Advanced Search (OLGA)

Gene: TRPA1 (transient receptor potential cation channel subfamily A member 1) Chlorocebus sabaeus

Analyze

Symbol:

TRPA1

Name:

transient receptor potential cation channel subfamily A member 1

RGD ID:

18556646

Description:

ENCODES a protein that exhibits osmolarity-sensing monoatomic cation channel activity (ortholog); voltage-gated calcium channel activity (ortholog); INVOLVED IN calcium ion transmembrane import into cytosol (ortholog); calcium ion transport (ortholog); cellular response to caffeine (ortholog); ASSOCIATED WITH Abdominal Pain (ortholog); asthma (ortholog); Bronchial Hyperreactivity (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC103236955

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	67,698,067 - 67,754,407 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	67,698,786 - 67,751,885 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	73,636,128 - 73,694,618 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Abdominal Pain (ISO)

asthma (ISO)

Bronchial Hyperreactivity (ISO)

Cold Hypersensitivity (ISO)

Cough (ISO)

diabetic neuropathy (ISO)

familial episodic pain syndrome 1 (ISO)

Hyperalgesia (ISO)

Inflammation (ISO)

overactive bladder syndrome (ISO)

Pain (ISO)

Peripheral Nerve Injuries (ISO)

Sneezing (ISO)

Spinal Cord Injuries (ISO)

Visceral Pain (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion transmembrane import into cytosol (ISO)

calcium ion transmembrane transport (IEA)

calcium ion transport (IEA,ISO)

calcium-mediated signaling (IEA)

cell surface receptor signaling pathway (IEA)

cellular response to caffeine (ISO)

cellular response to carbon dioxide (ISO)

cellular response to cold (ISO)

cellular response to heat (ISO)

cellular response to hydrogen peroxide (IEA)

detection of chemical stimulus involved in sensory perception of pain (IEA,ISO)

detection of mechanical stimulus involved in sensory perception (IEA)

detection of mechanical stimulus involved in sensory perception of pain (IEA,ISO)

intracellular calcium ion homeostasis (IEA)

monoatomic ion transmembrane transport (IEA)

monoatomic ion transport (IEA)

positive regulation of insulin secretion involved in cellular response to glucose stimulus (ISO)

positive regulation of monoatomic anion transport (ISO)

protein homotetramerization (IEA)

regulation of blood circulation (ISO)

regulation of neuronal action potential (ISO)

response to cold (IEA,ISO)

response to hydrogen peroxide (IEA,ISO)

response to organic cyclic compound (IEA)

response to pain (IEA,ISO)

response to xenobiotic stimulus (IEA,ISO)

sensory perception of pain (IEA)

thermoception (IEA,ISO)

transmembrane transport (IEA)

urinary bladder smooth muscle contraction (ISO)

Cellular Component

apical plasma membrane (ISO)

axon (ISO)

membrane (IEA)

plasma membrane (IEA)

stereocilium bundle (IEA)

transmembrane transporter complex (IEA)

Molecular Function

calcium channel activity (IEA)

channel activity (IEA)

identical protein binding (IEA)

intracellularly gated calcium channel activity (IEA)

monoatomic ion channel activity (IEA)

osmolarity-sensing monoatomic cation channel activity (ISO)

protein binding (ISO)

temperature-gated cation channel activity (IEA)

transmembrane transporter activity (IEA)

voltage-gated calcium channel activity (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

TRPA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	67,698,067 - 67,754,407 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	67,698,786 - 67,751,885 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	73,636,128 - 73,694,618 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TRPA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	72,021,250 - 72,090,010 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	72,019,917 - 72,075,584 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	72,933,485 - 72,987,819 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	73,096,040 - 73,150,373 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	73,096,039 - 73,150,373	NCBI
Celera	8	68,932,963 - 68,987,289 (-)	NCBI		Celera
Cytogenetic Map	8	q21.11	NCBI
HuRef	8	68,428,222 - 68,482,529 (-)	NCBI		HuRef
CHM1_1	8	72,986,840 - 73,041,189 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	72,456,370 - 72,525,074 (-)	NCBI		T2T-CHM13v2.0

