SOHLH1 (spermatogenesis and oogenesis specific basic helix-loop-helix 1) - Rat Genome Database

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Gene: SOHLH1 (spermatogenesis and oogenesis specific basic helix-loop-helix 1) Chlorocebus sabaeus
Analyze
Symbol: SOHLH1
Name: spermatogenesis and oogenesis specific basic helix-loop-helix 1
RGD ID: 18610390
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN cell differentiation (ortholog); oocyte differentiation (ortholog); oogenesis (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); FOUND IN cytoplasm (ortholog); male germ cell nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1122,493,066 - 2,508,396 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660582,652,074 - 2,658,421 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SOHLH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1122,493,066 - 2,508,396 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660582,652,074 - 2,658,421 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SOHLH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389135,693,407 - 135,702,112 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9135,693,407 - 135,704,498 (-)EnsemblGRCh38hg38GRCh38
GRCh379138,585,253 - 138,591,327 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369137,725,074 - 137,731,195 (-)NCBINCBI36Build 36hg18NCBI36
Celera9109,103,027 - 109,109,205 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9108,046,733 - 108,052,911 (-)NCBIHuRef
CHM1_19138,733,602 - 138,739,721 (-)NCBICHM1_1
T2T-CHM13v2.09147,920,187 - 147,928,960 (-)NCBIT2T-CHM13v2.0
Sohlh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,733,007 - 25,737,347 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,733,007 - 25,737,260 (-)EnsemblGRCm39 Ensembl
GRCm38225,842,995 - 25,847,248 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,842,995 - 25,847,248 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,698,515 - 25,702,768 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,665,004 - 25,669,257 (-)NCBIMGSCv36mm8
Celera225,562,491 - 25,566,744 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.21NCBI
Sohlh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,061,267 - 29,065,588 (-)NCBIGRCr8
mRatBN7.238,662,995 - 8,667,521 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,663,318 - 8,667,388 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,717,563 - 11,721,579 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,300,777 - 20,304,793 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0318,556,095 - 18,560,111 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.033,290,766 - 3,295,226 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl33,291,084 - 3,295,101 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.038,653,008 - 8,657,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,015,651 - 4,019,668 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera33,486,441 - 3,490,458 (-)NCBICelera
Cytogenetic Map3p13NCBI
Sohlh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555134,767,591 - 4,771,654 (+)NCBIChiLan1.0ChiLan1.0
SOHLH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,671,894 - 3,693,534 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan193,673,522 - 3,695,867 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09106,765,101 - 106,786,836 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19135,755,100 - 135,768,736 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9135,755,100 - 135,761,228 (-)Ensemblpanpan1.1panPan2
SOHLH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,593,740 - 49,598,279 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,593,703 - 49,599,113 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha948,846,147 - 48,850,679 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0950,472,938 - 50,477,471 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl950,472,933 - 50,477,545 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,252,908 - 49,257,430 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,547,156 - 49,551,680 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,595,299 - 49,599,829 (+)NCBIUU_Cfam_GSD_1.0
Sohlh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,462,874 - 201,468,044 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366691,901,892 - 1,912,184 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOHLH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21308,722,662 - 308,726,787 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sohlh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247601,154,848 - 1,159,341 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_008005672   ⟹   XP_008003863
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1122,502,160 - 2,508,396 (+)NCBI
Vero_WHO_p1.0NW_0236660582,652,074 - 2,658,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037987009   ⟹   XP_037842937
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660582,652,074 - 2,658,421 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008003863 (Get FASTA)   NCBI Sequence Viewer  
  XP_037842937 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011759.1
Reference Protein Sequences
RefSeq Acc Id: XP_008003863   ⟸   XM_008005672
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RT20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037842937   ⟸   XM_037987009
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015678 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013769.1 UniProtKB/TrEMBL
Gene3D-CATH Helix-loop-helix DNA-binding domain UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  TCFL5/SOLH1/2 UniProtKB/TrEMBL
NCBI Gene SOHLH1 ENTREZGENE
PANTHER SPERMATOGENESIS- AND OOGENESIS-SPECIFIC BASIC HELIX-LOOP-HELIX-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR-LIKE 5 PROTEIN UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP HLH, helix-loop-helix DNA-binding domain UniProtKB/TrEMBL
UniProt A0A0D9RT20 ENTREZGENE, UniProtKB/TrEMBL