Brdt (bromodomain testis associated) - Rat Genome Database

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Pathways
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Gene: Brdt (bromodomain testis associated) Heterocephalus glaber
Analyze
Symbol: Brdt
Name: bromodomain testis associated
RGD ID: 18920303
Description: ENCODES a protein that exhibits histone binding (ortholog); histone reader activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); male meiosis I (ortholog); male meiotic nuclear division (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH azoospermia (ortholog); genetic disease (ortholog); oligospermia (ortholog); FOUND IN chromatin (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bromodomain testis-specific protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247425,727,939 - 5,798,809 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247425,730,805 - 5,798,731 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Brdt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247425,727,939 - 5,798,809 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247425,730,805 - 5,798,731 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BRDT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,949,371 - 92,014,428 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,949,343 - 92,014,426 (+)EnsemblGRCh38hg38GRCh38
GRCh37192,414,928 - 92,479,985 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,187,720 - 92,252,573 (+)NCBINCBI36Build 36hg18NCBI36
Build 34192,127,152 - 92,192,004NCBI
Celera190,661,426 - 90,726,420 (+)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef190,535,222 - 90,600,191 (+)NCBIHuRef
CHM1_1192,529,832 - 92,594,805 (+)NCBICHM1_1
T2T-CHM13v2.0191,794,237 - 91,859,235 (+)NCBIT2T-CHM13v2.0
Brdt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395107,478,982 - 107,534,927 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5107,479,025 - 107,534,924 (+)EnsemblGRCm39 Ensembl
GRCm385107,331,116 - 107,387,061 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,331,159 - 107,387,058 (+)EnsemblGRCm38mm10GRCm38
MGSCv375107,760,213 - 107,816,077 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365107,571,461 - 107,625,997 (+)NCBIMGSCv36mm8
Celera5104,443,624 - 104,500,438 (+)NCBICelera
Cytogenetic Map5E5NCBI
cM Map552.23NCBI
Brdt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8142,532,275 - 2,590,780 (-)NCBIGRCr8
mRatBN7.2142,387,372 - 2,445,857 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,387,796 - 2,445,842 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx142,269,407 - 2,325,496 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0143,571,032 - 3,627,115 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0142,264,722 - 2,320,671 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0143,437,876 - 3,462,613 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,405,995 - 3,462,629 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,441,088 - 3,465,798 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,982,760 - 3,007,464 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1142,982,759 - 3,007,464 (-)NCBI
Celera142,437,605 - 2,462,270 (-)NCBICelera
Cytogenetic Map14p22NCBI
Brdt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554232,431,192 - 2,494,906 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554232,434,146 - 2,498,523 (-)NCBIChiLan1.0ChiLan1.0
BRDT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21135,017,187 - 135,082,149 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11134,168,758 - 134,233,737 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,603,937 - 94,668,852 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,348,994 - 93,413,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,348,994 - 93,413,343 (+)Ensemblpanpan1.1panPan2
BRDT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1656,918,939 - 56,977,355 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl656,919,195 - 56,965,638 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha659,625,009 - 59,683,419 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0657,301,471 - 57,359,637 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl657,301,727 - 57,347,925 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1656,978,517 - 57,036,839 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0656,954,886 - 57,013,022 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0657,417,418 - 57,475,552 (-)NCBIUU_Cfam_GSD_1.0
Brdt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058101,843,528 - 101,906,986 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365377,040,993 - 7,104,245 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRDT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4125,004,494 - 125,060,392 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14125,004,897 - 125,062,208 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24136,603,415 - 136,604,320 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BRDT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12041,229,493 - 41,293,899 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2041,229,643 - 41,280,341 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603376,698,619 - 76,761,937 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005983   ⟹   ENSHGLP00000005909
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247425,727,939 - 5,798,809 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000005984   ⟹   ENSHGLP00000005910
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247425,727,939 - 5,798,809 (-)Ensembl
RefSeq Acc Id: XM_004841280   ⟹   XP_004841337
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247425,730,805 - 5,798,726 (-)NCBI
RefSeq Acc Id: XM_021255387   ⟹   XP_021111046
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247425,730,805 - 5,798,726 (-)NCBI
RefSeq Acc Id: XM_021255388   ⟹   XP_021111047
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247425,730,805 - 5,798,402 (-)NCBI
RefSeq Acc Id: XM_021255389   ⟹   XP_021111048
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247425,730,805 - 5,798,731 (-)NCBI
RefSeq Acc Id: XM_021255390   ⟹   XP_021111049
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247425,730,805 - 5,798,726 (-)NCBI
RefSeq Acc Id: XM_021255391   ⟹   XP_021111050
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247425,730,805 - 5,798,443 (-)NCBI
RefSeq Acc Id: XM_021255392   ⟹   XP_021111051
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247425,730,805 - 5,798,727 (-)NCBI
RefSeq Acc Id: XM_021255393   ⟹   XP_021111052
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247425,730,805 - 5,796,954 (-)NCBI
RefSeq Acc Id: XM_021255394   ⟹   XP_021111053
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247425,730,805 - 5,784,179 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021111048   ⟸   XM_021255389
- Peptide Label: isoform X1
- UniProtKB: G5ASI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111051   ⟸   XM_021255392
- Peptide Label: isoform X1
- UniProtKB: G5ASI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111049   ⟸   XM_021255390
- Peptide Label: isoform X1
- UniProtKB: G5ASI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004841337   ⟸   XM_004841280
- Peptide Label: isoform X2
- UniProtKB: G5ASI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111046   ⟸   XM_021255387
- Peptide Label: isoform X1
- UniProtKB: G5ASI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111050   ⟸   XM_021255391
- Peptide Label: isoform X1
- UniProtKB: G5ASI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111047   ⟸   XM_021255388
- Peptide Label: isoform X1
- UniProtKB: G5ASI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111052   ⟸   XM_021255393
- Peptide Label: isoform X1
- UniProtKB: G5ASI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111053   ⟸   XM_021255394
- Peptide Label: isoform X3
- UniProtKB: G5ASI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000005909   ⟸   ENSHGLT00000005983
RefSeq Acc Id: ENSHGLP00000005910   ⟸   ENSHGLT00000005984


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004317 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005983 ENTREZGENE
Gene3D-CATH 1.20.1270.220 UniProtKB/TrEMBL
  Bromodomain-like UniProtKB/TrEMBL
InterPro BRD4_CDT UniProtKB/TrEMBL
  Bromo_Brdt_II UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  NET_dom UniProtKB/TrEMBL
  NET_sf UniProtKB/TrEMBL
NCBI Gene Brdt ENTREZGENE
PANTHER BROMODOMAIN TESTIS-SPECIFIC PROTEIN UniProtKB/TrEMBL
  FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS UniProtKB/TrEMBL
Pfam BET UniProtKB/TrEMBL
  BRD4_CDT UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  NET UniProtKB/TrEMBL
SMART BROMO UniProtKB/TrEMBL
Superfamily-SCOP Bromodomain UniProtKB/TrEMBL
UniProt G5ASI3 ENTREZGENE, UniProtKB/TrEMBL