Trpa1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	14,942,868 - 14,989,086 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	14,942,872 - 14,989,086 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	14,872,644 - 14,918,862 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	14,872,648 - 14,918,862 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	14,862,729 - 14,908,943 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	14,857,862 - 14,904,076 (-)	NCBI		MGSCv36	mm8
Celera	1	14,822,489 - 14,871,741 (-)	NCBI		Celera
Cytogenetic Map	1	A3	NCBI
cM Map	1	4.5	NCBI

Trpa1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	9,163,060 - 9,217,325 (+)	NCBI		GRCr8
mRatBN7.2	5	4,379,862 - 4,434,133 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	4,379,999 - 4,433,570 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	6,513,645 - 6,566,735 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	8,152,548 - 8,205,642 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	7,846,752 - 7,899,532 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	3,783,247 - 3,836,485 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	3,783,247 - 3,836,485 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	3,764,339 - 3,818,781 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	3,531,163 - 3,584,401 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	3,531,162 - 3,584,401 (+)	NCBI
Celera	5	3,971,809 - 4,024,939 (+)	NCBI		Celera
Cytogenetic Map	5	q11	NCBI

Trpa1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955444	7,876,429 - 7,921,372 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955444	7,876,284 - 7,922,010 (+)	NCBI	ChiLan1.0	ChiLan1.0

TRPA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	87,759,979 - 87,813,795 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	63,389,306 - 63,443,548 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	68,551,685 - 68,605,336 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	70,208,697 - 70,262,802 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	70,210,352 - 70,262,627 (-)	Ensembl	panpan1.1		panPan2

TRPA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	20,951,736 - 21,000,956 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	20,951,716 - 21,001,208 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	21,214,374 - 21,266,355 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	21,050,161 - 21,102,458 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	21,050,159 - 21,111,731 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	21,102,449 - 21,154,677 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	21,151,285 - 21,203,541 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	21,431,610 - 21,483,919 (-)	NCBI		UU_Cfam_GSD_1.0

Trpa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	58,307,190 - 58,354,763 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936648	1,094,460 - 1,141,394 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936648	1,094,460 - 1,141,394 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRPA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	63,508,104 - 63,558,484 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	63,493,374 - 63,558,486 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	69,132,584 - 69,265,553 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Trpa1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624744	18,997,462 - 19,042,227 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624744	18,997,273 - 19,042,838 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
55	33	18	31	31	42	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008000859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038000396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000011700 ⟹ ENSCSAP00000009766

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	8	67,698,786 - 67,751,885 (-)	Ensembl

RefSeq Acc Id:

XM_008000859 ⟹ XP_007999050

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	67,698,067 - 67,754,407 (-)	NCBI
Vero_WHO_p1.0	NW_023666039	73,636,161 - 73,693,413 (+)	NCBI

Sequence:

