Slc25a29 (solute carrier family 25 member 29)

Gene: Slc25a29 (solute carrier family 25 member 29) Chinchilla lanigera

Analyze

Symbol:

Slc25a29

Name:

solute carrier family 25 member 29

RGD ID:

8780160

Description:

ENCODES a protein that exhibits acyl carnitine transmembrane transporter activity (ortholog); basic amino acid transmembrane transporter activity (ortholog); high-affinity L-arginine transmembrane transporter activity (ortholog); INVOLVED IN acyl carnitine transmembrane transport (ortholog); acyl carnitine transport (ortholog); carnitine transport (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

mitochondrial basic amino acids transporter; solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	21,389,057 - 21,394,124 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	21,383,805 - 21,393,897 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

COVID-19 (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acyl carnitine transmembrane transport (ISO)

acyl carnitine transport (ISO)

carnitine transport (ISO)

L-arginine transmembrane transport (ISO)

L-histidine transmembrane transport (ISO)

L-lysine transmembrane transport (ISO)

mitochondrial L-ornithine transmembrane transport (ISO)

organic cation transport (ISO)

ornithine transport (ISO)

Cellular Component

mitochondrion (ISO)

Molecular Function

acyl carnitine transmembrane transporter activity (ISO)

basic amino acid transmembrane transporter activity (ISO)

high-affinity L-arginine transmembrane transporter activity (ISO)

high-affinity lysine transmembrane transporter activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Slc25a29
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	21,389,057 - 21,394,124 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	21,383,805 - 21,393,897 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC25A29
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	100,278,567 - 100,306,444 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	100,291,116 - 100,306,547 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	100,757,453 - 100,772,781 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	99,827,206 - 99,842,613 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	99,827,207 - 99,842,531	NCBI
Celera	14	80,812,080 - 80,827,487 (-)	NCBI		Celera
Cytogenetic Map	14	q32.2	NCBI
HuRef	14	80,938,813 - 80,954,218 (-)	NCBI		HuRef
CHM1_1	14	100,695,232 - 100,710,638 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	94,512,311 - 94,539,478 (-)	NCBI		T2T-CHM13v2.0

Slc25a29
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	108,791,804 - 108,801,802 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	108,791,799 - 108,801,809 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	108,825,878 - 108,835,876 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	108,825,873 - 108,835,883 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	110,064,088 - 110,074,086 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	109,273,685 - 109,283,683 (-)	NCBI		MGSCv36	mm8
Celera	12	110,062,182 - 110,072,113 (-)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	59.62	NCBI

Slc25a29
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	133,506,403 - 133,517,322 (-)	NCBI		GRCr8
mRatBN7.2	6	127,742,027 - 127,752,915 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	127,742,033 - 127,752,940 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	127,865,225 - 127,875,828 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	128,160,271 - 128,170,874 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	127,519,452 - 127,530,247 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	132,736,964 - 132,747,912 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	132,735,883 - 132,747,828 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	141,907,044 - 141,917,947 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	133,166,812 - 133,177,600 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	133,172,998 - 133,183,787 (-)	NCBI
Celera	6	125,292,929 - 125,303,719 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

SLC25A29
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	101,442,504 - 101,457,731 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	100,658,998 - 100,674,220 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	80,911,975 - 80,927,196 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	100,225,449 - 100,240,528 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	100,226,620 - 100,240,360 (-)	Ensembl	panpan1.1		panPan2

SLC25A29
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	68,578,323 - 68,585,867 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	68,566,924 - 68,585,545 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	68,097,044 - 68,109,617 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	68,862,195 - 68,874,742 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	8	68,524,082 - 68,536,636 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	68,590,260 - 68,602,776 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	68,987,660 - 69,000,222 (-)	NCBI		UU_Cfam_GSD_1.0

Slc25a29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	6,116,609 - 6,132,202 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936604	3,949,930 - 3,965,597 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936604	3,950,266 - 3,965,836 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC25A29
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	121,178,161 - 121,192,278 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	121,178,211 - 121,192,369 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	128,642,786 - 128,656,867 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC25A29
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	78,251,571 - 78,266,550 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	78,250,796 - 78,266,490 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	65,391,846 - 65,406,815 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc25a29
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	3,830,743 - 3,839,098 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	3,830,624 - 3,839,970 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013517271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01035539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01035540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01035541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01015561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01129385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000024331 ⟹ ENSCLAP00000024099

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955438	21,389,057 - 21,394,124 (-)	Ensembl

RefSeq Acc Id:

XM_013517271 ⟹ XP_013372725

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955438	21,383,805 - 21,393,897 (-)	NCBI

Sequence:

show sequence

GCGGGGAGCGCGCCTGGAGGTGCGAGACTCGCAGGCCGGGCCGGGAGCGGGCAGCGCGGGCAGC
GCGGGCCGGAGCGCAGGAGGAGGCGGCGGCGGCGGCTCTCCGGGCCCGGCATGGCGCTCGACTT
CCTGGCGGGCTGCGTGGGGGGCGTGGCGGGCGTGCTCGTGGGACACCCATTCGACACGGTCAAG
GTCCGGCTGCAGGTGCAGAGCGGGGACAAGCCTCAGTACCGGGGGACGCTGCACTGCTTCCAGT
CCATCATCAGACAGGAGAGCGTGCTGGGCCTGTACAAGGGCCTGGGCTCGCCGCTCATGGGGCT
CACCTTCATCAACGCGCTGGTGTTCGGGGTGCAGGGCAACACGCTGCGGGCGCTGGGCCGCGAC
TCCCCGCGGAACCAGTTCCTGGCGGGCGCGGCGGCGGGCGCCATCCAGTGCGTCATCTGCTGCC
CCATGGAGCTGGCCAAGACGCGGCTGCAGCTGCAGGCGGCGGGCGCGGCGCGCGAGTACCGGGG
CGCGCTGCACTGCCTGGCGCAGATCTACCGGCGCGAGGGCCTGCGCGGCGTGAACCGCGGCCTG
CTGTCCACGCTGCTGCGCGAGACGCCCAGCTTCGGCGTCTACTTCCTGGCCTACGACGCGCTCA
CGCGGGGCCTGGGCTGCGAGCCGGGCGCGCGCCTGCTGGTGCCCAAGCTGCTGCTGGCGGGCGG
CACGGCGGGCATCCTGTCGTGGCTGTCCACCTACCCCGTGGACGTGGTCAAGTCGCGGCTGCAG
GCGGACGGCGTGCGCGGCCCCCCGCGCTACCGCGGCATCCTCGACTGCGCGCGCCAGAGCTACG
AGGCCGAGGGCTGGCGCGTGTTCACGCGGGGCCTGGCGTCCACGCTGCTGCGCGCCTTCCCGGT
CAACGCCGCCACCTTCGCCGCCGTCACCGCGGTGCTCAGCTCCGCGCGCCGCCCCGCCGCCCCG
CCCGCGCTGGCCCAGCCGTCCAGCCTGTGACCTCCGCCCGGGGCCCTCCGCCCGGGCCGGCCCG
GAGTCGAGCCCGCCCCGTGCGCGCCCGGCACCGGGCCTGCAGCCGCTTCTCAGGATCTTCCAAA
ACCAGGGGCAGCTCCAGCCCAGCCCCTCGTGGACCCCAGCCCCAGCCGGATAC

hide sequence

Protein Sequences


Protein RefSeqs	XP_013372725	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000024099
	ENSCLAP00000024099.1

RefSeq Acc Id:

XP_013372725 ⟸ XM_013517271

- Sequence:

show sequence

MALDFLAGCVGGVAGVLVGHPFDTVKVRLQVQSGDKPQYRGTLHCFQSIIRQESVLGLYKGLGS
PLMGLTFINALVFGVQGNTLRALGRDSPRNQFLAGAAAGAIQCVICCPMELAKTRLQLQAAGAA
REYRGALHCLAQIYRREGLRGVNRGLLSTLLRETPSFGVYFLAYDALTRGLGCEPGARLLVPKL
LLAGGTAGILSWLSTYPVDVVKSRLQADGVRGPPRYRGILDCARQSYEAEGWRVFTRGLASTLL
RAFPVNAATFAAVTAVLSSARRPAAPPALAQPSSL

hide sequence

RefSeq Acc Id:

ENSCLAP00000024099 ⟸ ENSCLAT00000024331

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000016544	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000024331	ENTREZGENE
	ENSCLAT00000024331.1	UniProtKB/TrEMBL
Gene3D-CATH	1.50.40.10	UniProtKB/TrEMBL
InterPro	Mit_carrier	UniProtKB/TrEMBL
	Mitochondrial_sb/sol_carrier	UniProtKB/TrEMBL
	Mt_carrier_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Slc25a29	ENTREZGENE
PANTHER	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER	UniProtKB/TrEMBL
	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	UniProtKB/TrEMBL
Pfam	Mito_carr	UniProtKB/TrEMBL
PRINTS	MITOCARRIER	UniProtKB/TrEMBL
PROSITE	SOLCAR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103506	UniProtKB/TrEMBL
UniProt	A0A8C2W708_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Slc25a29	solute carrier family 25 member 29		solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD