SLC25A29 (solute carrier family 25 member 29) - Rat Genome Database

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Gene: SLC25A29 (solute carrier family 25 member 29) Homo sapiens
Analyze
Symbol: SLC25A29
Name: solute carrier family 25 member 29
RGD ID: 1317684
HGNC Page HGNC
Description: Enables high-affinity arginine transmembrane transporter activity and high-affinity lysine transmembrane transporter activity. Involved in L-alpha-amino acid transmembrane transport. Located in mitochondrion.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: AL157871.2; C14orf69; CACL; CACT-like; carnitine-acylcarnitine translocase like; carnitine/acylcarnitine translocase-like; FLJ38975; mitochondrial basic amino acids transporter; mitochondrial carnitine/acylcarnitine carrier protein CACL; mitochondrial ornithine transporter 3; ORNT3; solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29; solute carrier family 25, member 29
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl14100,291,116 - 100,306,547 (-)EnsemblGRCh38hg38GRCh38
GRCh3814100,277,986 - 100,306,536 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3714100,757,453 - 100,772,781 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,827,206 - 99,842,613 (-)NCBINCBI36hg18NCBI36
Build 341499,827,207 - 99,842,531NCBI
Celera1480,812,080 - 80,827,487 (-)NCBI
Cytogenetic Map14q32.2NCBI
HuRef1480,938,813 - 80,954,218 (-)NCBIHuRef
CHM1_114100,695,232 - 100,710,638 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:12477932   PMID:12882971   PMID:14702039   PMID:16344560   PMID:19287344   PMID:20877624   PMID:21873635   PMID:23266187   PMID:24652292   PMID:27173435   PMID:29459713  


Genomics

Comparative Map Data
SLC25A29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl14100,291,116 - 100,306,547 (-)EnsemblGRCh38hg38GRCh38
GRCh3814100,277,986 - 100,306,536 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3714100,757,453 - 100,772,781 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,827,206 - 99,842,613 (-)NCBINCBI36hg18NCBI36
Build 341499,827,207 - 99,842,531NCBI
Celera1480,812,080 - 80,827,487 (-)NCBI
Cytogenetic Map14q32.2NCBI
HuRef1480,938,813 - 80,954,218 (-)NCBIHuRef
CHM1_114100,695,232 - 100,710,638 (-)NCBICHM1_1
Slc25a29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,791,804 - 108,801,802 (-)NCBIGRCm39mm39
GRCm39 Ensembl12108,791,799 - 108,801,809 (-)Ensembl
GRCm3812108,825,878 - 108,835,876 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,825,873 - 108,835,883 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712110,064,088 - 110,074,086 (-)NCBIGRCm37mm9NCBIm37
MGSCv3612109,273,685 - 109,283,683 (-)NCBImm8
Celera12110,062,182 - 110,072,113 (-)NCBICelera
Cytogenetic Map12F1NCBI
Slc25a29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26127,742,027 - 127,752,915 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl6127,742,033 - 127,752,940 (-)Ensembl
Rnor_6.06132,736,964 - 132,747,912 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6132,735,883 - 132,747,828 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06141,907,044 - 141,917,947 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46133,166,812 - 133,177,600 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16133,172,998 - 133,183,787 (-)NCBI
Celera6125,292,929 - 125,303,719 (-)NCBICelera
Cytogenetic Map6q32NCBI
Slc25a29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543821,389,057 - 21,394,124 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543821,383,805 - 21,393,897 (-)NCBIChiLan1.0ChiLan1.0
SLC25A29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.114100,225,449 - 100,240,528 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14100,226,620 - 100,240,360 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01480,911,975 - 80,927,196 (-)NCBIMhudiblu_PPA_v0panPan3
SLC25A29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1868,578,323 - 68,585,867 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl868,566,924 - 68,585,545 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha868,097,044 - 68,109,617 (-)NCBI
ROS_Cfam_1.0868,862,195 - 68,874,742 (-)NCBI
UMICH_Zoey_3.1868,524,082 - 68,536,636 (-)NCBI
UNSW_CanFamBas_1.0868,590,260 - 68,602,776 (-)NCBI
UU_Cfam_GSD_1.0868,987,660 - 69,000,222 (-)NCBI
Slc25a29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086406,116,609 - 6,132,202 (+)NCBI
SpeTri2.0NW_0049366043,950,266 - 3,965,836 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7121,178,161 - 121,192,278 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17121,178,211 - 121,192,369 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27128,642,786 - 128,656,867 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12478,251,571 - 78,266,550 (-)NCBI
ChlSab1.1 Ensembl2478,250,796 - 78,266,490 (-)Ensembl
Vero_WHO_p1.0NW_02366605365,391,846 - 65,406,815 (-)NCBI
Slc25a29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247343,830,624 - 3,839,970 (+)NCBI

Position Markers
SLC25A29__6846  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3714100,757,292 - 100,758,157UniSTSGRCh37
Build 361499,827,045 - 99,827,910RGDNCBI36
Celera1480,811,919 - 80,812,784RGD
HuRef1480,938,652 - 80,939,517UniSTS
RH15727  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3714100,757,478 - 100,757,652UniSTSGRCh37
Build 361499,827,231 - 99,827,405RGDNCBI36
Celera1480,812,105 - 80,812,279RGD
Cytogenetic Map14q32.2UniSTS
HuRef1480,938,838 - 80,939,012UniSTS
GeneMap99-GB4 RH Map14280.09UniSTS
NCBI RH Map141086.7UniSTS
RH78286  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3714100,769,152 - 100,769,274UniSTSGRCh37
Build 361499,838,905 - 99,839,027RGDNCBI36
Celera1480,823,779 - 80,823,901RGD
Cytogenetic Map14q32.2UniSTS
HuRef1480,950,510 - 80,950,632UniSTS
GeneMap99-GB4 RH Map14277.83UniSTS
NCBI RH Map141086.1UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7818
Count of miRNA genes:1146
Interacting mature miRNAs:1434
Transcripts:ENST00000359232, ENST00000392908, ENST00000539621, ENST00000553359, ENST00000553574, ENST00000554060, ENST00000554224, ENST00000554291, ENST00000554912, ENST00000555051, ENST00000555475, ENST00000555888, ENST00000555927, ENST00000555949, ENST00000556201, ENST00000556505, ENST00000556715, ENST00000556844, ENST00000556868, ENST00000556873, ENST00000557438
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 45 45
Medium 1915 1742 1385 329 766 177 3398 984 3359 257 1392 1456 162 1098 1928 2
Low 524 1248 296 295 1164 288 959 1213 375 162 68 112 13 1 106 860 3 2
Below cutoff 1 18

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001352820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001352821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001352822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001352823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_152333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006720038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006720039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011536447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011536448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024449479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001750155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK095532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK289627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL157871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI828620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX247983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF529947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA201175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000359232   ⟹   ENSP00000352167
