SLC25A29 (solute carrier family 25 member 29) - Rat Genome Database

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Gene: SLC25A29 (solute carrier family 25 member 29) Chlorocebus sabaeus
Analyze
Symbol: SLC25A29
Name: solute carrier family 25 member 29
RGD ID: 18616178
Description: ENCODES a protein that exhibits acyl carnitine transmembrane transporter activity (ortholog); INVOLVED IN acyl carnitine transmembrane transport (ortholog); acyl carnitine transport (ortholog); carnitine transport (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial basic amino acids transporter; mitochondrial carnitine/acylcarnitine carrier protein CACL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12478,251,571 - 78,266,550 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2478,250,796 - 78,266,490 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605365,391,846 - 65,406,815 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC25A29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12478,251,571 - 78,266,550 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2478,250,796 - 78,266,490 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605365,391,846 - 65,406,815 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC25A29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814100,278,567 - 100,306,444 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14100,291,116 - 100,306,547 (-)EnsemblGRCh38hg38GRCh38
GRCh3714100,757,453 - 100,772,781 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,827,206 - 99,842,613 (-)NCBINCBI36Build 36hg18NCBI36
Build 341499,827,207 - 99,842,531NCBI
Celera1480,812,080 - 80,827,487 (-)NCBICelera
Cytogenetic Map14q32.2NCBI
HuRef1480,938,813 - 80,954,218 (-)NCBIHuRef
CHM1_114100,695,232 - 100,710,638 (-)NCBICHM1_1
T2T-CHM13v2.01494,512,311 - 94,539,478 (-)NCBIT2T-CHM13v2.0
Slc25a29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,791,804 - 108,801,802 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12108,791,799 - 108,801,809 (-)EnsemblGRCm39 Ensembl
GRCm3812108,825,878 - 108,835,876 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,825,873 - 108,835,883 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712110,064,088 - 110,074,086 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612109,273,685 - 109,283,683 (-)NCBIMGSCv36mm8
Celera12110,062,182 - 110,072,113 (-)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1259.62NCBI
Slc25a29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86133,506,403 - 133,517,322 (-)NCBIGRCr8
mRatBN7.26127,742,027 - 127,752,915 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6127,742,033 - 127,752,940 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6127,865,225 - 127,875,828 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06128,160,271 - 128,170,874 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06127,519,452 - 127,530,247 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06132,736,964 - 132,747,912 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6132,735,883 - 132,747,828 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06141,907,044 - 141,917,947 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46133,166,812 - 133,177,600 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16133,172,998 - 133,183,787 (-)NCBI
Celera6125,292,929 - 125,303,719 (-)NCBICelera
Cytogenetic Map6q32NCBI
Slc25a29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543821,389,057 - 21,394,124 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543821,383,805 - 21,393,897 (-)NCBIChiLan1.0ChiLan1.0
SLC25A29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215101,442,504 - 101,457,731 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114100,658,998 - 100,674,220 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01480,911,975 - 80,927,196 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114100,225,449 - 100,240,528 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14100,226,620 - 100,240,360 (-)Ensemblpanpan1.1panPan2
SLC25A29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1868,578,323 - 68,585,867 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl868,566,924 - 68,585,545 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha868,097,044 - 68,109,617 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0868,862,195 - 68,874,742 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl868,862,184 - 68,875,670 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1868,524,082 - 68,536,636 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0868,590,260 - 68,602,776 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0868,987,660 - 69,000,222 (-)NCBIUU_Cfam_GSD_1.0
Slc25a29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086406,116,609 - 6,132,202 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366043,949,930 - 3,965,597 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366043,950,266 - 3,965,836 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7121,178,161 - 121,192,278 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17121,178,211 - 121,192,369 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27128,642,786 - 128,656,867 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Slc25a29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247343,830,743 - 3,839,098 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247343,830,624 - 3,839,970 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC25A29
296 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000008459   ⟹   ENSCSAP00000006605
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2478,250,796 - 78,266,490 (-)Ensembl
RefSeq Acc Id: XM_007987836   ⟹   XP_007986027
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12478,251,571 - 78,266,550 (-)NCBI
Vero_WHO_p1.0NW_02366605365,391,846 - 65,406,815 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007987837   ⟹   XP_007986028
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12478,251,571 - 78,256,715 (-)NCBI
Vero_WHO_p1.0NW_02366605365,391,846 - 65,396,507 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037984491   ⟹   XP_037840419
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605365,391,846 - 65,406,815 (-)NCBI
RefSeq Acc Id: XM_037984492   ⟹   XP_037840420
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605365,391,846 - 65,396,507 (-)NCBI
RefSeq Acc Id: XM_037984494   ⟹   XP_037840422
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605365,391,846 - 65,405,682 (-)NCBI
RefSeq Acc Id: XM_037984495   ⟹   XP_037840423
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605365,391,846 - 65,406,815 (-)NCBI
RefSeq Acc Id: XM_037984496   ⟹   XP_037840424
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605365,391,846 - 65,406,815 (-)NCBI
RefSeq Acc Id: XM_037984497   ⟹   XP_037840425
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605365,391,846 - 65,405,682 (-)NCBI
RefSeq Acc Id: XM_037984498   ⟹   XP_037840426
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605365,391,846 - 65,400,656 (-)NCBI
RefSeq Acc Id: XP_007986027   ⟸   XM_007987836
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RDB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007986028   ⟸   XM_007987837
- Peptide Label: isoform X5
Ensembl Acc Id: ENSCSAP00000006605   ⟸   ENSCSAT00000008459
RefSeq Acc Id: XP_037840419   ⟸   XM_037984491
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037840424   ⟸   XM_037984496
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037840423   ⟸   XM_037984495
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037840425   ⟸   XM_037984497
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037840422   ⟸   XM_037984494
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037840426   ⟸   XM_037984498
- Peptide Label: isoform X7
RefSeq Acc Id: XP_037840420   ⟸   XM_037984492
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010371 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008459.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_Carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103229691 UniProtKB/TrEMBL
NCBI Gene SLC25A29 ENTREZGENE
PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER UniProtKB/TrEMBL
  MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A0D9RDB6 ENTREZGENE, UniProtKB/TrEMBL