,348,994 - 93,413,343 (+)	Ensembl	panpan1.1		panPan2

BRDT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	56,918,939 - 56,977,355 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	56,919,195 - 56,965,638 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	59,625,009 - 59,683,419 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	57,301,471 - 57,359,637 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	57,301,727 - 57,347,925 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	56,978,517 - 57,036,839 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	56,954,886 - 57,013,022 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	57,417,418 - 57,475,552 (-)	NCBI		UU_Cfam_GSD_1.0

Brdt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	101,843,528 - 101,906,986 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936537	7,040,993 - 7,104,245 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BRDT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	125,004,494 - 125,060,392 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	125,004,897 - 125,062,208 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	136,603,415 - 136,604,320 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Brdt
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	5,727,939 - 5,798,809 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624742	5,730,805 - 5,798,731 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

hemolymphoid system	mesenchyme	mesoderm
17	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007977976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007977977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007977978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007977979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007977980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007977981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038002882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038002891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038002895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC239371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACDXN010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000017071 ⟹ ENSCSAP00000016562

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	41,229,643 - 41,280,341 (-)	Ensembl

RefSeq Acc Id:

XM_007977977 ⟹ XP_007976168

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	41,229,493 - 41,293,898 (-)	NCBI
Vero_WHO_p1.0	NW_023666033	76,698,658 - 76,761,930 (+)	NCBI

Sequence:

show sequence

GGTCTCAATCTCTTGACCTCGTGATCCACCCGTCTCGGCCTCCCAAAGTGCTGGGATTACACCC
TCAGTCTTCTTTACCTAAAGTGTGCGTGTCTCCCTGCCACTAATTCTCAGGTCAAAAAAGGAGG
GTCAAAAAGTTGATAGTTGGGGCAAAATTTGTACTGAGTCATTCCTCTCTTTCATTTCCCTTGA
CTTCCTTTAGACTTTTCATGATATGAGAGTCACACCCTAAATCTGTACCCATCTACTCTTTTCC
TGAACGATAAAATAATCTCTATATCTAATCTCTATTTAATCTATTAGAGTTTCACTTTGTTGCC
CTGGCTGGCCTTGAACTCCTGGGATTAAGTAAGCCTTCCGCTTTACCCTCCTCAGTAACGGGCA
TTGCAGGCGCCTGCAGCCACACCATGAATACTATTTTAAACTAACACAAACAAGAACACGAAAA
TTAAATCTAAACAAAAAGTGCTTGCCAATCCAGGTATTTATGTGACGTCTAGTAAGTAGATGAA
GTGTGTTGCTTTCTTGTGAACACTTGGTTCTTTCCTCCCACACCAAAGTGATTTAATTAAGACG
TGTCAAGTTGTTAATGTCCCCCAGACTTCCGGTTCAGTAAACTGGCGATCGATGGCTTTTTGGC
CGGATTTGGGAGCAGCTCGTCAGCTGTTTTTGCCCTCCCCTTCCCATCCATCCACTGGGAATGA
GTATTAGGAATTCAGAAGGGTTGTTTGCTATTTGATCCTAAGGGAAACTACTGTACTAAATATA
TTCTTCTGACACATATTAGCACCCTTAAAGTATCTGCAAACCATCAAGAGGTAGTTGCGAAGAC
TCAAAATCCTAAACCACGCACTTATCAGCACGCAGCTGTTGCGAAACAGCTCTTAAATTGCCAC
TTTAAAACCAATGAGAGCATGTCTCCTGCCTCAGCTGCTACTTAATATTGATCAAGCACTCACT
ACGTGCAAGAGACAGGAACTGTGGAGAAGCCTGGAAAAAAAAGTGTGAAAACGACGAAAACATC
AGAAGCCAAAACTCAAGAACCTCTACTAGGCTAACTGATTAGTGAAAACGTTGTGTTAACAGCA
AACGCCCGCTCTCTGCACAGCAATGACCCCAACCCACTCTGCCTGCCCTATGAGGCCTAAGCTG
CCCAGCTCAGACTGCTCAGACTCCTACACCTTTTTTGCGCCGCCCGGGGGTAGGTGTGGTCACG
TGACAGGTTCAGACCAATGGGCAGGCCGCCCGCAGGGGGGGGGTCTCCTATAAAGGCGCCTGTC
GCAGTGGCCTAGCGGCCGCCATTACAACACAAACTGACAGCGAGGAACTGCGGAGAACTGTTGT
CCTGCACTGCTTAATTTTGTGCGACCAAAAAGGGGCAGTCACGTAAGGTCCGTTTTGTAATATA
CAGGTAACATTACAGGTAATGTACCCTCCACAGGGGGTGTTGCCTTAGGCCCGCCCCGAGGTGC
GGCCTTGGGTGGGAACAACCGTTTTTTCCCCTCTCCCCTCCCCCACCCCATCAACATCCTACGA
CAGTCCGGGCAGTTGAGAAGGCCACCCCGACTTCGTGCCTGCAGCCCAGGATATGTGCGTGTAA
GCAGGACTCCAAGCAGTTAAGAATGTCTCTGCCAAGTCGACAAACAGCTATTATTGTTAACCCT
CCTCCACCAGAGTATATAAATACCAAGAAAAATGGGCGATTGACAAATCAACTTCAGTATCTAC
AAAAAGTTGTCCTAAAGGATTTATGGAAGCATAGTTTTTCATGGCCTTTTCAACGTCCTGTGGA
TGCTGTGAAACTAAAGTTGCCTGATTATTATACCATTATAAAAAACCCAATGGATTTAAATACA
ATTAAGCAGCGCTTGGAGAATAAATATTATGTGAAGGCTTCAGAATGTATAGAAGACTTCAATA
CAATGTTCTCAAATTGTTATTTATATAACAAGCCTGGAGATGACATTGTTCTTATGGCACAAGC
TCTCGAGAAGCTGTTTATGCAGAAATTATCTCAGATGCCACAAGAAGAGCAAGTTGTGGGTGGT
AAGGAAAGAATCAAGAAAGGCACTCAACAGAATATAGCTGTTTTTTCTGCTAAAGAAAAATCAT
CGCCCAACGCAACAGAAAAAGTATTTAAGCAGCAAGCAATTCCTTCTGTATTTCCTAAGACATC
TGTTTCTCCCTTGAACGTGGCACAAGGAGCTTCAGTCAACTCCAGTTCACAAACTGTGGCCCAA
GTTACAAAGGGTGTGAAGAGGAAAGCAGATACAACAACTCCTGCAACTTCAGTAGTTAAAGCAA
GTAGTGAATTTTCTCCAACATTCACAGAAAAATCAGTGACATTGCCACCTATAAAAGAAAATAT
GCCAAAGAATGTTTTGCCAGATTCTCAGCAACAATATAATGTTGTGAAGAGTGTTAAAGTAACT
GAACAATTAAGGCACTGTAGTGAGATTCTTAAAGAAATGCTTGCAAAGAAACATTTTTCATATG
CATGGCCCTTTTATAATCCTGTTGACGTTAATGCTTTGGGACTCCATAACTACTATGACATTGT
CAAAAATCCAATGGATCTTGGAACTATTAAGGAGAAAATGGATAACCAAGAATATAAGGATGCA
TACAAATTTGCGGCAGATGTTAGATTAATGTTCATGAATTGCTACAAGTACAATCCTCCAGATC
ACGAAGTTGTGACAATGGCAAGAATGCTTCAGGATGTTTTCGAAACGCATTTTTCAAAGATCCC
AGTTGAACCTGTTGAGAGTATGCCTTTATGTTACATCAAAACAGATATCACAGAAACCACTGGT
AGAGAGAACACTAATGAAGCCTCCTCTGAAGGGAACTCTTCTGGTGATTCTGAAGATGAACGAG
TTCAGCGTCTTGCAAAGCTTCAGGAGCAGCTTAAAGCTGTATATCAGCAGCTCCAGGTTTTGTC
CCAAGTACCTTTCCGTAAGCTAAATAAAAAGAAAGAGAAGTCTAAAAAGGAAAAGAAAAAAGAA
AAGGTTAATAACAGCAATGAAAATCCAAGAAAAATGTGTGAGCAAATGAGACTAAAGGAAAAGT
CCAAGAGAAATCAGCCAAAGAAAAGGAAACAACAGTACATTGGTCAAAAATCTGAAGATGAAGA
TAATGCTAAACCTATGAACTATGATGAGAAAAGGCAGTTAAGTTTGAATATAAACAAACTCCCT
GGAGATAAACTTGGGCGAGTAGTTCATATAATACAGTCAAGAGAGCCTTCTCTGAGCAATTCCA
ATCCTGATGAGATAGAGATAGACTTTGAAACACTGAAAGCATCAACACTAAGAGAATTAGAAAA
ATATGTTTCCGCGTGTCTAAGAAAGAGACCATTAAAACCCCCTGCTAAGAAAATAATGATGTCC
AAAGAACTTCACTCACAGAAAAAACAGGAGTTGGAAAAGCGGTTACTGGATGTTAATAATCAGT
TAAATTCTAGAAAACGTCAAACAAAATCTAAGAAAACGCAACCATCCAAAGCTGTTGGAAGTGT
TTCCCGACTGAGTGAGAGCAGCAGCAGCAGCAGCAGCTCATCAGAGTCTGAAAGTAGCAGCAGT
GACTTAAGCTCTTCAGACAGCAGTGGTTCTGAATCAGAAATGTTCCCTAAGTTTACAGAAGTAA
AACCAAATGATTCTCCTTCTAAAGAGAATGTAAAAAAAATGAAGAATGAATGTATACTGCCTGA
AGGAAGAATAGGCATCACACAGATAGAATGTTCTGTGCAAGACAAAACCTCTGCCAATACTACC
CTTGTTCATCAGACCACACCTTCACATGGAATGACACCAAATCACCACCAATTAGCATTTAATT
ATCAAGAATTAGAACATTTACAGACCGTGAAAAACATTTCATCTTTACAAATTCTGCCTCCCTC
AGGTGATTCTGAACAGCTCTCAAATGGCATAACTGTGATGCATCCATCTGGTGATAATGACACA
ACGATGTTAGAATCTGAATGTCAAGCTCCTGTGCACAAGGATATAAAGATTAAGAATGCAGATT
CATGGAAAAGTTTGGGCAAATCCGTGAAACCATCAGGTGTCATGAAATCCTCAGATGAGCTCTT
CAACCAATTTAGAAAAGCAGCCATAGAAAAGGAAGTAAAAGCTCGGACACAGGAACTCATACGG
AAGCATTTGGAACAAAATACAAAGGAACCAAAAGTATCGCAAGAAAACCAGAGGGATCCTGGGA
ATGGATTGACTGTAGAATGTTTTTCAAATAAAATACAAAACAAGTGCTCTGGAGAAGAGCAGAA
AGAACATCAGCAGTCATTGGAAGCTCAAGATAAATCCAAACTCTGGCTTCTCAAAGACCGTAAT
TTAGCAAGGGAGAAAGAACAAGAGAGGAGGAGGAGAGAAGCAATGGCGGGTACCATTGATATGA
CCCTTCAAAGTGACATTATGACAATGTTTGAAAACAACTTTGATTAAAACTTAGTTTTTAAATT
AACCATCAACTTAAAATGAATGGTAAAAGATCAAAATGCATGTGGTAAAATGATTGCTTTCAGA
TAGCAAGATACCAATCTTATATTGTATTTTGACTGCTCTAAAATGATTAAACAGTTTTCACTTA
CA

hide sequence

RefSeq Acc Id:

XM_007977978 ⟹ XP_007976169

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	41,229,493 - 41,293,898 (-)	NCBI
Vero_WHO_p1.0	NW_023666033	76,698,619 - 76,761,937 (+)	NCBI

Sequence:

show sequence

GGTCTCAATCTCTTGACCTCGTGATCCACCCGTCTCGGCCTCCCAAAGTGCTGGGATTACACCC
TCAGTCTTCTTTACCTAAAGTGTGCGTGTCTCCCTGCCACTAATTCTCAGGTCAAAAAAGGAGG
GTCAAAAAGTTGATAGTTGGGGCAAAATTTGTACTGAGTCATTCCTCTCTTTCATTTCCCTTGA
CTTCCTTTAGACTTTTCATGATATGAGAGTCACACCCTAAATCTGTACCCATCTACTCTTTTCC
TGAACGATAAAATAATCTCTATATCTAATCTCTATTTAATCTATTAGAGTTTCACTTTGTTGCC
CTGGCTGGCCTTGAACTCCTGGGATTAAGTAAGCCTTCCGCTTTACCCTCCTCAGTAACGGGCA
TTGCAGGCGCCTGCAGCCACACCATGAATACTATTTTAAACTAACACAAACAAGAACACGAAAA
TTAAATCTAAACAAAAAGTGCTTGCCAATCCAGGTATTTATGTGACGTCTAGTAAGTAGATGAA
GTGTGTTGCTTTCTTGTGAACACTTGGTTCTTTCCTCCCACACCAAAGTGATTTAATTAAGACG
TGTCAAGTTGTTAATGTCCCCCAGACTTCCGGTTCAGTAAACTGGCGATCGATGGCTTTTTGGC
CGGATTTGGGAGCAGCTCGTCAGCTGTTTTTGCCCTCCCCTTCCCATCCATCCACTGGGAATGA
GTATTAGGAATTCAGAAGGGTTGTTTGCTATTTGATCCTAAGGGAAACTACTGTACTAAATATA
TTCTTCTGACACATATTAGCACCCTTAAAGTATCTGCAAACCATCAAGAGGTAGTTGCGAAGAC
TCAAAATCCTAAACCACGCACTTATCAGCACGCAGCTGTTGCGAAACAGCTCTTAAATTGCCAC
TTTAAAACCAATGAGAGCATGTCTCCTGCCTCAGCTGCTACTTAATATTGATCAAGCACTCACT
ACGTGCAAGAGACAGGAACTGTGGAGAAGCCTGGAAAAAAAAGTGTGAAAACGACGAAAACATC
AGAAGCCAAAACTCAAGAACCTCTACTAGGCTAACTGATTAGTGAAAACGTTGTGTTAACAGCA
AACGCCCGCTCTCTGCACAGCAATGACCCCAACCCACTCTGCCTGCCCTATGAGGCCTAAGCTG
CCCAGCTCAGACTGCTCAGACTCCTACACCTTTTTTGCGCCGCCCGGGGGTAGGTGTGGTCACG
TGACAGGTTCAGACCAATGGGCAGGCCGCCCGCAGGGGGGGGGTCTCCTATAAAGGCGCCTGTC
GCAGTGGCCTAGCGGCCGCCATTACAACACAAACTGACAGCGAGGAACTGCGGAGAACTGTTGT
CCTGCACTGCTTAATTTTGTGCGACCAAAAAGGGGCAGTCACGTAAGGTCCGTTTTGTAATATA
CAGGTAACATTACAGGTAATGTACCCTCCACAGGGGGTGTTGCCTTAGGCCCGCCCCGAGGTGC
GGCCTTGGGTGGGAACAACCGTTTTTTCCCCTCTCCCCTCCCCCACCCCATCAACATCCTACGA
CAGTCCGGGCAGTTGAGAAGGCCACCCCGACTTCGTGCCTGCAGCCCAGTTCCTCTTAGGTCTT
GGACTGGCGTGGATCGCTGCTGCCTGTACTGTAATTTTGGAAATGCAAGAGAAAGATATGTGCG
TGTAAGCAGGACTCCAAGCAGTTAAGAATGTCTCTGCCAAGTCGACAAACAGCTATTATTGTTA
ACCCTCCTCCACCAGAGTATATAAATACCAAGAAAAATGGGCGATTGACAAATCAACTTCAGTA
TCTACAAAAAGTTGTCCTAAAGGATTTATGGAAGCATAGTTTTTCATGGCCTTTTCAACGTCCT
GTGGATGCTGTGAAACTAAAGTTGCCTGATTATTATACCATTATAAAAAACCCAATGGATTTAA
ATACAATTAAGCAGCGCTTGGAGAATAAATATTATGTGAAGGCTTCAGAATGTATAGAAGACTT
CAATACAATGTTCTCAAATTGTTATTTATATAACAAGCCTGGAGATGACATTGTTCTTATGGCA
CAAGCTCTCGAGAAGCTGTTTATGCAGAAATTATCTCAGATGCCACAAGAAGAGCAAGTTGTGG
GTGGTAAGGAAAGAATCAAGAAAGGCACTCAACAGAATATAGCTGTTTTTTCTGCTAAAGAAAA
ATCATCGCCCAACGCAACAGAAAAAGTATTTAAGCAGCAAGCAATTCCTTCTGTATTTCCTAAG
ACATCTGTTTCTCCCTTGAACGTGGCACAAGGAGCTTCAGTCAACTCCAGTTCACAAACTGTGG
CCCAAGTTACAAAGGGTGTGAAGAGGAAAGCAGATACAACAACTCCTGCAACTTCAGTAGTTAA
AGCAAGTAGTGAATTTTCTCCAACATTCACAGAAAAATCAGTGACATTGCCACCTATAAAAGAA
AATATGCCAAAGAATGTTTTGCCAGATTCTCAGCAACAATATAATGTTGTGAAGAGTGTTAAAG
TAACTGAACAATTAAGGCACTGTAGTGAGATTCTTAAAGAAATGCTTGCAAAGAAACATTTTTC
ATATGCATGGCCCTTTTATAATCCTGTTGACGTTAATGCTTTGGGACTCCATAACTACTATGAC
ATTGTCAAAAATCCAATGGATCTTGGAACTATTAAGGAGAAAATGGATAACCAAGAATATAAGG
ATGCATACAAATTTGCGGCAGATGTTAGATTAATGTTCATGAATTGCTACAAGTACAATCCTCC
AGATCACGAAGTTGTGACAATGGCAAGAATGCTTCAGGATGTTTTCGAAACGCATTTTTCAAAG
ATCCCAGTTGAACCTGTTGAGAGTATGCCTTTATGTTACATCAAAACAGATATCACAGAAACCA
CTGGTAGAGAGAACACTAATGAAGCCTCCTCTGAAGGGAACTCTTCTGGTGATTCTGAAGATGA
ACGAGTTCAGCGTCTTGCAAAGCTTCAGGAGCAGCTTAAAGCTGTATATCAGCAGCTCCAGGTT
TTGTCCCAAGTACCTTTCCGTAAGCTAAATAAAAAGAAAGAGAAGTCTAAAAAGGAAAAGAAAA
AAGAAAAGGTTAATAACAGCAATGAAAATCCAAGAAAAATGTGTGAGCAAATGAGACTAAAGGA
AAAGTCCAAGAGAAATCAGCCAAAGAAAAGGAAACAACAGTACATTGGTCAAAAATCTGAAGAT
GAAGATAATGCTAAACCTATGAACTATGATGAGAAAAGGCAGTTAAGTTTGAATATAAACAAAC
TCCCTGGAGATAAACTTGGGCGAGTAGTTCATATAATACAGTCAAGAGAGCCTTCTCTGAGCAA
TTCCAATCCTGATGAGATAGAGATAGACTTTGAAACACTGAAAGCATCAACACTAAGAGAATTA
GAAAAATATGTTTCCGCGTGTCTAAGAAAGAGACCATTAAAACCCCCTGCTAAGAAAATAATGA
TGTCCAAAGAACTTCACTCACAGAAAAAACAGGAGTTGGAAAAGCGGTTACTGGATGTTAATAA
TCAGTTAAATTCTAGAAAACGTCAAACAAAATCTAAGAAAACGCAACCATCCAAAGCTGTTGGA
AGTGTTTCCCGACTGAGTGAGAGCAGCAGCAGCAGCAGCAGCTCATCAGAGTCTGAAAGTAGCA
GCAGTGACTTAAGCTCTTCAGACAGCAGTGGTTCTGAATCAGAAATGTTCCCTAAGTTTACAGA
AGTAAAACCAAATGATTCTCCTTCTAAAGAGAATGTAAAAAAAATGAAGAATGAATGTATACTG
CCTGAAGGAAGAATAGGCATCACACAGATAGAATGTTCTGTGCAAGACAAAACCTCTGCCAATA
CTACCCTTGTTCATCAGACCACACCTTCACATGGAATGACACCAAATCACCACCAATTAGCATT
TAATTATCAAGAATTAGAACATTTACAGACCGTGAAAAACATTTCATCTTTACAAATTCTGCCT
CCCTCAGGTGATTCTGAACAGCTCTCAAATGGCATAACTGTGATGCATCCATCTGGTGATAATG
ACACAACGATGTTAGAATCTGAATGTCAAGCTCCTGTGCACAAGGATATAAAGATTAAGAATGC
AGATTCATGGAAAAGTTTGGGCAAATCCGTGAAACCATCAGGTGTCATGAAATCCTCAGATGAG
CTCTTCAACCAATTTAGAAAAGCAGCCATAGAAAAGGAAGTAAAAGCTCGGACACAGGAACTCA
TACGGAAGCATTTGGAACAAAATACAAAGGAACCAAAAGTATCGCAAGAAAACCAGAGGGATCC
TGGGAATGGATTGACTGTAGAATGTTTTTCAAATAAAATACAAAACAAGTGCTCTGGAGAAGAG
CAGAAAGAACATCAGCAGTCATTGGAAGCTCAAGATAAATCCAAACTCTGGCTTCTCAAAGACC
GTAATTTAGCAAGGGAGAAAGAACAAGAGAGGAGGAGGAGAGAAGCAATGGCGGGTACCATTGA
TATGACCCTTCAAAGTGACATTATGACAATGTTTGAAAACAACTTTGATTAAAACTTAGTTTTT
AAATTAACCATCAACTTAAAATGAATGGTAAAAGATCAAAATGCATGTGGTAAAATGATTGCTT
TCAGATAGCAAGATACCAATCTTATATTGTATTTTGACTGCTCTAAAATGATTAAACAGTTTTC
ACTTACA

