Mcph1 (microcephalin 1) - Rat Genome Database

Name: Mcph1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Mcph1 (microcephalin 1) Heterocephalus glaber

Analyze

Symbol:

Mcph1

Name:

microcephalin 1

RGD ID:

18918817

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN bone development (ortholog); cerebral cortex development (ortholog); establishment of mitotic spindle orientation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH breast cancer (ortholog); Breast Neoplasms (ortholog); Developmental Disabilities (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

microcephalin

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MCPH1 (microcephalin 1)	NCBI	Ortholog
Mus musculus (house mouse):	Mcph1 (microcephaly, primary autosomal recessive 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Mcph1 (microcephalin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mcph1 (microcephalin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MCPH1 (microcephalin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MCPH1 (microcephalin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mcph1 (microcephalin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MCPH1 (microcephalin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MCPH1 (microcephalin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624861	4,373,743 - 4,556,933 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast cancer (ISO)

Breast Neoplasms (ISO)

Developmental Disabilities (ISO)

Dwarfism (ISO)

endometrial cancer (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Lymphatic Malformation 10 (ISO)

microcephaly (ISO)

Nervous System Malformations (ISO)

oral squamous cell carcinoma (ISO)

Ovarian Neoplasms (ISO)

primary autosomal recessive microcephaly (ISO)

primary autosomal recessive microcephaly 1 (ISO)

renal carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bone development (ISO)

cerebral cortex development (ISO)

establishment of mitotic spindle orientation (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

neuronal stem cell population maintenance (ISO)

protein localization to centrosome (ISO)

regulation of centrosome cycle (ISO)

regulation of chromosome condensation (ISO)

regulation of gene expression (ISO)

regulation of inflammatory response (ISO)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

Additional References at PubMed

PMID:21993625	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Mcph1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624861	4,373,743 - 4,556,933 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

MCPH1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	6,406,627 - 6,648,508 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	6,406,592 - 6,648,508 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	6,264,148 - 6,506,029 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	6,251,529 - 6,493,434 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	6,276,479 - 6,489,214	NCBI
Celera	8	6,241,660 - 6,478,643 (+)	NCBI		Celera
Cytogenetic Map	8	p23.1	NCBI
HuRef	8	6,046,225 - 6,282,052 (+)	NCBI		HuRef
CHM1_1	8	6,352,911 - 6,590,285 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	6,161,207 - 6,402,976 (+)	NCBI		T2T-CHM13v2.0

Mcph1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	18,645,132 - 18,858,110 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	18,645,147 - 18,853,205 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	18,595,116 - 18,808,089 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	18,595,131 - 18,803,189 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	18,595,173 - 18,803,189 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	18,595,150 - 18,803,166 (+)	NCBI		MGSCv36	mm8
Celera	8	18,728,614 - 18,936,696 (+)	NCBI		Celera
Cytogenetic Map	8	A1.3	NCBI
cM Map	8	10.24	NCBI

Mcph1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	77,724,251 - 77,926,773 (-)	NCBI		GRCr8
mRatBN7.2	16	71,021,855 - 71,224,067 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	71,024,588 - 71,224,122 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	16	75,904,087 - 76,110,624 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	75,904,006 - 76,110,553 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	75,508,903 - 75,716,058 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	75,839,877 - 76,026,968 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	68,871,372 - 69,069,330 (-)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

Mcph1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955403	54,143,454 - 54,273,201 (-)	NCBI	ChiLan1.0	ChiLan1.0

MCPH1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	21,203,748 - 21,473,839 (+)	NCBI		NHGRI_mPanPan1-v2
Mhudiblu_PPA_v0	8	624,877 - 877,839 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	6,409,072 - 6,651,846 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	6,409,072 - 6,646,394 (+)	Ensembl	panpan1.1		panPan2

MCPH1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	58,306,761 - 58,529,090 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	58,295,280 - 58,529,433 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	53,827,270 - 54,059,123 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	57,520,814 - 57,753,393 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	57,520,814 - 57,753,412 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	58,441,000 - 58,688,068 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	55,530,366 - 55,762,093 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	55,905,580 - 56,138,767 (-)	NCBI		UU_Cfam_GSD_1.0

Mcph1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	4,386,615 - 4,580,738 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936615	4,386,635 - 4,580,747 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936615	4,386,667 - 4,580,720 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MCPH1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	37,455,551 - 37,673,633 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	37,455,186 - 37,674,971 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	42,711,671 - 42,747,818 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MCPH1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	6,190,272 - 6,425,683 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	6,190,047 - 6,425,131 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	48,304,204 - 48,541,439 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_004869587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_004869588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_004869589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021248189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01093335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AHKG01093336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AHKG01093337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH169534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_004869587 ⟹ XP_004869644

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624861	4,373,743 - 4,556,933 (+)	NCBI

RefSeq Acc Id:

XM_004869588 ⟹ XP_004869645

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624861	4,373,743 - 4,556,933 (+)	NCBI

RefSeq Acc Id:

XM_004869589 ⟹ XP_004869646

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624861	4,373,744 - 4,556,933 (+)	NCBI

RefSeq Acc Id:

XM_021248189 ⟹ XP_021103848

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624861	4,373,743 - 4,468,069 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_004869644	(Get FASTA)	NCBI Sequence Viewer
	XP_004869645	(Get FASTA)	NCBI Sequence Viewer
	XP_004869646	(Get FASTA)	NCBI Sequence Viewer
	XP_021103848	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EHB06907	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_004869644 ⟸ XM_004869587
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_004869645 ⟸ XM_004869588
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_021103848 ⟸ XM_021248189
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_004869646 ⟸ XM_004869589
- Peptide Label:	isoform X4

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Mcph1	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations