PMVK (phosphomevalonate kinase) - Rat Genome Database

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Pathways
Gene: PMVK (phosphomevalonate kinase) Chlorocebus sabaeus
Analyze
Symbol: PMVK
Name: phosphomevalonate kinase
RGD ID: 18556759
Description: ENCODES a protein that exhibits phosphomevalonate kinase activity (ortholog); INVOLVED IN isopentenyl diphosphate biosynthetic process, mevalonate pathway (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH cervical cancer (ortholog); esophageal cancer (ortholog); genetic disease (ortholog); FOUND IN peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1208,405,753 - 8,418,154 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_0236660388,229,305 - 8,242,091 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1208,893,297 - 8,906,882 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl208,894,786 - 8,906,873 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
peroxisome  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PMVK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1208,405,753 - 8,418,154 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_0236660388,229,305 - 8,242,091 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1208,893,297 - 8,906,882 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl208,894,786 - 8,906,873 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
PMVK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,924,740 - 154,942,658 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,924,732 - 154,937,008 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371154,897,216 - 154,915,134 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,163,832 - 153,176,108 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341151,710,280 - 151,722,540NCBI
Celera1127,968,233 - 127,980,509 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1126,259,154 - 126,271,445 (-)NCBIHuRef
CHM1_11156,293,587 - 156,305,863 (-)NCBICHM1_1
T2T-CHM13v2.01154,064,101 - 154,082,019 (-)NCBIT2T-CHM13v2.0
Pmvk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,361,848 - 89,376,321 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,361,758 - 89,376,323 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38389,454,541 - 89,469,014 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,454,541 - 89,469,013 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37389,263,040 - 89,272,931 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36389,545,243 - 89,554,933 (+)NCBIMGSCv36mm8
Celera389,494,449 - 89,504,138 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.13NCBI
Pmvk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,174,344 - 177,184,076 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2177,174,335 - 177,184,080 (+)EnsemblGRCr8
mRatBN7.22174,876,586 - 174,886,365 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,876,657 - 174,886,364 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2182,022,396 - 182,031,869 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,044,785 - 180,054,258 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,645,467 - 174,654,973 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd2176,346,568 - 176,356,134 (+)NCBI
Lyon_Normotensive2176,669,859 - 176,679,365 (+)NCBI
Lyon_Hypertensive2176,290,365 - 176,299,931 (+)NCBI
F344_StmMcwi2176,372,801 - 176,382,307 (+)NCBI
Rnor_6.02188,784,329 - 188,793,890 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,784,222 - 188,793,895 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.02208,198,238 - 208,207,794 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42181,655,658 - 181,665,214 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2168,817,684 - 168,827,240 (+)NCBICelera
RGSC_v3.12181,605,763 - 181,615,319 (+)NCBI
Cytogenetic Map2q34NCBI
Pmvk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,421,562 - 1,440,038 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049555451,421,562 - 1,440,038 (-)NCBIChiLan1.0ChiLan1.0
PMVK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2194,903,218 - 94,915,762 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,635,585 - 94,647,862 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01130,273,246 - 130,286,614 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,882,837 - 133,894,818 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,882,840 - 133,894,818 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
PMVK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,532,968 - 42,563,618 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,533,217 - 42,540,625 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha742,024,242 - 42,060,899 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0742,403,302 - 42,439,920 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,403,373 - 42,414,566 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,182,992 - 42,219,593 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,236,594 - 42,273,239 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,520,185 - 42,556,794 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pmvk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap111127,493,233 - 127,502,265 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440505825,443,172 - 25,452,234 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,473,359 - 4,482,631 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,473,554 - 4,482,396 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PMVK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,861,712 - 94,874,771 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1494,861,500 - 94,913,743 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,634,269 - 103,685,533 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pmvk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248852,544,136 - 2,552,591 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046248852,543,862 - 2,553,237 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl191,682,527 - 1,689,876 (+)Ensembl
Pmvk
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1364,199,570 - 64,208,856 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in PMVK
376 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000016562   ⟹   ENSCSAP00000016068
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl208,894,786 - 8,906,873 (+)Ensembl
RefSeq Acc Id: XM_007976951   ⟹   XP_007975142
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
mChlSab1.0.hap1208,405,753 - 8,418,154 (+)NCBI
Vero_WHO_p1.0NW_0236660388,229,305 - 8,242,091 (+)NCBI
ChlSab1.1208,893,297 - 8,906,882 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037997863   ⟹   XP_037853791
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
mChlSab1.0.hap1208,406,058 - 8,418,154 (+)NCBI
Vero_WHO_p1.0NW_0236660388,229,824 - 8,242,091 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007975142 (Get FASTA)   NCBI Sequence Viewer  
  XP_037853791 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016068
  ENSCSAP00000016068.1
RefSeq Acc Id: XP_007975142   ⟸   XM_007976951
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S5C9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000016068   ⟸   ENSCSAT00000016562
RefSeq Acc Id: XP_037853791   ⟸   XM_037997863
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001966 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016562.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Pmev_kin_anim UniProtKB/TrEMBL
KEGG Report csab:103223914 UniProtKB/TrEMBL
NCBI Gene PMVK ENTREZGENE
PANTHER PHOSPHOMEVALONATE KINASE UniProtKB/TrEMBL
  PTHR13101 UniProtKB/TrEMBL
Pfam P-mevalo_kinase UniProtKB/TrEMBL
PIRSF PMK_anim UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9S5C9 ENTREZGENE, UniProtKB/TrEMBL