Slc25a29 (solute carrier family 25 member 29)

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Gene: Slc25a29 (solute carrier family 25 member 29) Rattus norvegicus

Analyze

Symbol:

Slc25a29

Name:

solute carrier family 25 member 29

RGD ID:

1308104

Description:

Predicted to enable acyl carnitine transmembrane transporter activity; high-affinity L-arginine transmembrane transporter activity; and high-affinity lysine transmembrane transporter activity. Predicted to be involved in L-alpha-amino acid transmembrane transport. Predicted to act upstream of or within acyl carnitine transmembrane transport; monoatomic cation transmembrane transport; and organic cation transport. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Orthologous to human SLC25A29 (solute carrier family 25 member 29); INTERACTS WITH (S)-ropivacaine; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CACT-like; carnitine/acylcarnitine translocase-like; LOC314441; mitochondrial basic amino acids transporter; mitochondrial carnitine/acylcarnitine carrier protein CACL; mitochondrial ornithine transporter 3; solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29; solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29; solute carrier family 25, member 29

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	127,742,027 - 127,752,915 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	127,742,033 - 127,752,940 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	127,865,225 - 127,875,828 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	6	128,160,271 - 128,170,874 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	6	127,519,452 - 127,530,247 (-)	NCBI	Rnor_WKY
Rnor_6.0	6	132,736,964 - 132,747,912 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	132,735,883 - 132,747,828 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	141,907,044 - 141,917,947 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	133,166,812 - 133,177,600 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	133,172,998 - 133,183,787 (-)	NCBI
Celera	6	125,292,929 - 125,303,719 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

COVID-19 (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-ropivacaine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

beta-naphthoflavone (EXP)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

bupivacaine (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

choline (ISO)

clobetasol (ISO)

coumestrol (ISO)

diazinon (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

gemcitabine (ISO)

hydrogen cyanide (ISO)

indole-3-methanol (EXP)

L-methionine (ISO)

lamivudine (ISO)

leflunomide (EXP,ISO)

levobupivacaine (EXP)

mepivacaine (EXP)

N-nitrosodiethylamine (EXP)

oxycodone (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (EXP,ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

potassium cyanide (ISO)

progesterone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

temozolomide (ISO)

Tesaglitazar (EXP)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acyl carnitine transmembrane transport (ISO,ISS)

acyl carnitine transport (ISO)

carnitine transport (ISO,ISS)

L-arginine transmembrane transport (ISO,ISS)

L-histidine transmembrane transport (ISO,ISS)

L-lysine transmembrane transport (ISO,ISS)

mitochondrial L-ornithine transmembrane transport (IBA,ISO,ISS)

ornithine transport (ISO,ISS)

transmembrane transport (IEA)

Cellular Component

membrane (IEA)

mitochondrial inner membrane (IEA)

mitochondrion (IBA,ISO,ISS)

Molecular Function

acyl carnitine transmembrane transporter activity (ISO,ISS)

basic amino acid transmembrane transporter activity (ISO,ISS)

high-affinity L-arginine transmembrane transporter activity (IBA,ISO,ISS)

high-affinity lysine transmembrane transporter activity (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12882971	PMID:18614015	PMID:19287344	PMID:24652292

Genomics

Comparative Map Data

Slc25a29
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	127,742,027 - 127,752,915 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	127,742,033 - 127,752,940 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	127,865,225 - 127,875,828 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	6	128,160,271 - 128,170,874 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	6	127,519,452 - 127,530,247 (-)	NCBI	Rnor_WKY
Rnor_6.0	6	132,736,964 - 132,747,912 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	132,735,883 - 132,747,828 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	141,907,044 - 141,917,947 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	133,166,812 - 133,177,600 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	133,172,998 - 133,183,787 (-)	NCBI
Celera	6	125,292,929 - 125,303,719 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

SLC25A29
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	100,278,567 - 100,306,444 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	14	100,291,116 - 100,306,547 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	100,757,453 - 100,772,781 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	99,827,206 - 99,842,613 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	99,827,207 - 99,842,531	NCBI
Celera	14	80,812,080 - 80,827,487 (-)	NCBI		Celera
Cytogenetic Map	14	q32.2	NCBI
HuRef	14	80,938,813 - 80,954,218 (-)	NCBI		HuRef
CHM1_1	14	100,695,232 - 100,710,638 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	94,524,151 - 94,539,478 (-)	NCBI		T2T-CHM13v2.0

