Slc25a29 (solute carrier family 25 member 29) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Slc25a29 (solute carrier family 25 member 29) Rattus norvegicus
Analyze
Symbol: Slc25a29
Name: solute carrier family 25 member 29
RGD ID: 1308104
Description: Predicted to enable acyl carnitine transmembrane transporter activity; high-affinity L-arginine transmembrane transporter activity; and high-affinity lysine transmembrane transporter activity. Predicted to be involved in L-alpha-amino acid transmembrane transport. Predicted to act upstream of or within acyl carnitine transmembrane transport and organic cation transport. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Orthologous to human SLC25A29 (solute carrier family 25 member 29); INTERACTS WITH (S)-ropivacaine; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CACT-like; carnitine/acylcarnitine translocase-like; LOC314441; mitochondrial basic amino acids transporter; mitochondrial carnitine/acylcarnitine carrier protein CACL; mitochondrial ornithine transporter 3; solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29; solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29; solute carrier family 25, member 29
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86133,506,403 - 133,517,322 (-)NCBIGRCr8
mRatBN7.26127,742,027 - 127,752,915 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6127,742,033 - 127,752,940 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6127,865,225 - 127,875,828 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06128,160,271 - 128,170,874 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06127,519,452 - 127,530,247 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06132,736,964 - 132,747,912 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6132,735,883 - 132,747,828 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06141,907,044 - 141,917,947 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46133,166,812 - 133,177,600 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16133,172,998 - 133,183,787 (-)NCBI
Celera6125,292,929 - 125,303,719 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-ropivacaine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bromobenzene  (EXP)
bupivacaine  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
clobetasol  (ISO)
coumestrol  (ISO)
diazinon  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gemcitabine  (ISO)
hydrogen cyanide  (ISO)
indole-3-methanol  (EXP)
L-methionine  (ISO)
lamivudine  (ISO)
leflunomide  (EXP,ISO)
levobupivacaine  (EXP)
mepivacaine  (EXP)
methimazole  (EXP)
N-nitrosodiethylamine  (EXP)
oxycodone  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
progesterone  (ISO)
propiconazole  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
Tesaglitazar  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triadimefon  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
mitochondrial inner membrane  (IEA)
mitochondrion  (IBA,IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12882971   PMID:18614015   PMID:19287344   PMID:24652292  


Genomics

Comparative Map Data
Slc25a29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86133,506,403 - 133,517,322 (-)NCBIGRCr8
mRatBN7.26127,742,027 - 127,752,915 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6127,742,033 - 127,752,940 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6127,865,225 - 127,875,828 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06128,160,271 - 128,170,874 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06127,519,452 - 127,530,247 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06132,736,964 - 132,747,912 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6132,735,883 - 132,747,828 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06141,907,044 - 141,917,947 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46133,166,812 - 133,177,600 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16133,172,998 - 133,183,787 (-)NCBI
Celera6125,292,929 - 125,303,719 (-)NCBICelera
Cytogenetic Map6q32NCBI
SLC25A29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814100,278,567 - 100,306,444 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14100,291,116 - 100,306,547 (-)EnsemblGRCh38hg38GRCh38
GRCh3714100,757,453 - 100,772,781 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,827,206 - 99,842,613 (-)NCBINCBI36Build 36hg18NCBI36
Build 341499,827,207 - 99,842,531NCBI
Celera1480,812,080 - 80,827,487 (-)NCBICelera
Cytogenetic Map14q32.2NCBI
HuRef1480,938,813 - 80,954,218 (-)NCBIHuRef
CHM1_114100,695,232 - 100,710,638 (-)NCBICHM1_1
T2T-CHM13v2.01494,512,311 - 94,539,478 (-)NCBIT2T-CHM13v2.0
Slc25a29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,791,804 - 108,801,802 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12108,791,799 - 108,801,809 (-)EnsemblGRCm39 Ensembl
GRCm3812108,825,878 - 108,835,876 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,825,873 - 108,835,883 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712110,064,088 - 110,074,086 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612109,273,685 - 109,283,683 (-)NCBIMGSCv36mm8
Celera12110,062,182 - 110,072,113 (-)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1259.62NCBI
Slc25a29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543821,389,057 - 21,394,124 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543821,383,805 - 21,393,897 (-)NCBIChiLan1.0ChiLan1.0
SLC25A29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215101,442,504 - 101,457,731 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114100,658,998 - 100,674,220 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01480,911,975 - 80,927,196 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114100,225,449 - 100,240,528 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14100,226,620 - 100,240,360 (-)Ensemblpanpan1.1panPan2
SLC25A29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1868,578,323 - 68,585,867 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl868,566,924 - 68,585,545 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha868,097,044 - 68,109,617 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0868,862,195 - 68,874,742 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1868,524,082 - 68,536,636 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0868,590,260 - 68,602,776 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0868,987,660 - 69,000,222 (-)NCBIUU_Cfam_GSD_1.0
Slc25a29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086406,116,609 - 6,132,202 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366043,949,930 - 3,965,597 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366043,950,266 - 3,965,836 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7121,178,161 - 121,192,278 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17121,178,211 - 121,192,369 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27128,642,786 - 128,656,867 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12478,251,571 - 78,266,550 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2478,250,796 - 78,266,490 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605365,391,846 - 65,406,815 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247343,830,743 - 3,839,098 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247343,830,624 - 3,839,970 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc25a29
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:93
Interacting mature miRNAs:104
Transcripts:ENSRNOT00000005753
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat

Markers in Region
RH128483  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26127,742,184 - 127,742,391 (+)MAPPERmRatBN7.2
Rnor_6.06132,737,126 - 132,737,332NCBIRnor6.0
Rnor_5.06141,907,202 - 141,907,408UniSTSRnor5.0
RGSC_v3.46133,166,964 - 133,167,170UniSTSRGSC3.4
Celera6125,293,081 - 125,293,287UniSTS
Cytogenetic Map6q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 16
Low 2 43 49 33 19 33 8 11 58 35 34 11 8
Below cutoff 8 8 8 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005753   ⟹   ENSRNOP00000005753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6127,742,033 - 127,752,940 (-)Ensembl
Rnor_6.0 Ensembl6132,735,883 - 132,747,828 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094029   ⟹   ENSRNOP00000087840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6127,742,033 - 127,744,091 (-)Ensembl
RefSeq Acc Id: NM_001010958   ⟹   NP_001010958
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86133,506,409 - 133,517,197 (-)NCBI
mRatBN7.26127,742,033 - 127,752,821 (-)NCBI
Rnor_6.06132,736,974 - 132,747,762 (-)NCBI
Rnor_5.06141,907,044 - 141,917,947 (-)NCBI
RGSC_v3.46133,166,812 - 133,177,600 (-)RGD
Celera6125,292,929 - 125,303,719 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240541   ⟹   XP_006240603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86133,506,403 - 133,517,321 (-)NCBI
mRatBN7.26127,742,027 - 127,752,915 (-)NCBI
Rnor_6.06132,736,964 - 132,747,709 (-)NCBI
Rnor_5.06141,907,044 - 141,917,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112402   ⟹   XP_038968330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86133,506,403 - 133,517,322 (-)NCBI
mRatBN7.26127,742,027 - 127,752,910 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001010958 (Get FASTA)   NCBI Sequence Viewer  
  XP_006240603 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968330 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89065 (Get FASTA)   NCBI Sequence Viewer  
  EDL97556 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005753
  ENSRNOP00000005753.5
  ENSRNOP00000087840.1
GenBank Protein Q5HZE0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001010958   ⟸   NM_001010958
- UniProtKB: Q5HZE0 (UniProtKB/Swiss-Prot),   A6KBH5 (UniProtKB/TrEMBL),   A0A8I6GGF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240603   ⟸   XM_006240541
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q298 (UniProtKB/TrEMBL),   A0A8I6GGF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005753   ⟸   ENSRNOT00000005753
RefSeq Acc Id: XP_038968330   ⟸   XM_039112402
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GGF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000087840   ⟸   ENSRNOT00000094029

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5HZE0-F1-model_v2 AlphaFold Q5HZE0 1-306 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694822
Promoter ID:EPDNEW_R5346
Type:initiation region
Name:Slc25a29_1
Description:solute carrier family 25 member 29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06132,747,830 - 132,747,890EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308104 AgrOrtholog
BioCyc Gene G2FUF-36277 BioCyc
Ensembl Genes ENSRNOG00000004351 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005753.6 UniProtKB/TrEMBL
  ENSRNOT00000094029.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7319298 IMAGE-MGC_LOAD
InterPro Mit_carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:314441 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105631 IMAGE-MGC_LOAD
NCBI Gene 314441 ENTREZGENE
PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc25a29 PhenoGen
PRINTS MITOCARRIER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004351 RatGTEx
Superfamily-SCOP SSF103506 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6GGF5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q298 ENTREZGENE, UniProtKB/TrEMBL
  A6KBH5 ENTREZGENE, UniProtKB/TrEMBL
  MCATL_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc25a29  solute carrier family 25 member 29  Slc25a29  solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-16 Slc25a29  solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29  Slc25a29  solute carrier family 25, member 29  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-19 Slc25a29  solute carrier family 25, member 29  Slc25a29  solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Slc25a29  solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29  Slc25a29_predicted  solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Slc25a29_predicted  solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29 (predicted)      Symbol and Name status set to approved 70820 APPROVED