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,291,116 - 100,306,444 (-)Ensembl
RefSeq Acc Id: ENST00000392908   ⟹   ENSP00000376640
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,291,118 - 100,306,441 (-)Ensembl
RefSeq Acc Id: ENST00000553359
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,295,693 - 100,306,533 (-)Ensembl
RefSeq Acc Id: ENST00000553574
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,295,893 - 100,298,248 (-)Ensembl
RefSeq Acc Id: ENST00000554060   ⟹   ENSP00000451644
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,292,735 - 100,306,490 (-)Ensembl
RefSeq Acc Id: ENST00000554224   ⟹   ENSP00000451573
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,292,458 - 100,306,547 (-)Ensembl
RefSeq Acc Id: ENST00000554291   ⟹   ENSP00000452324
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,292,608 - 100,294,199 (-)Ensembl
RefSeq Acc Id: ENST00000554912   ⟹   ENSP00000450913
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,291,116 - 100,296,545 (-)Ensembl
RefSeq Acc Id: ENST00000555051
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,295,897 - 100,299,244 (-)Ensembl
RefSeq Acc Id: ENST00000555475
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,293,587 - 100,294,388 (-)Ensembl
RefSeq Acc Id: ENST00000555888
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,298,645 - 100,299,529 (-)Ensembl
RefSeq Acc Id: ENST00000555927   ⟹   ENSP00000452078
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,292,230 - 100,295,861 (-)Ensembl
RefSeq Acc Id: ENST00000555949
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,298,019 - 100,306,532 (-)Ensembl
RefSeq Acc Id: ENST00000556201
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,304,915 - 100,305,809 (-)Ensembl
RefSeq Acc Id: ENST00000556505   ⟹   ENSP00000452446
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,291,686 - 100,295,734 (-)Ensembl
RefSeq Acc Id: ENST00000556715   ⟹   ENSP00000451952
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,292,525 - 100,306,515 (-)Ensembl
RefSeq Acc Id: ENST00000556844
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,304,953 - 100,306,424 (-)Ensembl
RefSeq Acc Id: ENST00000556868   ⟹   ENSP00000451808
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,292,781 - 100,306,517 (-)Ensembl
RefSeq Acc Id: ENST00000556873
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,295,695 - 100,299,076 (-)Ensembl
RefSeq Acc Id: ENST00000557438
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl14100,298,598 - 100,306,444 (-)Ensembl
RefSeq Acc Id: NM_001039355   ⟹   NP_001034444
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,116 - 100,306,444 (-)NCBI
GRCh3714100,745,514 - 100,772,884 (-)NCBI
Build 361499,827,206 - 99,842,613 (-)NCBI Archive
Celera1480,812,080 - 80,827,487 (-)RGD
HuRef1480,938,813 - 80,954,218 (-)ENTREZGENE
CHM1_114100,695,227 - 100,710,662 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291813   ⟹   NP_001278742
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,116 - 100,306,444 (-)NCBI
CHM1_114100,695,227 - 100,710,662 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291814   ⟹   NP_001278743
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,116 - 100,306,444 (-)NCBI
CHM1_114100,695,227 - 100,710,662 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001352820   ⟹   NP_001339749
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,116 - 100,306,444 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001352821   ⟹   NP_001339750
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,116 - 100,306,444 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001352822   ⟹   NP_001339751
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,116 - 100,306,444 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001352823   ⟹   NP_001339752
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,116 - 100,306,444 (-)NCBI
Sequence:
RefSeq Acc Id: NM_152333   ⟹   NP_689546
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,116 - 100,306,444 (-)NCBI
CHM1_114100,695,227 - 100,710,662 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006720038   ⟹   XP_006720101
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,111 - 100,306,444 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006720039   ⟹   XP_006720102
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,111 - 100,306,444 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011536447   ⟹   XP_011534749
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,111 - 100,306,444 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011536448   ⟹   XP_011534750
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,111 - 100,306,444 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020988   ⟹   XP_016876477
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,295,503 - 100,306,536 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024449479   ⟹   XP_024305247
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,291,111 - 100,306,444 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001750155
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,277,986 - 100,306,534 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001034444 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278742 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278743 (Get FASTA)   NCBI Sequence Viewer  
  NP_001339749 (Get FASTA)   NCBI Sequence Viewer  
  NP_001339750 (Get FASTA)   NCBI Sequence Viewer  
  NP_001339751 (Get FASTA)   NCBI Sequence Viewer  
  NP_001339752 (Get FASTA)   NCBI Sequence Viewer  
  NP_689546 (Get FASTA)   NCBI Sequence Viewer  
  XP_006720101 (Get FASTA)   NCBI Sequence Viewer  
  XP_006720102 (Get FASTA)   NCBI Sequence Viewer  
  XP_011534749 (Get FASTA)   NCBI Sequence Viewer  
  XP_011534750 (Get FASTA)   NCBI Sequence Viewer  
  XP_016876477 (Get FASTA)   NCBI Sequence Viewer  
  XP_024305247 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI32965 (Get FASTA)   NCBI Sequence Viewer  
  AAI32967 (Get FASTA)   NCBI Sequence Viewer  
  BAC04751 (Get FASTA)   NCBI Sequence Viewer  
  BAD18767 (Get FASTA)   NCBI Sequence Viewer  
  BAF82316 (Get FASTA)   NCBI Sequence Viewer  
  BAG53079 (Get FASTA)   NCBI Sequence Viewer  
  BAG53964 (Get FASTA)   NCBI Sequence Viewer  
  CAD62317 (Get FASTA)   NCBI Sequence Viewer  
  EAW81692 (Get FASTA)   NCBI Sequence Viewer  
  EAW81693 (Get FASTA)   NCBI Sequence Viewer  
  EAW81694 (Get FASTA)   NCBI Sequence Viewer  
  EAW81695 (Get FASTA)   NCBI Sequence Viewer  
  Q8N8R3 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001034444   ⟸   NM_001039355
- Peptide Label: isoform 1
- UniProtKB: Q8N8R3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006720102   ⟸   XM_006720039
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006720101   ⟸   XM_006720038
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_689546   ⟸   NM_152333
- Peptide Label: isoform 2
- UniProtKB: Q8N8R3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001278743   ⟸   NM_001291814
- Peptide Label: isoform 2
- UniProtKB: Q8N8R3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001278742   ⟸   NM_001291813
- Peptide Label: isoform 2
- UniProtKB: Q8N8R3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011534750   ⟸   XM_011536448
- Peptide Label: isoform X4
- UniProtKB: Q8N8R3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011534749   ⟸   XM_011536447
- Peptide Label: isoform X4
- UniProtKB: Q8N8R3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016876477   ⟸   XM_017020988
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001339751   ⟸   NM_001352822
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: NP_001339752   ⟸   NM_001352823
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: NP_001339750   ⟸   NM_001352821
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: NP_001339749   ⟸   NM_001352820
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: XP_024305247   ⟸   XM_024449479
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSP00000452078   ⟸   ENST00000555927
RefSeq Acc Id: ENSP00000352167   ⟸   ENST00000359232
RefSeq Acc Id: ENSP00000451808   ⟸   ENST00000556868
RefSeq Acc Id: ENSP00000451952   ⟸   ENST00000556715
RefSeq Acc Id: ENSP00000452446   ⟸   ENST00000556505
RefSeq Acc Id: ENSP00000376640   ⟸   ENST00000392908
RefSeq Acc Id: ENSP00000450913   ⟸   ENST00000554912
RefSeq Acc Id: ENSP00000452324   ⟸   ENST00000554291
RefSeq Acc Id: ENSP00000451573   ⟸   ENST00000554224
RefSeq Acc Id: ENSP00000451644   ⟸   ENST00000554060

Promoters
RGD ID:6791878
Promoter ID:HG_KWN:20169
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000072449,   UC001YHB.1,   UC010AVW.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361499,842,491 - 99,843,362 (-)MPROMDB
RGD ID:7228631
Promoter ID:EPDNEW_H20061
Type:initiation region
Name:SLC25A29_1
Description:solute carrier family 25 member 29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814100,306,441 - 100,306,501EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 14q32.2-32.33(chr14:97938637-106855263)x1 copy number loss See cases [RCV000050696] Chr14:97938637..106855263 [GRCh38]
Chr14:98404974..107263478 [GRCh37]
Chr14:97474727..106334523 [NCBI36]
Chr14:14q32.2-32.33
pathogenic
GRCh38/hg38 14q32.2(chr14:100031805-100808500)x1 copy number loss See cases [RCV000051949] Chr14:100031805..100808500 [GRCh38]
Chr14:100498142..101274837 [GRCh37]
Chr14:99567895..100344590 [NCBI36]
Chr14:14q32.2
uncertain significance
GRCh38/hg38 14q31.2-32.33(chr14:83912345-106855405)x3 copy number gain See cases [RCV000052294] Chr14:83912345..106855405 [GRCh38]
Chr14:84378689..107263620 [GRCh37]
Chr14:83448442..106334665 [NCBI36]
Chr14:14q31.2-32.33
pathogenic
GRCh38/hg38 14q32.13-32.33(chr14:94628219-106451054)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052298]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052298]|See cases [RCV000052298] Chr14:94628219..106451054 [GRCh38]
Chr14:95094556..106906960 [GRCh37]
Chr14:94164309..105978005 [NCBI36]
Chr14:14q32.13-32.33
pathogenic
GRCh38/hg38 14q32.2(chr14:97210132-100471765)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052090]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052090]|See cases [RCV000052090] Chr14:97210132..100471765 [GRCh38]
Chr14:97676469..100938102 [GRCh37]
Chr14:96746222..100007855 [NCBI36]
Chr14:14q32.2
uncertain significance
GRCh38/hg38 14q31.3-32.33(chr14:86094030-106832642)x3 copy number gain See cases [RCV000052295] Chr14:86094030..106832642 [GRCh38]
Chr14:86560374..107240869 [GRCh37]
Chr14:85630127..106311914 [NCBI36]
Chr14:14q31.3-32.33
pathogenic
GRCh38/hg38 14q32.12-32.33(chr14:91455861-106832642)x3 copy number gain See cases [RCV000052296] Chr14:91455861..106832642 [GRCh38]
Chr14:91922205..107240869 [GRCh37]
Chr14:90991958..106311914 [NCBI36]
Chr14:14q32.12-32.33
pathogenic
GRCh38/hg38 14q32.2-32.33(chr14:99831655-106855263)x1 copy number loss See cases [RCV000133831] Chr14:99831655..106855263 [GRCh38]
Chr14:100297992..107263478 [GRCh37]
Chr14:99367745..106334523 [NCBI36]
Chr14:14q32.2-32.33
pathogenic
GRCh38/hg38 14q24.3-32.33(chr14:73655772-106879298)x3 copy number gain See cases [RCV000134000] Chr14:73655772..106879298 [GRCh38]
Chr14:74122475..107287505 [GRCh37]
Chr14:73192228..106358550 [NCBI36]
Chr14:14q24.3-32.33
pathogenic
GRCh38/hg38 14q32.2-32.33(chr14:97638520-106855263)x3 copy number gain See cases [RCV000135400] Chr14:97638520..106855263 [GRCh38]
Chr14:98104857..107263478 [GRCh37]
Chr14:97174610..106334523 [NCBI36]
Chr14:14q32.2-32.33
pathogenic
GRCh38/hg38 14q32.2-32.33(chr14:99448012-106850609)x3 copy number gain See cases [RCV000135875] Chr14:99448012..106850609 [GRCh38]
Chr14:99914349..107258824 [GRCh37]
Chr14:98984102..106329869 [NCBI36]
Chr14:14q32.2-32.33
pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20151149-106855263)x3 copy number gain See cases [RCV000135543] Chr14:20151149..106855263 [GRCh38]
Chr14:20619308..107263478 [GRCh37]
Chr14:19689148..106334523 [NCBI36]
Chr14:14q11.2-32.33
pathogenic
GRCh38/hg38 14q32.12-32.33(chr14:92540983-104863658)x3 copy number gain See cases [RCV000135896] Chr14:92540983..104863658 [GRCh38]
Chr14:93007328..105329995 [GRCh37]
Chr14:92077081..104401040 [NCBI36]
Chr14:14q32.12-32.33
pathogenic
GRCh38/hg38 14q32.13-32.33(chr14:95524407-106879501)x1 copy number loss See cases [RCV000136032] Chr14:95524407..106879501 [GRCh38]
Chr14:95990744..107287708 [GRCh37]
Chr14:95060497..106358753 [NCBI36]
Chr14:14q32.13-32.33
pathogenic
GRCh38/hg38 14q24.3-32.33(chr14:77222795-106879298)x3 copy number gain See cases [RCV000138230] Chr14:77222795..106879298 [GRCh38]
Chr14:77689138..107287505 [GRCh37]
Chr14:76758891..106358550 [NCBI36]
Chr14:14q24.3-32.33
pathogenic
GRCh38/hg38 14q32.2-32.31(chr14:100262836-102500697)x1 copy number loss See cases [RCV000139723] Chr14:100262836..102500697 [GRCh38]
Chr14:100729173..102967034 [GRCh37]
Chr14:99798926..102036787 [NCBI36]
Chr14:14q32.2-32.31
pathogenic
GRCh38/hg38 14q32.2(chr14:100236766-100743192)x3 copy number gain See cases [RCV000140891] Chr14:100236766..100743192 [GRCh38]
Chr14:100703103..101209529 [GRCh37]
Chr14:99772856..100279282 [NCBI36]
Chr14:14q32.2
uncertain significance
GRCh38/hg38 14q32.2-32.31(chr14:99794337-100944567)x1 copy number loss See cases [RCV000141596] Chr14:99794337..100944567 [GRCh38]
Chr14:100260674..101410904 [GRCh37]
Chr14:99330427..100480657 [NCBI36]
Chr14:14q32.2-32.31
pathogenic
GRCh38/hg38 14q32.2-32.31(chr14:99930669-101022599)x1 copy number loss See cases [RCV000142774] Chr14:99930669..101022599 [GRCh38]
Chr14:100397006..101488936 [GRCh37]
Chr14:99466759..100558689 [NCBI36]
Chr14:14q32.2-32.31
pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20043514-106877229)x3 copy number gain See cases [RCV000143373] Chr14:20043514..106877229 [GRCh38]
Chr14:20511673..107285437 [GRCh37]
Chr14:19581513..106356482 [NCBI36]
Chr14:14q11.2-32.33
pathogenic
GRCh37/hg19 14q32.2-32.33(chr14:98051841-107285437)x3 copy number gain See cases [RCV000446497] Chr14:98051841..107285437 [GRCh37]
Chr14:14q32.2-32.33
likely pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19794561-107234280)x3 copy number gain See cases [RCV000446256] Chr14:19794561..107234280 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
GRCh37/hg19 14q23.2-32.33(chr14:62493932-107285437)x3 copy number gain See cases [RCV000448557] Chr14:62493932..107285437 [GRCh37]
Chr14:14q23.2-32.33
pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:20511673-107285437) copy number gain See cases [RCV000512041] Chr14:20511673..107285437 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
GRCh37/hg19 14q32.2-32.33(chr14:100661319-107285437)x1 copy number loss See cases [RCV000511171] Chr14:100661319..107285437 [GRCh37]
Chr14:14q32.2-32.33
pathogenic
GRCh37/hg19 14q24.2-32.33(chr14:73750741-107285437)x3 copy number gain See cases [RCV000512497] Chr14:73750741..107285437 [GRCh37]
Chr14:14q24.2-32.33
pathogenic
GRCh37/hg19 14q32.2(chr14:98924025-101159952)x3 copy number gain not provided [RCV000683622] Chr14:98924025..101159952 [GRCh37]
Chr14:14q32.2
uncertain significance
GRCh37/hg19 14q32.2(chr14:100744400-100910248)x3 copy number gain not provided [RCV000845724] Chr14:100744400..100910248 [GRCh37]
Chr14:14q32.2
uncertain significance
GRCh37/hg19 14q32.2-32.33(chr14:100575917-107281934) copy number gain not provided [RCV000767752] Chr14:100575917..107281934 [GRCh37]
Chr14:14q32.2-32.33
pathogenic
GRCh37/hg19 14q11.1-32.33(chr14:19000422-107289053)x3 copy number gain not provided [RCV000738412] Chr14:19000422..107289053 [GRCh37]
Chr14:14q11.1-32.33
pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19280733-107287663)x3 copy number gain not provided [RCV000738413] Chr14:19280733..107287663 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19327823-107287663)x3 copy number gain not provided [RCV000738414] Chr14:19327823..107287663 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
GRCh37/hg19 14q32.2-32.31(chr14:99737888-101847855) copy number gain not provided [RCV000767823] Chr14:99737888..101847855 [GRCh37]
Chr14:14q32.2-32.31
likely pathogenic
GRCh37/hg19 14q32.12-32.33(chr14:91969028-107285437)x3 copy number gain not provided [RCV000848687] Chr14:91969028..107285437 [GRCh37]
Chr14:14q32.12-32.33
pathogenic
GRCh37/hg19 14q32.2-32.33(chr14:99794230-107285437)x3 copy number gain not provided [RCV000849272] Chr14:99794230..107285437 [GRCh37]
Chr14:14q32.2-32.33
pathogenic
GRCh37/hg19 14q32.2(chr14:100317190-101012999) copy number loss Gabriele de Vries syndrome [RCV001004104] Chr14:100317190..101012999 [GRCh37]
Chr14:14q32.2
pathogenic
GRCh37/hg19 14q32.2-32.33(chr14:96829290-107287663)x1 copy number loss See cases [RCV001195078] Chr14:96829290..107287663 [GRCh37]
Chr14:14q32.2-32.33
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:20116 AgrOrtholog
COSMIC SLC25A29 COSMIC
Ensembl Genes ENSG00000197119 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000352167 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000376640 UniProtKB/Swiss-Prot
  ENSP00000450913 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000451573 UniProtKB/TrEMBL
  ENSP00000451644 UniProtKB/TrEMBL
  ENSP00000451808 UniProtKB/TrEMBL
  ENSP00000451952 UniProtKB/TrEMBL
  ENSP00000452078 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000452324 UniProtKB/TrEMBL
  ENSP00000452446 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000359232 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000392908 UniProtKB/Swiss-Prot
  ENST00000554060 UniProtKB/TrEMBL
  ENST00000554224 UniProtKB/TrEMBL
  ENST00000554291 UniProtKB/TrEMBL
  ENST00000554912 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000555927 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000556505 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000556715 UniProtKB/TrEMBL
  ENST00000556868 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000197119 GTEx
HGNC ID HGNC:20116 ENTREZGENE
Human Proteome Map SLC25A29 Human Proteome Map
InterPro Mit_carrier UniProtKB/Swiss-Prot
  Mitochondrial_sb/sol_carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:123096 UniProtKB/Swiss-Prot
NCBI Gene 123096 ENTREZGENE
OMIM 615064 OMIM
Pfam Mito_carr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134980581 PharmGKB
PRINTS MITOCARRIER UniProtKB/Swiss-Prot
PROSITE SOLCAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3V441_HUMAN UniProtKB/TrEMBL
  G3V477_HUMAN UniProtKB/TrEMBL
  G3V4H8_HUMAN UniProtKB/TrEMBL
  G3V5F4_HUMAN UniProtKB/TrEMBL
  MCATL_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A3KMR5 UniProtKB/Swiss-Prot
  Q541V0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-23 SLC25A29  solute carrier family 25 member 29    solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29  Symbol and/or name change 5135510 APPROVED
2012-04-03 SLC25A29  solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29  SLC25A29  solute carrier family 25, member 29  Symbol and/or name change 5135510 APPROVED