show sequence

ATTTGATAATAAAAATTACCCTTCAGAAAATTTCTAGCAAGGTTTCTTTTCTCTAATAATTATC
ATTTTAAAAGTATAATTGATATAAAAAGCTTGCACATTATTGCTATTCATCAATAAACTTCAAA
TGAAATAAGATCCTGATTGTAAATAGCTAGCTACCATCTTGTTCCTGTCTACATTTTGCATTTT
AAGACCAAGATTTGCAATTAATCTTGCAATTAGAGGAAGCTGCCCTGCCTGCCTATGAAAAATA
TATTTTTGATGGGTAGGAAATAATTTAACAATTAAGAAGAAATAGTCATGGGAATTCCTGAGAG
GTCTTAGGAAGACACTGCCTGAAAAATGCCTTAAATGAACAAGACCCTCGTAATATTTTTTAAA
AATTAAACTATCTTTTAATCTCTTTGCTTTTATAAGCAGAAAGCAGGAAAATACTCATATTTAT
ATTAACCATCTGTATTTTTCAGTGTTAAAGACAGAGAAGACAAATTAAAAAGAATACCTGCTTT
GGGGAATGTCAATAGGGTAGAGAAGCAAGAATGCAGAAAGCATCATTCTGTGCTGGCAGCTGAC
CCCAGGGGATATTACAAAGGAGGGGTGCTGTTGGCCTGGAGCCAATCTTCTCCCAGAATTCCCC
TCAACCGTCCATTGCTGGAGTTCCCTGAACCGGGCCACGCTGCCCCCCACCCCGCAACCCCCCT
CACCCCCTGTCTCTCGGGGCCAACAGGGTATCTGATGCTTGCTACCATGACATGCTCACTGCCC
CAGCTTCCAAAATGACCACTTTGAACATCCTCTTTATTCCCTTTTTGCCTTAGTGACCCTTTCC
AGCTAAGTGTTGTGAGAAAAGCTATTGATCAAAATAGTCAATGATAAAAAATAAACTCTTAATA
TTCCTATGAGGCATTTCCATTTTAAAACATTAACCCGGTATATGGAAAATGTCAGGTAGACAGC
AATGGCTCAATGAGTTATTCTTTGTACCCAACCCTTGGATTCTTTTCTTTATTGGTTTCTCCAA
ATGCATTACCTCCTTCAACTAAATCATAGCAAGCTGTGCAACTGATTCTTGTCTTACACACCCT
GAACGGATGCTGGTGGGAAAAGAGTGCAAAGGTGAAGTCGAACACCTGTATCCTCCAGCAAGTC
ATACTCATGGACTCATGATGTGGTTAAGTTCAACATAATCCTTCCAAGGAATTCCACTCCAGGG
GTGGAATTGATGGCAACCTGCCATACCCATTGGAAGTTTTGGGGGGACTTTTCATAGTTCCTCA
ACGTCATCATGTCCACTCTGCCTAGCCCTAAGCTCAGCCCACCATAGCCCCTAGGTCAGACAGT
CCACAAACCGTTACTGAGTGCACCTTTATGCCAGGTCCTGGATCCACGGGGGTCTTGTGCTAAG
TGCTGGATATGAGCAGGTGAATACGACAATCCAGGGCCTTCAGGAAGCACAGTCTGTCAAAGCA
AAAGACTGTCAAAGCTACGTTCTGTCCTGTGGAAGGTATAATCAGCCTTAGAAAGAAGGTTTCT
TGCTTTCTAGCCTTGTTAACTTGAACTTACCGCCAACAGTTTCAGAGGCTCCCTTGTCTGTACA
TAAAAGTAGAACCAGCCTCTTCGATTGAAAGGGAACGCCTTTTATTCTACACAATTGACACTTA
ATGAAGAGCAGTCCTATAAATGTAAGTCTCTCATACAAAGCTGGGGACAAACAAACTTGCATCA
GTCAGCAGTGGCTTACGTTCAACCTGACCTTTTTATTAACCACCTTTAAACACCAAAGCGTGAG
GGGGATCAATATTATTATCCACAGGAAATGAGACCTGATATTCACAGGGACTTAATCTAGTCCC
TCAAACCAGTGCTAGGATTTAGCTATTTTCCCAAATGTTTGGAACGAGAAGTTTTGTTAAAAAC
TTTATTTCCAAATCAAAGAGGCCCCCAGAAGAAGGTGCACGTGGTGGGAAAGACAGGTCCATAT
GATTTTAGTTAGAAAAAACTCCTGAAAACTAAAAATCTTTCCAATGTACACAGTCATTCTCTCT
TCCTCTCTCTTTACCGCCCCCACACTCCACACACACACTCACATACACGGTTGGGGGGCAGGGC
AAGGGGGCTCTTAGTGTGTTTATTGTAACAAATTCCCTGCATCCACCCCGACCTGACACGCTTA
