Pmvk (phosphomevalonate kinase) - Rat Genome Database

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Gene: Pmvk (phosphomevalonate kinase) Ictidomys tridecemlineatus
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Symbol: Pmvk
Name: phosphomevalonate kinase
RGD ID: 12468155
Description: ENCODES a protein that exhibits phosphomevalonate kinase activity (ortholog); INVOLVED IN isopentenyl diphosphate biosynthetic process, mevalonate pathway (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphomevalonate kinase, transcript variant X1; phosphomevalonate kinase, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,443,172 - 25,452,234 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,473,359 - 4,482,631 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,473,554 - 4,482,396 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
peroxisome  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pmvk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,443,172 - 25,452,234 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,473,359 - 4,482,631 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,473,554 - 4,482,396 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PMVK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,924,740 - 154,942,658 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,924,740 - 154,936,719 (-)EnsemblGRCh38hg38GRCh38
GRCh371154,897,216 - 154,915,134 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,163,832 - 153,176,108 (-)NCBINCBI36Build 36hg18NCBI36
Build 341151,710,280 - 151,722,540NCBI
Celera1127,968,233 - 127,980,509 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1126,259,154 - 126,271,445 (-)NCBIHuRef
CHM1_11156,293,587 - 156,305,863 (-)NCBICHM1_1
T2T-CHM13v2.01154,064,101 - 154,082,019 (-)NCBIT2T-CHM13v2.0
Pmvk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,361,848 - 89,376,321 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,361,848 - 89,376,320 (+)EnsemblGRCm39 Ensembl
GRCm38389,454,541 - 89,469,014 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,454,541 - 89,469,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,263,040 - 89,272,931 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,545,243 - 89,554,933 (+)NCBIMGSCv36mm8
Celera389,494,449 - 89,504,138 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.13NCBI
Pmvk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,174,344 - 177,184,076 (+)NCBIGRCr8
mRatBN7.22174,876,586 - 174,886,365 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,876,657 - 174,886,364 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,022,396 - 182,031,869 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,044,785 - 180,054,258 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,645,467 - 174,654,973 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02188,784,329 - 188,793,890 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,784,222 - 188,793,895 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,198,238 - 208,207,794 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,655,658 - 181,665,214 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12181,605,763 - 181,615,319 (+)NCBI
Celera2168,817,684 - 168,827,240 (+)NCBICelera
Cytogenetic Map2q34NCBI
Pmvk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,421,562 - 1,440,038 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,421,562 - 1,440,038 (-)NCBIChiLan1.0ChiLan1.0
PMVK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2194,903,218 - 94,915,762 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,635,585 - 94,647,862 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01130,273,246 - 130,286,614 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,882,837 - 133,894,818 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,882,840 - 133,894,818 (-)Ensemblpanpan1.1panPan2
PMVK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,532,968 - 42,563,618 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,533,217 - 42,540,625 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,024,242 - 42,060,899 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,403,302 - 42,439,920 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,403,373 - 42,414,566 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,182,992 - 42,219,593 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,236,594 - 42,273,239 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,520,185 - 42,556,794 (+)NCBIUU_Cfam_GSD_1.0
PMVK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,861,712 - 94,874,771 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,861,500 - 94,913,743 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,634,269 - 103,685,533 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PMVK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1208,893,297 - 8,906,882 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl208,894,786 - 8,906,873 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660388,229,305 - 8,242,091 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pmvk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248852,543,862 - 2,553,237 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248852,544,136 - 2,552,591 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000003632   ⟹   ENSSTOP00000003252
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365804,473,359 - 4,482,631 (-)Ensembl
RefSeq Acc Id: XM_005331310   ⟹   XP_005331367
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505825,443,172 - 25,452,028 (-)NCBI
SpeTri2.0NW_0049365804,473,554 - 4,482,396 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013361222   ⟹   XP_013216676
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505825,443,172 - 25,446,902 (-)NCBI
SpeTri2.0NW_0049365804,473,554 - 4,477,482 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040287646   ⟹   XP_040143580
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505825,443,172 - 25,452,191 (-)NCBI
RefSeq Acc Id: XM_040287647   ⟹   XP_040143581
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505825,443,172 - 25,451,991 (-)NCBI
RefSeq Acc Id: XM_040287648   ⟹   XP_040143582
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505825,443,172 - 25,452,234 (-)NCBI
RefSeq Acc Id: XP_005331367   ⟸   XM_005331310
- Peptide Label: isoform X1
- UniProtKB: I3M2M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013216676   ⟸   XM_013361222
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040143582   ⟸   XM_040287648
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040143580   ⟸   XM_040287646
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040143581   ⟸   XM_040287647
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000003252   ⟸   ENSSTOT00000003632


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003639 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003632.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Pmev_kin_anim UniProtKB/TrEMBL
NCBI Gene Pmvk ENTREZGENE
PANTHER PHOSPHOMEVALONATE KINASE UniProtKB/TrEMBL
  PTHR13101 UniProtKB/TrEMBL
Pfam P-mevalo_kinase UniProtKB/TrEMBL
PIRSF PMK_anim UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3M2M8 ENTREZGENE, UniProtKB/TrEMBL