Slc25a29
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	108,791,804 - 108,801,802 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	108,791,799 - 108,801,809 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	108,825,878 - 108,835,876 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	108,825,873 - 108,835,883 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	110,064,088 - 110,074,086 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	109,273,685 - 109,283,683 (-)	NCBI		MGSCv36	mm8
Celera	12	110,062,182 - 110,072,113 (-)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI

Slc25a29
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	21,389,057 - 21,394,124 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	21,383,805 - 21,393,897 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC25A29
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	14	100,225,449 - 100,240,528 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	100,226,620 - 100,240,360 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	14	80,911,975 - 80,927,196 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

SLC25A29
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	68,578,323 - 68,585,867 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	68,566,924 - 68,585,545 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	68,097,044 - 68,109,617 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	68,862,195 - 68,874,742 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	8	68,524,082 - 68,536,636 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	68,590,260 - 68,602,776 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	68,987,660 - 69,000,222 (-)	NCBI		UU_Cfam_GSD_1.0

Slc25a29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	6,116,609 - 6,132,202 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936604	3,949,930 - 3,965,597 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936604	3,950,266 - 3,965,836 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC25A29
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	121,178,161 - 121,192,278 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	121,178,211 - 121,192,369 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	128,642,786 - 128,656,867 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC25A29
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	78,251,571 - 78,266,550 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	78,250,796 - 78,266,490 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	65,391,846 - 65,406,815 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc25a29
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	3,830,743 - 3,839,098 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	3,830,624 - 3,839,970 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc25a29
11 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	121
Count of miRNA genes:	93
Interacting mature miRNAs:	104
Transcripts:	ENSRNOT00000005753
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	72202632	130729475	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	72202632	130919985	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	72227641	130729205	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	72227641	130729205	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	84130881	129130881	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	85140138	130140138	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	85140138	130140138	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	85311061	133478515	Rat
1300076	Glom8	Glomerulus QTL 8	7	0.000000009	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	86894788	131894788	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	88047916	133047916	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	93701310	128713626	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	94968928	137848904	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	94968928	139968928	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	96833997	140994061	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	100364669	140994061	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	100671796	132340886	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	104085867	128713626	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	105156861	140994061	Rat
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	106752656	132339866	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	112636280	140994061	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	116506292	130245370	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	122549046	137801795	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	122549046	140286318	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	122549046	140994061	Rat
2312560	Pur20	Proteinuria QTL 20	2.1	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	125628133	137801795	Rat

Markers in Region

RH128483

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	127,742,184 - 127,742,391 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	132,737,126 - 132,737,332	NCBI	Rnor6.0
Rnor_5.0	6	141,907,202 - 141,907,408	UniSTS	Rnor5.0
RGSC_v3.4	6	133,166,964 - 133,167,170	UniSTS	RGSC3.4
Celera	6	125,293,081 - 125,293,287	UniSTS
Cytogenetic Map	6	q32	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1								16
Low	2	43	49	33	19	33	8	11	58	35	34	11	8
Below cutoff			8	8		8					7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001010958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000005753 ⟹ ENSRNOP00000005753

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	127,742,033 - 127,752,940 (-)	Ensembl
Rnor_6.0 Ensembl	6	132,735,883 - 132,747,828 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094029 ⟹ ENSRNOP00000087840

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	127,742,033 - 127,744,091 (-)	Ensembl

RefSeq Acc Id:

NM_001010958 ⟹ NP_001010958

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	127,742,033 - 127,752,821 (-)	NCBI
Rnor_6.0	6	132,736,974 - 132,747,762 (-)	NCBI
Rnor_5.0	6	141,907,044 - 141,917,947 (-)	NCBI
RGSC_v3.4	6	133,166,812 - 133,177,600 (-)	RGD
Celera	6	125,292,929 - 125,303,719 (-)	RGD

Sequence:

show sequence

CCACTGCGCGCCCGGAGGCCTTACAGCCCGAGTCCCGAGGAGTAGTAGGACTCAGCCGGCTCGC
CCGGCCGGGCCATGGCGCTCGACTTCCTGGCTGGATGCGCCGGAGGTGTGGCAGGTGTGATTGT
GGGACACCCTTTTGACACAGTCAAGGTGCGGCTTCAAGTACAGAACACAGAGAAGCCTCAGTAC
CGAGGGACGCTGCACTGCTTCCAGTCTATCATCAAGCAAGAAAGTGTGCTGGGTCTCTATAAAG
GCCTGGGCTCGCCACTAATGGGACTCACCTTCATCAATGCACTGGTGTTTGGGGTGCAGGGTAA
CACCCTCCGGGCCCTGGGCCAAGACTCACCACTCAATCAGTTCCTGGCGGGTGCAGCAGCAGGC
GCCATTCAGTGTGTCATCTGTTGCCCCATGGAACTGGCCAAGACGAGGCTGCAGCTGCAGGCGG
CAGGCCCTGCCCGTGCCTACAAGGGCTCCCTGGATTGCCTGGTACAGATTTACCGGCATGAGGG
CCTGCGCGGCATCAACCGGGGCATGGTGTCCACACTCCTGCGGGAGACGCCCAGCTTCGGGGTC
TACTTCCTCACTTACGATGTACTGACCCGTGCCATGGGCTGCGAGCCAGGCGACCGCCTGCTGG
TGCCCAAGCTGCTGCTGGCGGGCGGCACATCGGGCATCACCTCCTGGCTCTCCACCTATCCCAT
GGACGTGGTTAAGTCGCGCCTGCAAGCCGACGGGCTGCAGGGAACCCCTCGCTACCGCGGCATC
GTCGACTGCATGCGGCAGAGTTACCAGGCCGAGGGCTGGCAAGTCTTCACAAGAGGGCTGGCCT
CCACACTGCTACGTGCCTTCCCGGTCAACGCCGCCACCTTCGCCACGGTCACTGTGGTGCTTAC
GTATATCCGGGGTGAGGAGGATCAGGTAGACAGCGAGGCAGCTCCGGGCGCCTCTACCACTCCT
GCCGGGCCAGCCCTGGCCCAGCCATCCAGTCTGTGATCCTGTCTGTCCCACTAACTTTGTTGGT
GTGACACGGAGGGGAATATGGCTCCTCGGCCAATCTTCTTGCTCATTGGCCAGTGATGCCAGCC
AGTCTACACCCCACTGGCCTCCTATTTTCTTAGCTGTAAAATGGGGACTCTTCCTCATATGGGG
TACATTCGGGGAGATCAAGCCTACCTAAGTCTGCACTCTGCAGACAGAGCTGCCAGCCAGAGTC
TTCCGAGCCCAGCACTCCCAGGGGTTATCTCTTGAGCCAACCATTACAAACCGGCCAAGGACCC
ACCCGTTCCCCAGATCCTCCAGCGACCATGTGGTAGGGACAGTGGCAGCACACAATGCTCTCGG
CGTTGCAGAGCAGCCCTGCCTCCATGGCTAGCTTCTCCACTGCTGCTCCTGAACGGCAGAGCAG
GGTTGAGACCCTGGCACCAAGCTTGTGGACGATGGAGCCAGTGTAGGGCCTGAATGGGAGCAGA
CAGGCCACTGGCCTCAATGTCTCCACAGGGAAATTGTGTAACAGCTGTGGCAGGACAAAGTCAT
CTTACCTCTGGGCCTTAGGCTACCTGTCTGTAGGATGGAGGCCTGGGTCAGCTGATGTCTGGCT
CTCTTAGTGCCACCCAGGATTCCCAGTGGTAGGTAGTCAGAGGGTCCAGGAGAACACTGTGGGA
TCGGCCCATTTCCCAGTAAATGCCATCCTTCTGAGCACTGTCAGTGCCTGTGCCTGTGAAGGCA
CAGAGGTCTTGGCACCAGTACAGAGTTGCCAGTTTGCACCTGCCTGGGCGGGGGAAACTGAGCT
CTGGCTGTCCGGCACCATTGTACTGTCCTCTAAAGGAATAAAGTCGTTTTCCAGTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006240541 ⟹ XP_006240603

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	127,742,027 - 127,752,915 (-)	NCBI
Rnor_6.0	6	132,736,964 - 132,747,709 (-)	NCBI
Rnor_5.0	6	141,907,044 - 141,917,947 (-)	NCBI

Sequence:

show sequence

AGCCGGCTCGCCCGGCCGGGCCATGGCGCTCGACTTCCTGGCTGGATGCGCCGGAGGTGTGGCA
GGTGTGATTGTGGGACACCCTTTTGACACAGTCAAGGTGAGTACTGTGGAAGCACAGACGTCGG
GGACAGACATCGGCGTGCAGGGTTTCTGCCCAGGATCACAGTAAAAGTCACGCCCAGGTTCTGA
GTGAAGGCAGGGCTGCTGTTGGCCACCACGGAATGAGCCACCTTACCCTTCCTCCTGGAATTGC
CTCTTCCCGGAGGCTGAGCTGTATGTTGAGTCCACAGCCAAGCCTGACAGAGACTGAGGTGCGG
CTTCAAGTACAGAACACAGAGAAGCCTCAGTACCGAGGGACGCTGCACTGCTTCCAGTCTATCA
TCAAGCAAGAAAGTGTGCTGGGTCTCTATAAAGGCCTGGGCTCGCCACTAATGGGACTCACCTT
CATCAATGCACTGGTGTTTGGGGTGCAGGGTAACACCCTCCGGGCCCTGGGCCAAGACTCACCA
CTCAATCAGTTCCTGGCGGGTGCAGCAGCAGGCGCCATTCAGTGTGTCATCTGTTGCCCCATGG
AACTGGCCAAGACGAGGCTGCAGCTGCAGGCGGCAGGCCCTGCCCGTGCCTACAAGGGCTCCCT
GGATTGCCTGGTACAGATTTACCGGCATGAGGGCCTGCGCGGCATCAACCGGGGCATGGTGTCC
ACACTCCTGCGGGAGACGCCCAGCTTCGGGGTCTACTTCCTCACTTACGATGTACTGACCCGTG
CCATGGGCTGCGAGCCAGGCGACCGCCTGCTGGTGCCCAAGCTGCTGCTGGCGGGCGGCACATC
GGGCATCACCTCCTGGCTCTCCACCTATCCCATGGACGTGGTTAAGTCGCGCCTGCAAGCCGAC
GGGCTGCAGGGAACCCCTCGCTACCGCGGCATCGTCGACTGCATGCGGCAGAGTTACCAGGCCG
AGGGCTGGCAAGTCTTCACAAGAGGGCTGGCCTCCACACTGCTACGTGCCTTCCCGGTCAACGC
CGCCACCTTCGCCACGGTCACTGTGGTGCTTACGTATATCCGGGGTGAGGAGGATCAGGTAGAC
AGCGAGGCAGCTCCGGGCGCCTCTACCACTCCTGCCGGGCCAGCCCTGGCCCAGCCATCCAGTC
TGTGATCCTGTCTGTCCCACTAACTTTGTTGGTGTGACACGGAGGGGAATATGGCTCCTCGGCC
AATCTTCTTGCTCATTGGCCAGTGATGCCAGCCAGTCTACACCCCACTGGCCTCCTATTTTCTT
AGCTGTAAAATGGGGACTCTTCCTCATATGGGGTACATTCGGGGAGATCAAGCCTACCTAAGTC
TGCACTCTGCAGACAGAGCTGCCAGCCAGAGTCTTCCGAGCCCAGCACTCCCAGGGGTTATCTC
TTGAGCCAACCATTACAAACCGGCCAAGGACCCACCCGTTCCCCAGATCCTCCAGCGACCATGT
GGTAGGGACAGTGGCAGCACACAATGCTCTCGGCGTTGCAGAGCAGCCCTGCCTCCATGGCTAG
CTTCTCCACTGCTGCTCCTGAACGGCAGAGCAGGGTTGAGACCCTGGCACCAAGCTTGTGGACG
ATGGAGCCAGTGTAGGGCCTGAATGGGAGCAGACAGGCCACTGGCCTCAATGTCTCCACAGGGA
AATTGTGTAACAGCTGTGGCAGGACAAAGTCATCTTACCTCTGGGCCTTAGGCTACCTGTCTGT
AGGATGGAGGCCTGGGTCAGCTGATGTCTGGCTCTCTTAGTGCCACCCAGGATTCCCAGTGGTA
GGTAGTCAGAGGGTCCAGGAGAACACTGTGGGATCGGCCCATTTCCCAGTAAATGCCATCCTTC
TGAGCACTGTCAGTGCCTGTGCCTGTGAAGGCACAGAGGTCTTGGCACCAGTACAGAGTTGCCA
GTTTGCACCTGCCTGGGCGGGGGAAACTGAGCTCTGGCTGTCCGGCACCATTGTACTGTCCTCT
AAAGGAATAAAGTCGTTTTCCAGTGTGTGAAGCTC

hide sequence

RefSeq Acc Id:

