MCPH1 (microcephalin 1) - Rat Genome Database

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Gene: MCPH1 (microcephalin 1) Chlorocebus sabaeus
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Symbol: MCPH1
Name: microcephalin 1
RGD ID: 18557132
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN bone development (ortholog); cerebral cortex development (ortholog); establishment of mitotic spindle orientation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH breast cancer (ortholog); Breast Neoplasms (ortholog); Developmental Disabilities (ortholog); FOUND IN centrosome (inferred); cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: microcephalin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.186,190,272 - 6,425,683 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl86,190,047 - 6,425,131 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605448,304,204 - 48,541,439 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (IEA)
cytoskeleton  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MCPH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.186,190,272 - 6,425,683 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl86,190,047 - 6,425,131 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605448,304,204 - 48,541,439 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MCPH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3886,406,627 - 6,648,508 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl86,406,592 - 6,648,508 (+)EnsemblGRCh38hg38GRCh38
GRCh3786,264,148 - 6,506,029 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3686,251,529 - 6,493,434 (+)NCBINCBI36Build 36hg18NCBI36
Build 3486,276,479 - 6,489,214NCBI
Celera86,241,660 - 6,478,643 (+)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef86,046,225 - 6,282,052 (+)NCBIHuRef
CHM1_186,352,911 - 6,590,285 (+)NCBICHM1_1
T2T-CHM13v2.086,161,207 - 6,402,976 (+)NCBIT2T-CHM13v2.0
Mcph1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39818,645,132 - 18,858,110 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl818,645,147 - 18,853,205 (+)EnsemblGRCm39 Ensembl
GRCm38818,595,116 - 18,808,089 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl818,595,131 - 18,803,189 (+)EnsemblGRCm38mm10GRCm38
MGSCv37818,595,173 - 18,803,189 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36818,595,150 - 18,803,166 (+)NCBIMGSCv36mm8
Celera818,728,614 - 18,936,696 (+)NCBICelera
Cytogenetic Map8A1.3NCBI
cM Map810.24NCBI
Mcph1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81677,724,251 - 77,926,773 (-)NCBIGRCr8
mRatBN7.21671,021,855 - 71,224,067 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1671,024,588 - 71,224,122 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01675,904,087 - 76,110,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1675,904,006 - 76,110,553 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01675,508,903 - 75,716,058 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41675,839,877 - 76,026,968 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1668,871,372 - 69,069,330 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
Mcph1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540354,143,454 - 54,273,201 (-)NCBIChiLan1.0ChiLan1.0
MCPH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2721,203,748 - 21,473,839 (+)NCBINHGRI_mPanPan1-v2
Mhudiblu_PPA_v08624,877 - 877,839 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.186,409,072 - 6,651,846 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl86,409,072 - 6,646,394 (+)Ensemblpanpan1.1panPan2
MCPH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11658,306,761 - 58,529,090 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1658,295,280 - 58,529,433 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1653,827,270 - 54,059,123 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01657,520,814 - 57,753,393 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1657,520,814 - 57,753,412 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11658,441,000 - 58,688,068 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01655,530,366 - 55,762,093 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01655,905,580 - 56,138,767 (-)NCBIUU_Cfam_GSD_1.0
Mcph1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049434,386,615 - 4,580,738 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366154,386,635 - 4,580,747 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366154,386,667 - 4,580,720 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCPH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1537,455,551 - 37,673,633 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11537,455,186 - 37,674,971 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21542,711,671 - 42,747,818 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Mcph1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248614,373,743 - 4,556,933 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007961604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007961606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007961607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007961608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007961609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007961610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007961611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007961612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037985351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037985352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037985353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037985354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037985355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037985356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037985358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037985359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000015096   ⟹   ENSCSAP00000013046
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl86,190,047 - 6,425,131 (+)Ensembl
RefSeq Acc Id: XM_007961604   ⟹   XP_007959795
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.186,190,272 - 6,425,683 (+)NCBI
Vero_WHO_p1.0NW_02366605448,304,204 - 48,539,422 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037985351   ⟹   XP_037841279
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605448,306,711 - 48,541,439 (+)NCBI
RefSeq Acc Id: XM_037985352   ⟹   XP_037841280
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605448,304,320 - 48,541,439 (+)NCBI
RefSeq Acc Id: XM_037985353   ⟹   XP_037841281
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605448,304,415 - 48,541,439 (+)NCBI
RefSeq Acc Id: XM_037985354   ⟹   XP_037841282
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605448,306,711 - 48,541,439 (+)NCBI
RefSeq Acc Id: XM_037985355   ⟹   XP_037841283
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605448,304,415 - 48,541,439 (+)NCBI
RefSeq Acc Id: XM_037985356   ⟹   XP_037841284
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605448,306,712 - 48,411,993 (+)NCBI
RefSeq Acc Id: XM_037985358   ⟹   XP_037841286
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605448,306,713 - 48,344,473 (+)NCBI
RefSeq Acc Id: XM_037985359   ⟹   XP_037841287
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605448,304,789 - 48,343,651 (+)NCBI
RefSeq Acc Id: XP_007959795   ⟸   XM_007961604
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RWQ7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000013046   ⟸   ENSCSAT00000015096
RefSeq Acc Id: XP_037841280   ⟸   XM_037985352
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RWQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841281   ⟸   XM_037985353
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RWQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841283   ⟸   XM_037985355
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RWQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841287   ⟸   XM_037985359
- Peptide Label: isoform X8
RefSeq Acc Id: XP_037841279   ⟸   XM_037985351
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RWQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841282   ⟸   XM_037985354
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RWQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841284   ⟸   XM_037985356
- Peptide Label: isoform X6
- UniProtKB: A0A0D9RWQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841286   ⟸   XM_037985358
- Peptide Label: isoform X7


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017002 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015096.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10190 UniProtKB/TrEMBL
InterPro BRCT_dom UniProtKB/TrEMBL
  BRCT_dom_sf UniProtKB/TrEMBL
  Microcephalin-like UniProtKB/TrEMBL
  Microcephalin_mammal UniProtKB/TrEMBL
KEGG Report csab:103215296 UniProtKB/TrEMBL
NCBI Gene MCPH1 ENTREZGENE
PANTHER MICROCEPHALIN UniProtKB/TrEMBL
  PTHR14625 UniProtKB/TrEMBL
Pfam Microcephalin UniProtKB/TrEMBL
  PTCB-BRCT UniProtKB/TrEMBL
PROSITE BRCT UniProtKB/TrEMBL
SMART BRCT UniProtKB/TrEMBL
Superfamily-SCOP SSF52113 UniProtKB/TrEMBL
UniProt A0A0D9RWQ7 ENTREZGENE, UniProtKB/TrEMBL