PMVK (phosphomevalonate kinase) - Rat Genome Database

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Gene: PMVK (phosphomevalonate kinase) Sus scrofa
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Symbol: PMVK
Name: phosphomevalonate kinase
RGD ID: 14180302
Description: ENCODES a protein that exhibits phosphomevalonate kinase activity (ortholog); INVOLVED IN cholesterol biosynthetic process (ortholog); isopentenyl diphosphate biosynthetic process, mevalonate pathway (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); peroxisome (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: PMKase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,861,712 - 94,874,771 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,861,500 - 94,913,743 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,634,269 - 103,685,533 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISS)
peroxisome  (ISO,ISS)

Molecular Function

References
Additional References at PubMed
PMID:7814412   PMID:8663599   PMID:14681463   PMID:15679890   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PMVK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,861,712 - 94,874,771 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,861,500 - 94,913,743 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,634,269 - 103,685,533 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PMVK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,924,740 - 154,942,658 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,924,740 - 154,936,719 (-)EnsemblGRCh38hg38GRCh38
GRCh371154,897,216 - 154,915,134 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,163,832 - 153,176,108 (-)NCBINCBI36Build 36hg18NCBI36
Build 341151,710,280 - 151,722,540NCBI
Celera1127,968,233 - 127,980,509 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1126,259,154 - 126,271,445 (-)NCBIHuRef
CHM1_11156,293,587 - 156,305,863 (-)NCBICHM1_1
T2T-CHM13v2.01154,064,101 - 154,082,019 (-)NCBIT2T-CHM13v2.0
Pmvk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,361,848 - 89,376,321 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,361,848 - 89,376,320 (+)EnsemblGRCm39 Ensembl
GRCm38389,454,541 - 89,469,014 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,454,541 - 89,469,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,263,040 - 89,272,931 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,545,243 - 89,554,933 (+)NCBIMGSCv36mm8
Celera389,494,449 - 89,504,138 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.13NCBI
Pmvk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,174,344 - 177,184,076 (+)NCBIGRCr8
mRatBN7.22174,876,586 - 174,886,365 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,876,657 - 174,886,364 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,022,396 - 182,031,869 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,044,785 - 180,054,258 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,645,467 - 174,654,973 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02188,784,329 - 188,793,890 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,784,222 - 188,793,895 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,198,238 - 208,207,794 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,655,658 - 181,665,214 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12181,605,763 - 181,615,319 (+)NCBI
Celera2168,817,684 - 168,827,240 (+)NCBICelera
Cytogenetic Map2q34NCBI
Pmvk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,421,562 - 1,440,038 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,421,562 - 1,440,038 (-)NCBIChiLan1.0ChiLan1.0
PMVK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2194,903,218 - 94,915,762 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,635,585 - 94,647,862 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01130,273,246 - 130,286,614 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,882,837 - 133,894,818 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,882,840 - 133,894,818 (-)Ensemblpanpan1.1panPan2
PMVK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,532,968 - 42,563,618 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,533,217 - 42,540,625 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,024,242 - 42,060,899 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,403,302 - 42,439,920 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,403,373 - 42,414,566 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,182,992 - 42,219,593 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,236,594 - 42,273,239 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,520,185 - 42,556,794 (+)NCBIUU_Cfam_GSD_1.0
Pmvk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,443,172 - 25,452,234 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,473,359 - 4,482,631 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,473,554 - 4,482,396 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PMVK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1208,893,297 - 8,906,882 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl208,894,786 - 8,906,873 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660388,229,305 - 8,242,091 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pmvk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248852,543,862 - 2,553,237 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248852,544,136 - 2,552,591 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PMVK
1541 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000007157   ⟹   ENSSSCP00000006964
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl494,861,694 - 94,878,921 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000096702   ⟹   ENSSSCP00000076215
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl494,861,712 - 94,874,771 (+)Ensembl
RefSeq Acc Id: NM_001168416   ⟹   NP_001161888
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1494,861,668 - 94,873,211 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013996999   ⟹   XP_013852453
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1494,861,500 - 94,913,743 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088511   ⟹   XP_020944170
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1494,864,459 - 94,873,211 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013852453   ⟸   XM_013996999
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001161888   ⟸   NM_001168416
- UniProtKB: F1RGP9 (UniProtKB/Swiss-Prot),   Q29081 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_020944170   ⟸   XM_021088511
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSSSCP00000006964   ⟸   ENSSSCT00000007157
Ensembl Acc Id: ENSSSCP00000076215   ⟸   ENSSSCT00000096702


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006535 Ensembl
  ENSSSCG00000055689 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00025029408 UniProtKB/Swiss-Prot
  ENSSSCG00035080644 UniProtKB/Swiss-Prot
  ENSSSCG00040074485 UniProtKB/Swiss-Prot
  ENSSSCG00045015312 UniProtKB/Swiss-Prot
  ENSSSCG00050020471 UniProtKB/Swiss-Prot
  ENSSSCG00055010989 UniProtKB/Swiss-Prot
  ENSSSCG00070027918 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000096702 ENTREZGENE
  ENSSSCT00000096702.1 UniProtKB/Swiss-Prot
  ENSSSCT00025039977.1 UniProtKB/Swiss-Prot
  ENSSSCT00035110593.1 UniProtKB/Swiss-Prot
  ENSSSCT00040102979.1 UniProtKB/Swiss-Prot
  ENSSSCT00045026000.1 UniProtKB/Swiss-Prot
  ENSSSCT00050027646.1 UniProtKB/Swiss-Prot
  ENSSSCT00055021592.1 UniProtKB/Swiss-Prot
  ENSSSCT00070056028.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pmev_kin_anim UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100152301 UniProtKB/Swiss-Prot
NCBI Gene PMVK ENTREZGENE
PANTHER PHOSPHOMEVALONATE KINASE UniProtKB/Swiss-Prot
  PHOSPHOMEVALONATE KINASE UniProtKB/TrEMBL
  PHOSPHOMEVALONATE KINASE UniProtKB/TrEMBL
  PTHR13101 UniProtKB/Swiss-Prot
Pfam P-mevalo_kinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF PMK_anim UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A0A8D0P7Q6_PIG UniProtKB/TrEMBL
  F1RGP9 ENTREZGENE
  PMVK_PIG UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary D0G7E0 UniProtKB/TrEMBL
  F1RGP9 UniProtKB/Swiss-Prot
VGNC ID VGNC:98835 ENTREZGENE