XM_039112402 ⟹ XP_038968330

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	127,742,027 - 127,752,910 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001010958	(Get FASTA)	NCBI Sequence Viewer
	XP_006240603	(Get FASTA)	NCBI Sequence Viewer
	XP_038968330	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89065	(Get FASTA)	NCBI Sequence Viewer
	EDL97556	(Get FASTA)	NCBI Sequence Viewer
	Q5HZE0	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001010958 ⟸ NM_001010958

- UniProtKB:

Q5HZE0 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MALDFLAGCAGGVAGVIVGHPFDTVKVRLQVQNTEKPQYRGTLHCFQSIIKQESVLGLYKGLGS
PLMGLTFINALVFGVQGNTLRALGQDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQAAGPA
RAYKGSLDCLVQIYRHEGLRGINRGMVSTLLRETPSFGVYFLTYDVLTRAMGCEPGDRLLVPKL
LLAGGTSGITSWLSTYPMDVVKSRLQADGLQGTPRYRGIVDCMRQSYQAEGWQVFTRGLASTLL
RAFPVNAATFATVTVVLTYIRGEEDQVDSEAAPGASTTPAGPALAQPSSL

hide sequence

RefSeq Acc Id:	XP_006240603 ⟸ XM_006240541
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q298 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSHLTLPPGIASSRRLSCMLSPQPSLTETEVRLQVQNTEKPQYRGTLHCFQSIIKQESVLGLYK GLGSPLMGLTFINALVFGVQGNTLRALGQDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQA AGPARAYKGSLDCLVQIYRHEGLRGINRGMVSTLLRETPSFGVYFLTYDVLTRAMGCEPGDRLL VPKLLLAGGTSGITSWLSTYPMDVVKSRLQADGLQGTPRYRGIVDCMRQSYQAEGWQVFTRGLA STLLRAFPVNAATFATVTVVLTYIRGEEDQVDSEAAPGASTTPAGPALAQPSSL hide sequence

RefSeq Acc Id:

ENSRNOP00000005753 ⟸ ENSRNOT00000005753

RefSeq Acc Id:	XP_038968330 ⟸ XM_039112402
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSRNOP00000087840 ⟸ ENSRNOT00000094029

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5HZE0-F1-model_v2	AlphaFold	Q5HZE0	1-306	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694822

Promoter ID:

EPDNEW_R5346

Type:

initiation region

Name:

Slc25a29_1

Description:

solute carrier family 25 member 29

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	132,747,830 - 132,747,890	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308104	AgrOrtholog
BioCyc Gene	G2FUF-36277	BioCyc
Ensembl Genes	ENSRNOG00000004351	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000005753	ENTREZGENE
	ENSRNOP00000005753.5	UniProtKB/TrEMBL
	ENSRNOP00000087840.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005753	ENTREZGENE
	ENSRNOT00000005753.6	UniProtKB/TrEMBL
	ENSRNOT00000094029.1	UniProtKB/TrEMBL
Gene3D-CATH	1.50.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7319298	IMAGE-MGC_LOAD
InterPro	Mit_carrier	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Mitochondrial_sb/sol_carrier	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Mt_carrier_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:314441	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105631	IMAGE-MGC_LOAD
NCBI Gene	314441	ENTREZGENE
PANTHER	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Mito_carr	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc25a29	PhenoGen
PRINTS	MITOCARRIER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	SOLCAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF103506	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6GGF5_RAT	UniProtKB/TrEMBL
	A0A8L2Q298	ENTREZGENE, UniProtKB/TrEMBL
	MCATL_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc25a29	solute carrier family 25 member 29	Slc25a29	solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-16	Slc25a29	solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29	Slc25a29	solute carrier family 25, member 29	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-19	Slc25a29	solute carrier family 25, member 29	Slc25a29	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Slc25a29	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	Slc25a29_predicted	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Slc25a29_predicted	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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