CTCTGGGAGCGCGCTGCTGCAGCTGCAGGACAGCGGGACGGGCGAGTCACTTTGTCCCTGCAGG
GGCGAGTCCAAAGCAGACGCGGCGCCGCCGCCTTCTTTGCGAAGGAGGTCTGAGTTTCTACCTC
CTTTCCGCGCCCCGCCTGCTTCCTGCACTACAAAAGTAGCGCGGTACTGAGAACTCCTTCCAGA
AGTTCTGCAGCGCTCCGGCGGAGGGACTTTTTCGCTGCCTGTGAGCTGCAGCGCTGGAGAGCTC
GAGCTCGCGCGGAACCCAGCGCCTGGCTAGCTGACAGCGCACTCTCGCCTCAGGTGCCCGCGCG
CGTGGTGAGCAGCTGCACCAGGTGGCGTCCGGGGTGGGGTCAATGAAGCGCAGCCTGAGGAAGA
TGTGGCGCCCTGGAGAAAAGAAGGAGCCCCAGGGTGTTGTTTATGAGGATGTGCAGGACGACAC
GGACGATTGCAAGGAAACGCTTAAGGTGGTTTTTGAAGGAAGTGCATATGGATTACAAAACTAT
AATAAACAAAAGAAATTAAAAAGATGTGATGATATGGACACCTTCTTCTTGCATGATGCCGCAG
CAGAAGGCCAAATTGAGCTAATGGAGAAGATCACCAGAGATTCCTCTTTGGAAGTGCTGAATGA
AATGGATGATTATGGAAATACCCCTCTGCATTGTGCTGTAGAAAAAAACCAAATTGAAAGTGTT
AAGTTTCTTCTCAGCAGAGGAGCAAACCCAAACCTCCGAAACTTCAACATGATGGCGCCCCTCC
ACTTAGCTGTGCAGGGCACGCACAACGAGGTGATGAAGGTCTTGCTTGAACATAAAACTATTGA
TATTAATTTGGAGGGAGAAAATGGAAACACAGCTGTGATCATTGCGTGCACCACAAATAATAGT
GAAGCACTGCAGATTTTGCTTAACAAAGGAGCTAAGCCATGTAAATCAAATAAATGGGGATGTT
TCCCTATTCACCAAGCTGCATTTTCAGGTTCCAAAGAATGCATGGAAATAATACTAAGGTTTGG
TGAAGAGCATGGGTACAGTAGACAGTTGCACATTAACTTTGTGAATAATGGGAAAGCCAGCCCT
CTCCACCTGGCTGTGCAAAATGGTGACTTGGAAATGATCAAAATGTGCCTGGACAATGGTGCAC
AAATAGACCCAGTGGAGAAGGGAAGGTGCACAGCTATTCATTTTGCTGCCACCCAGGGAGCCAC
TGAGATTGTTAAATTGATGATATCGTCCTATTCTGGTAGCGTGGATATTGTTAACACAACCGAT
GGAAGTCATGAGACCATGCTTCACAGAGCTTCATTATTTGATCACCATGAACTAGCAGACTATT
TAATTTCAGTGGGAGCAGATATTAATAAGATCGATTCTGAAGGACGCTCTCCACTTATATTAGC
AACTGCTTCTGCATCTTGGAATATTGTAAATTTGCTACTCTCTAAAGGTGCCCAGGTAGACATA
AAAGATAATTTTGGACGTAATTTTCTGCATTTAACTGTACAGCAACCTTATGGATTAAAAAATC
TGCGACCTGAATTTATGCAGATGCAACAGATCAAAGAGCTGGTAATGGATGAAGACAATGATGG
GTGTACTCCTCTACATTATGCATGTAGACAGGGGGGCCCTGATTCTGTAAATAACCTTCTTGGC
TTTAATGTATCCATTCATTCCAAAAGCAAAGATAAGAAATCACCTCTGCATTTTGCAGCCAGTT
ACGGGCGTATCAATACCTGTCAGAGGCTCCTACAAGACATAAGTGATACGAGGCTTCTGAATGA
AGGGGACCTTCATGGAATGACTCCTCTCCATCTGGCAGCAAAGAATGGACATGATAAAGTAGTT
CAGCTTCTTCTGAAAAAAGGTGCATTGTTTCTCAGTGACCACAATGGCTGGACGGCTTTGCATC
ATGCGTCCATGGGCGGGTACACTCAGACGATGAAGGTCATTCTTGATACTAATTTGAAGTGCAC
AGATCGCCTGGATGAAGACGGGAACACTGCACTTCACTTTGCTGCAAGGGAAGGCCACGCCAAA
GCCGTTGCGCTGCTTCTGAGCCACAATGCTGACATAGTCCTGAACAAGCAGCAAGCCTCCTTTT
TGCACCTTGCACTTCACAATAAGAGGAAGGAGGTGGTTCTTACAATCATCAGGAGCAAAAGATG
GGATGAATGTCTTAAGGTTTTTAGTCATAATTCTCCAGGCAACAAATGTCCAATTACAGAAATG
ATAGAATACCTCCCTGAGTGCATGAAGGTACTTTTAGATTTCTGCATGTTGCATTCTACAGAAG
ACAAGTCCTGCCGAGACTACTATATCGAGTATAATTTCAAATATCTTCAATGCCCATTAGAATT
CACCAAAAAAACACCTACACAGGATGTTATATATGAACCTCTTACAGCCCTCAATGCAATGGTA
CAAAATAACCGCATAGAGCTTCTCAATCATCCTGTGTGTAAAGAATATTTACTCATGAAATGGT
TGGCTTATGGATTTAGAGCTCATATGATGAATTTAGGATCTTACTGTCTTGGTCTCATACCTAT
GACCATTCTCGTTGTCAATATAAAACCAGGAATGGCTTTCAACTCAACCGGAATCATCAATGAA
ACTAGTGATCATTCAGAAATACTAGATACCACGAATTCATATCTAATAAAAACTTGTATGATTT
TAGTGTTTTTATCAAGTATATTTGGGTATTGCAAAGAAGCGGGGCAAATTTTCCAACAGAAAAG
GAATTATTTTATGGATATGAACAATGTTTTGGAATGGATTATCTACACGACGGGCATCATTTTT
GTGCTGCCCTTGTTCGTTGAAATACCAGCTCATCTGCAGTGGCAATGTGGAGCAATTGCTGTTT
ACCTCTATTGGATGAATTTCTTATTGTATCTTCAAAGATTTGAAAATTGTGGAATTTTTATTGT
TATGTTGGAGGTAATTTTGAAAACTTTATTGAGGTCTACAGTTGTATTTATCTTCCTTCTTCTG
GCTTTTGGACTCAGCTTTTACATCCTCCTGAATTTACAGGATCCCTTCAGCTCTCCATTGCTTT
CTATAATCCAGACCTTCAGCATGATGCTAGGAGATATCAATTATCGAGAGTCCTTCCTAGAACC
ATATCTGAGAAATGAATTGGCACATCCAGTTCTGTCCTTTGCACAACTTATTTCCTTCACAATA
TTTGTCCCAATTGTCCTCATGAATTTACTTATTGGTTTGGCAGTTGGTGATATTGCTGAGGTCC
AGAAACATGCATCATTGAAGAGGATAGCTATGCAGGTGGAACTTCATACCAGCTTAGAGAAGAA
GCTGCCACTTTGGTTTCTACGCAAAGTGGATCAGAAATCCATCATCGTGTATCCCAACAAACCC
AGATGTGGTGGGCTATTATTCTATATATTCTATTTTTTATTTTGCACTGGAGAAATAAGACAAG
AAATACCAAATGCTGATACGTCTTTAGAAATGGAAATATTAAAGCAGAAATACCGGCTGAAGGA
TCTTACTTTTCTCCTGGAAAAACAGCATGAGCTCATTAAACTGATCATTCAGAAGATGGAGATC
ATCTCTGAGACAGAGGATGAAGATAACCATTGTTCTTTTCAAGACAGGTTTAAGAAAGAGCAGA
TGGAACAAAGGAATAGCAGATGGAATACTGTGTTGAGAGCAGTCAAGGCAAAAACACACCATCT
TGAGCCTTAGCTCCTCAGACCTTCAATGAGGCTTCTAATAGGGGGGTGCATGACTTGCTGGTTC
TAATTTTCAGTTTAAAAAGAGTGAGGAAGAAGCAGAAATCTGATTTCACTACATGTGAAATCAT
GGTTCCTGCATGCTATATAAAAGTAAACCATCTTTTATCCTCTACTCATATTTTCTACCAATCA
CTATGTATTGGGGATATCTTTGCAGATATGTTCAAATTGGACTTGACTTTGATGAGAGATAATC
TCATTATTTGAATGGGTAGAAAATGAATTTGCTAGAACACACATATTTAATGAAAAGAAGTAAT
AAATGTAACTACTAAGCTAGAATGCAAATGTCAGTACTAAATTCCTGCTTGCTAATTGCCTAAT
ATGTGATGCCCTAGAAAATAGTCACAAGTATTAATAATGCCTTAGATGATAGTCTTAAATATTA
GGTTGAGGTCTACCTAACCTAAGCTTCTTCTTGGAAAGCTTCTTCATGTTGAAAGAACCTGTGG
GTGGCACCATGTGCACTATTCTGTTCCTACTGTGATGAATAGCCCCACCCTTCTTGCTGTCCCC
AACACACCTGATGTCACTTTGAGCCATATAGTTGAAGCAAAAATTAATAGGCCTTATGATATGC
ATGAATTTTACTGTAGATAATATATGTTGTTTCTGTTTTTGTTTGCCAGTGAGCATAATAAATG
TAAAACCTATATAGTATCCCTGTCA

hide sequence

RefSeq Acc Id:

XM_038000396 ⟹ XP_037856324

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666039	73,636,128 - 73,694,618 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007999050	(Get FASTA)	NCBI Sequence Viewer
	XP_037856324	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000009766
	ENSCSAP00000009766.1

RefSeq Acc Id:	XP_007999050 ⟸ XM_008000859
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RMC7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000009766 ⟸ ENSCSAT00000011700

RefSeq Acc Id:	XP_037856324 ⟸ XM_038000396
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000013690	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000011700.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
InterPro	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
	Ion_trans_dom	UniProtKB/TrEMBL
	TRP_cation_channel	UniProtKB/TrEMBL
KEGG Report	csab:103236955	UniProtKB/TrEMBL
NCBI Gene	LOC103236955	ENTREZGENE
PANTHER	TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS	UniProtKB/TrEMBL
	TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS	UniProtKB/TrEMBL
Pfam	Ank	UniProtKB/TrEMBL
	Ank_2	UniProtKB/TrEMBL
	Ion_trans	UniProtKB/TrEMBL
PRINTS	ANKYRIN	UniProtKB/TrEMBL
PROSITE	ANK_REP_REGION	UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/TrEMBL
SMART	ANK	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48403	UniProtKB/TrEMBL
UniProt	A0A0D9RMC7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-12-08	TRPA1	transient receptor potential cation channel subfamily A member 1	LOC103236955	transient receptor potential cation channel subfamily A member 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM