LOC103222345 (trem-like transcript 4 protein) - Rat Genome Database

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Pathways
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Gene: LOC103222345 (trem-like transcript 4 protein) Chlorocebus sabaeus
Analyze
Symbol: LOC103222345 (Ensembl: TREML4)
Name: trem-like transcript 4 protein (Ensembl:triggering receptor expressed on myeloid cells like 4)
RGD ID: 18595318
Description: INVOLVED IN phagocytosis, engulfment (ortholog); positive regulation of defense response to virus by host (ortholog); positive regulation of toll-like receptor 13 signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endosome membrane (ortholog); lysosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TREML4; triggering receptor expressed on myeloid cells like 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,907,797 - 30,923,226 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1730,915,052 - 30,923,486 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604441,229,991 - 41,246,010 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC103222345
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,907,797 - 30,923,226 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1730,915,052 - 30,923,486 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604441,229,991 - 41,246,010 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TREML4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,228,349 - 41,238,882 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,228,339 - 41,238,882 (+)EnsemblGRCh38hg38GRCh38
GRCh37641,196,087 - 41,206,620 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,304,040 - 41,314,098 (+)NCBINCBI36Build 36hg18NCBI36
Build 34641,304,039 - 41,314,097NCBI
Celera642,749,509 - 42,759,573 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef640,914,595 - 40,924,658 (+)NCBIHuRef
CHM1_1641,199,332 - 41,209,396 (+)NCBICHM1_1
T2T-CHM13v2.0641,057,643 - 41,068,182 (+)NCBIT2T-CHM13v2.0
Treml4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391748,571,229 - 48,582,635 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1748,571,323 - 48,582,388 (+)EnsemblGRCm39 Ensembl
GRCm381748,264,200 - 48,275,607 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1748,264,295 - 48,275,360 (+)EnsemblGRCm38mm10GRCm38
MGSCv371748,403,661 - 48,414,724 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,729,903 - 47,740,966 (+)NCBIMGSCv36mm8
Celera1751,699,791 - 51,710,858 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.99NCBI
Treml4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,216,569 - 20,241,476 (-)NCBIGRCr8
mRatBN7.2912,718,968 - 12,743,879 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl912,721,815 - 12,743,253 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0914,668,691 - 14,707,122 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl914,685,900 - 14,706,557 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0913,590,054 - 13,628,343 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.498,133,088 - 8,160,100 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera910,477,182 - 10,514,752 (-)NCBICelera
Cytogenetic Map9q12NCBI
Treml4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554377,827,329 - 7,846,406 (-)NCBIChiLan1.0ChiLan1.0
Treml4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494645,353,914 - 45,356,695 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647618,603,620 - 18,612,050 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
Treml4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475417,600,341 - 17,608,766 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 18
Below cutoff 10 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000009339   ⟹   ENSCSAP00000007459
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1730,915,052 - 30,923,486 (-)Ensembl
RefSeq Acc Id: XM_038005667   ⟹   XP_037861595
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604441,229,991 - 41,246,010 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037861595 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000007459   ⟸   ENSCSAT00000009339
RefSeq Acc Id: XP_037861595   ⟸   XM_038005667


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011253 Ensembl, ENTREZGENE
NCBI Gene TREML4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103222345  trem-like transcript 4 protein  TREML4  triggering receptor expressed on myeloid cells like 4  Symbol and/or name change 5135510 APPROVED