hide sequence

RefSeq Acc Id:

XM_007977979 ⟹ XP_007976170

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	41,229,493 - 41,290,514 (-)	NCBI
Vero_WHO_p1.0	NW_023666033	76,700,921 - 76,761,937 (+)	NCBI

Sequence:

show sequence

GAGTTCAGGAGTTTGAGACCAGCCTGGGCAATAGAGTGAGACCCTATCTCTATAAAAAATACAA
AAAACTCTGCAAAGAGACTGTATCCCCAAATTCTAGCTCAATGCTTTGGCCGCATTTGTAGGTG
CTTTATGTTAGTACATATTCAATGAATGAACAAATAGAATTTGGAAAATGGTATCCTGGAAACC
AGAAGAGCATTTTAAGAGTCATAATAGTTTAGTGACAGATGTTCCTGGGAGGTCAAGTTAAGAG
TCAAAAATAATTCATTGGATTTAACAATTTAGTATGGATATGTGCGTGTAAGCAGGACTCCAAG
CAGTTAAGAATGTCTCTGCCAAGTCGACAAACAGCTATTATTGTTAACCCTCCTCCACCAGAGT
ATATAAATACCAAGAAAAATGGGCGATTGACAAATCAACTTCAGTATCTACAAAAAGTTGTCCT
AAAGGATTTATGGAAGCATAGTTTTTCATGGCCTTTTCAACGTCCTGTGGATGCTGTGAAACTA
AAGTTGCCTGATTATTATACCATTATAAAAAACCCAATGGATTTAAATACAATTAAGCAGCGCT
TGGAGAATAAATATTATGTGAAGGCTTCAGAATGTATAGAAGACTTCAATACAATGTTCTCAAA
TTGTTATTTATATAACAAGCCTGGAGATGACATTGTTCTTATGGCACAAGCTCTCGAGAAGCTG
TTTATGCAGAAATTATCTCAGATGCCACAAGAAGAGCAAGTTGTGGGTGGTAAGGAAAGAATCA
AGAAAGGCACTCAACAGAATATAGCTGTTTTTTCTGCTAAAGAAAAATCATCGCCCAACGCAAC
AGAAAAAGTATTTAAGCAGCAAGCAATTCCTTCTGTATTTCCTAAGACATCTGTTTCTCCCTTG
AACGTGGCACAAGGAGCTTCAGTCAACTCCAGTTCACAAACTGTGGCCCAAGTTACAAAGGGTG
TGAAGAGGAAAGCAGATACAACAACTCCTGCAACTTCAGTAGTTAAAGCAAGTAGTGAATTTTC
TCCAACATTCACAGAAAAATCAGTGACATTGCCACCTATAAAAGAAAATATGCCAAAGAATGTT
TTGCCAGATTCTCAGCAACAATATAATGTTGTGAAGAGTGTTAAAGTAACTGAACAATTAAGGC
ACTGTAGTGAGATTCTTAAAGAAATGCTTGCAAAGAAACATTTTTCATATGCATGGCCCTTTTA
TAATCCTGTTGACGTTAATGCTTTGGGACTCCATAACTACTATGACATTGTCAAAAATCCAATG
GATCTTGGAACTATTAAGGAGAAAATGGATAACCAAGAATATAAGGATGCATACAAATTTGCGG
CAGATGTTAGATTAATGTTCATGAATTGCTACAAGTACAATCCTCCAGATCACGAAGTTGTGAC
AATGGCAAGAATGCTTCAGGATGTTTTCGAAACGCATTTTTCAAAGATCCCAGTTGAACCTGTT
GAGAGTATGCCTTTATGTTACATCAAAACAGATATCACAGAAACCACTGGTAGAGAGAACACTA
ATGAAGCCTCCTCTGAAGGGAACTCTTCTGGTGATTCTGAAGATGAACGAGTTCAGCGTCTTGC
AAAGCTTCAGGAGCAGCTTAAAGCTGTATATCAGCAGCTCCAGGTTTTGTCCCAAGTACCTTTC
CGTAAGCTAAATAAAAAGAAAGAGAAGTCTAAAAAGGAAAAGAAAAAAGAAAAGGTTAATAACA
GCAATGAAAATCCAAGAAAAATGTGTGAGCAAATGAGACTAAAGGAAAAGTCCAAGAGAAATCA
GCCAAAGAAAAGGAAACAACAGTACATTGGTCAAAAATCTGAAGATGAAGATAATGCTAAACCT
ATGAACTATGATGAGAAAAGGCAGTTAAGTTTGAATATAAACAAACTCCCTGGAGATAAACTTG
GGCGAGTAGTTCATATAATACAGTCAAGAGAGCCTTCTCTGAGCAATTCCAATCCTGATGAGAT
AGAGATAGACTTTGAAACACTGAAAGCATCAACACTAAGAGAATTAGAAAAATATGTTTCCGCG
TGTCTAAGAAAGAGACCATTAAAACCCCCTGCTAAGAAAATAATGATGTCCAAAGAACTTCACT
CACAGAAAAAACAGGAGTTGGAAAAGCGGTTACTGGATGTTAATAATCAGTTAAATTCTAGAAA
ACGTCAAACAAAATCTAAGAAAACGCAACCATCCAAAGCTGTTGGAAGTGTTTCCCGACTGAGT
GAGAGCAGCAGCAGCAGCAGCAGCTCATCAGAGTCTGAAAGTAGCAGCAGTGACTTAAGCTCTT
CAGACAGCAGTGGTTCTGAATCAGAAATGTTCCCTAAGTTTACAGAAGTAAAACCAAATGATTC
TCCTTCTAAAGAGAATGTAAAAAAAATGAAGAATGAATGTATACTGCCTGAAGGAAGAATAGGC
ATCACACAGATAGAATGTTCTGTGCAAGACAAAACCTCTGCCAATACTACCCTTGTTCATCAGA
CCACACCTTCACATGGAATGACACCAAATCACCACCAATTAGCATTTAATTATCAAGAATTAGA
ACATTTACAGACCGTGAAAAACATTTCATCTTTACAAATTCTGCCTCCCTCAGGTGATTCTGAA
CAGCTCTCAAATGGCATAACTGTGATGCATCCATCTGGTGATAATGACACAACGATGTTAGAAT
CTGAATGTCAAGCTCCTGTGCACAAGGATATAAAGATTAAGAATGCAGATTCATGGAAAAGTTT
GGGCAAATCCGTGAAACCATCAGGTGTCATGAAATCCTCAGATGAGCTCTTCAACCAATTTAGA
AAAGCAGCCATAGAAAAGGAAGTAAAAGCTCGGACACAGGAACTCATACGGAAGCATTTGGAAC
AAAATACAAAGGAACCAAAAGTATCGCAAGAAAACCAGAGGGATCCTGGGAATGGATTGACTGT
AGAATGTTTTTCAAATAAAATACAAAACAAGTGCTCTGGAGAAGAGCAGAAAGAACATCAGCAG
TCATTGGAAGCTCAAGATAAATCCAAACTCTGGCTTCTCAAAGACCGTAATTTAGCAAGGGAGA
AAGAACAAGAGAGGAGGAGGAGAGAAGCAATGGCGGGTACCATTGATATGACCCTTCAAAGTGA
CATTATGACAATGTTTGAAAACAACTTTGATTAAAACTTAGTTTTTAAATTAACCATCAACTTA
AAATGAATGGTAAAAGATCAAAATGCATGTGGTAAAATGATTGCTTTCAGATAGCAAGATACCA
ATCTTATATTGTATTTTGACTGCTCTAAAATGATTAAACAGTTTTCACTTACA

hide sequence

RefSeq Acc Id:

XM_038002882 ⟹ XP_037858810

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	76,698,619 - 76,761,937 (+)	NCBI

RefSeq Acc Id:

XM_038002891 ⟹ XP_037858819

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	76,698,619 - 76,761,937 (+)	NCBI

RefSeq Acc Id:

XM_038002895 ⟹ XP_037858823

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	76,698,619 - 76,761,937 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007976168	(Get FASTA)	NCBI Sequence Viewer
	XP_007976169	(Get FASTA)	NCBI Sequence Viewer
	XP_007976170	(Get FASTA)	NCBI Sequence Viewer
	XP_037858810	(Get FASTA)	NCBI Sequence Viewer
	XP_037858819	(Get FASTA)	NCBI Sequence Viewer
	XP_037858823	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000016562.1

RefSeq Acc Id:	XP_007976168 ⟸ XM_007977977
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9S6S3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007976169 ⟸ XM_007977978
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9S6S3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007976170 ⟸ XM_007977979
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9S6S3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000016562 ⟸ ENSCSAT00000017071

RefSeq Acc Id:	XP_037858810 ⟸ XM_038002882
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S6S3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037858819 ⟸ XM_038002891
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9S6S3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037858823 ⟸ XM_038002895
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9S6S3 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000001462	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000017071.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1270.220	UniProtKB/TrEMBL
	1.20.920.10	UniProtKB/TrEMBL
InterPro	BRD4_CDT	UniProtKB/TrEMBL
	Bromo_Brdt_I	UniProtKB/TrEMBL
	Bromo_Brdt_II	UniProtKB/TrEMBL
	Bromo_chromatin_reader	UniProtKB/TrEMBL
	Bromodomain	UniProtKB/TrEMBL
	Bromodomain-like_sf	UniProtKB/TrEMBL
	Bromodomain_CS	UniProtKB/TrEMBL
	NET_dom	UniProtKB/TrEMBL
	NET_sf	UniProtKB/TrEMBL
KEGG Report	csab:103224442	UniProtKB/TrEMBL
NCBI Gene	BRDT	ENTREZGENE
PANTHER	BROMODOMAIN TESTIS-SPECIFIC PROTEIN	UniProtKB/TrEMBL
	FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS	UniProtKB/TrEMBL
Pfam	BET	UniProtKB/TrEMBL
	BRD4_CDT	UniProtKB/TrEMBL
	Bromodomain	UniProtKB/TrEMBL
PRINTS	BROMODOMAIN	UniProtKB/TrEMBL
PROSITE	BROMODOMAIN_1	UniProtKB/TrEMBL
	BROMODOMAIN_2	UniProtKB/TrEMBL
	NET	UniProtKB/TrEMBL
SMART	BROMO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47370	UniProtKB/TrEMBL
UniProt	A0A0D9S6S3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations