RPL17 (ribosomal protein L17) - Rat Genome Database

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Gene: RPL17 (ribosomal protein L17) Chlorocebus sabaeus
Analyze
Symbol: RPL17
Name: ribosomal protein L17
RGD ID: 18612860
Description: ENCODES a protein that exhibits large ribosomal subunit rRNA binding (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); positive regulation of G1/S transition of mitotic cell cycle (ortholog); response to amino acid starvation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Myocardial Ischemia (ortholog); FOUND IN A band (ortholog); cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L17
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11831,473,050 - 31,477,287 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660505,693,487 - 5,697,782 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11831,473,050 - 31,477,287 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660505,693,487 - 5,697,782 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RPL17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381849,488,481 - 49,492,465 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1849,488,453 - 49,492,508 (-)EnsemblGRCh38hg38GRCh38
GRCh371847,014,851 - 47,018,835 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361845,268,852 - 45,272,904 (-)NCBINCBI36Build 36hg18NCBI36
Build 341845,268,855 - 45,272,849NCBI
Celera1843,870,209 - 43,874,262 (-)NCBICelera
Cytogenetic Map18q21.1NCBI
HuRef1843,868,521 - 43,872,605 (-)NCBIHuRef
CHM1_11847,010,161 - 47,014,245 (-)NCBICHM1_1
T2T-CHM13v2.01849,686,222 - 49,690,206 (-)NCBIT2T-CHM13v2.0
Rpl17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391875,132,049 - 75,136,455 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1875,131,629 - 75,136,452 (+)EnsemblGRCm39 Ensembl
GRCm381874,998,978 - 75,003,381 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1874,998,558 - 75,003,381 (+)EnsemblGRCm38mm10GRCm38
MGSCv371875,160,131 - 75,163,035 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361875,125,887 - 75,128,745 (+)NCBIMGSCv36mm8
Celera1876,224,173 - 76,227,059 (+)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1850.96NCBI
Rpl17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81870,856,275 - 70,859,388 (+)NCBIGRCr8
mRatBN7.21868,581,141 - 68,584,253 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1868,581,098 - 68,584,253 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1870,693,899 - 70,697,012 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01871,362,454 - 71,365,566 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01869,219,915 - 69,223,028 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01870,969,733 - 70,972,839 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1870,970,596 - 70,975,494 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01870,108,978 - 70,112,084 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41871,863,062 - 71,866,168 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11871,936,262 - 71,939,366 (+)NCBI
Celera1866,756,106 - 66,759,212 (+)NCBICelera
Cytogenetic Map18q12.2NCBI
RPL17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21767,016,409 - 67,021,957 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11852,708,881 - 52,714,560 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01842,870,133 - 42,874,162 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11846,219,527 - 46,223,586 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1846,219,530 - 46,223,503 (-)Ensemblpanpan1.1panPan2
RPL17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1779,264,088 - 79,268,083 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl779,264,098 - 79,268,123 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha778,669,003 - 78,672,981 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0779,330,969 - 79,334,939 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl779,330,961 - 79,334,979 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1779,046,062 - 79,050,027 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0779,076,136 - 79,080,109 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0779,360,996 - 79,364,974 (+)NCBIUU_Cfam_GSD_1.0
Rpl17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494438,218,242 - 38,222,227 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649713,457,328 - 13,460,606 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl199,043,219 - 99,048,410 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1199,044,511 - 99,048,406 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21108,447,524 - 108,451,400 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Rpl17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477813,003,900 - 13,007,903 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477813,003,936 - 13,007,903 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_007974059   ⟹   XP_007972250
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11831,473,050 - 31,477,287 (+)NCBI
Vero_WHO_p1.0NW_0236660505,693,487 - 5,697,782 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037982330   ⟹   XP_037838258
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660505,693,848 - 5,697,782 (+)NCBI
RefSeq Acc Id: XM_037982331   ⟹   XP_037838259
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660505,694,185 - 5,697,782 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007972250 (Get FASTA)   NCBI Sequence Viewer  
  XP_037838258 (Get FASTA)   NCBI Sequence Viewer  
  XP_037838259 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018415.1
Reference Protein Sequences
RefSeq Acc Id: XP_007972250   ⟸   XM_007974059
- UniProtKB: A0A0D9SC26 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037838258   ⟸   XM_037982330
- UniProtKB: A0A0D9SC26 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037838259   ⟸   XM_037982331
- UniProtKB: A0A0D9SC26 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018896 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018986.1 UniProtKB/TrEMBL
Gene3D-CATH Ribosomal protein L22/L17 UniProtKB/TrEMBL
InterPro Ribosomal_L22 UniProtKB/TrEMBL
  Ribosomal_L22/L17_euk/arc UniProtKB/TrEMBL
  Ribosomal_L22/L17_sf UniProtKB/TrEMBL
NCBI Gene RPL17 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L17 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L17 UniProtKB/TrEMBL
Pfam Ribosomal_L22 UniProtKB/TrEMBL
Superfamily-SCOP Ribosomal protein L22 UniProtKB/TrEMBL
UniProt A0A0D9SC26 ENTREZGENE, UniProtKB/TrEMBL