F9 (coagulation factor IX) - Rat Genome Database

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Gene: F9 (coagulation factor IX) Chlorocebus sabaeus
Analyze
Symbol: F9
Name: coagulation factor IX
RGD ID: 18540019
Description: ENCODES a protein that exhibits metal ion binding (ortholog); peptidase activity (ortholog); INVOLVED IN blood coagulation (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); blood coagulation disease (ortholog); FOUND IN endoplasmic reticulum lumen (inferred); extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X114,618,397 - 114,650,827 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX114,618,639 - 114,651,365 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606552,325,926 - 52,357,748 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
F9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X114,618,397 - 114,650,827 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX114,618,639 - 114,651,365 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606552,325,926 - 52,357,748 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
F9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X139,530,739 - 139,563,459 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX139,530,739 - 139,563,459 (+)EnsemblGRCh38hg38GRCh38
GRCh37X138,612,898 - 138,645,618 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X138,440,561 - 138,473,283 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X138,338,414 - 138,371,137NCBI
CeleraX138,980,334 - 139,013,056 (+)NCBICelera
Cytogenetic MapXq27.1NCBI
HuRefX127,880,671 - 127,913,025 (+)NCBIHuRef
CHM1_1X138,523,783 - 138,556,510 (+)NCBICHM1_1
T2T-CHM13v2.0X137,842,731 - 137,875,455 (+)NCBIT2T-CHM13v2.0
F9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X59,044,675 - 59,076,120 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX59,044,824 - 59,076,119 (+)EnsemblGRCm39 Ensembl
GRCm38X59,999,329 - 60,030,760 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX59,999,464 - 60,030,759 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X57,252,641 - 57,283,935 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X56,346,248 - 56,377,542 (+)NCBIMGSCv36mm8
CeleraX46,438,864 - 46,469,954 (+)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX33.5NCBI
F9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X143,388,642 - 143,433,143 (+)NCBIGRCr8
mRatBN7.2X138,352,334 - 138,396,835 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX138,352,298 - 138,396,835 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX140,570,592 - 140,613,280 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X144,101,626 - 144,144,314 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X141,680,624 - 141,723,310 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X143,097,507 - 143,141,791 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX143,097,525 - 143,141,794 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X143,127,239 - 143,171,465 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X145,527,978 - 145,575,966 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X145,647,657 - 145,648,632 (+)NCBI
CeleraX134,429,774 - 134,473,582 (+)NCBICelera
Cytogenetic MapXq36NCBI
F9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554895,749,187 - 5,780,866 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554895,747,718 - 5,780,899 (-)NCBIChiLan1.0ChiLan1.0
F9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X138,978,746 - 139,013,001 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X138,982,348 - 139,016,603 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X128,684,709 - 128,719,020 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X138,934,144 - 138,967,180 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX138,934,167 - 138,967,087 (+)Ensemblpanpan1.1panPan2
F9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X109,501,341 - 109,533,798 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX109,501,341 - 109,533,798 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX95,328,677 - 95,361,130 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X111,487,863 - 111,520,319 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX111,487,863 - 111,520,319 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X108,621,887 - 108,654,350 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X110,806,410 - 110,838,864 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X110,485,875 - 110,518,335 (+)NCBIUU_Cfam_GSD_1.0
F9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X107,524,352 - 107,562,278 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365138,053,615 - 8,090,234 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365138,052,998 - 8,090,245 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
F9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX114,218,707 - 114,250,429 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X114,218,704 - 114,250,436 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X130,417,620 - 130,448,319 (+)NCBISscrofa10.2Sscrofa10.2susScr3
F9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248087,136,703 - 7,175,709 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248087,137,482 - 7,175,255 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
6 6 17 19 19 4 4

Sequence


Ensembl Acc Id: ENSCSAT00000005479   ⟹   ENSCSAP00000003699
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX114,618,639 - 114,651,365 (+)Ensembl
RefSeq Acc Id: XM_007992840   ⟹   XP_007991031
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X114,618,397 - 114,650,827 (+)NCBI
Vero_WHO_p1.0NW_02366606552,325,926 - 52,357,748 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037988872   ⟹   XP_037844800
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606552,325,927 - 52,357,426 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007991031 (Get FASTA)   NCBI Sequence Viewer  
  XP_037844800 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003699
  ENSCSAP00000003699.1
RefSeq Acc Id: XP_007991031   ⟸   XM_007992840
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R510 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000003699   ⟸   ENSCSAT00000005479
RefSeq Acc Id: XP_037844800   ⟸   XM_037988872
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007436 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005479.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.10 UniProtKB/TrEMBL
  4.10.740.10 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro Coagulation_fac-like_Gla_dom UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  GLA-like_dom_SF UniProtKB/TrEMBL
  GLA_domain UniProtKB/TrEMBL
  Pept_S1A_FX UniProtKB/TrEMBL
  Peptidase_S1_coag_factors UniProtKB/TrEMBL
  Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
KEGG Report csab:103232665 UniProtKB/TrEMBL
NCBI Gene F9 ENTREZGENE
PANTHER COAGULATION FACTOR UniProtKB/TrEMBL
  PTHR24278:SF31 UniProtKB/TrEMBL
Pfam EGF UniProtKB/TrEMBL
  FXa_inhibition UniProtKB/TrEMBL
  Gla UniProtKB/TrEMBL
  Trypsin UniProtKB/TrEMBL
PIRSF Factor_X UniProtKB/TrEMBL
PRINTS CHYMOTRYPSIN UniProtKB/TrEMBL
  EGFBLOOD UniProtKB/TrEMBL
  GLABLOOD UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  GLA_1 UniProtKB/TrEMBL
  GLA_2 UniProtKB/TrEMBL
  TRYPSIN_DOM UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  GLA UniProtKB/TrEMBL
  Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF50494 UniProtKB/TrEMBL
  SSF57630 UniProtKB/TrEMBL
UniProt A0A0D9R510 ENTREZGENE, UniProtKB/TrEMBL